Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02409 and CCNA_02410 are separated by 145 nucleotides CCNA_02410 and CCNA_02411 overlap by 14 nucleotides
CCNA_02409: CCNA_02409 - hybrid sensor histidine kinase/receiver protein, at 2,552,018 to 2,553,811
_02409
CCNA_02410: CCNA_02410 - alpha-methylacyl-CoA racemase, at 2,553,957 to 2,555,147
_02410
CCNA_02411: CCNA_02411 - putative lytic transglycosylase PleA, at 2,555,134 to 2,556,000
_02411
Position (kb)
2553
2554
2555
2556 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2552.963 kb on - strand, within CCNA_02409 at 2552.969 kb on + strand, within CCNA_02409 at 2553.058 kb on + strand, within CCNA_02409 at 2553.072 kb on + strand, within CCNA_02409 at 2553.080 kb on + strand, within CCNA_02409 at 2553.080 kb on - strand, within CCNA_02409 at 2553.080 kb on - strand, within CCNA_02409 at 2553.102 kb on + strand, within CCNA_02409 at 2553.163 kb on - strand, within CCNA_02409 at 2553.191 kb on - strand, within CCNA_02409 at 2553.193 kb on + strand, within CCNA_02409 at 2553.221 kb on + strand, within CCNA_02409 at 2553.229 kb on - strand, within CCNA_02409 at 2553.237 kb on + strand, within CCNA_02409 at 2553.237 kb on + strand, within CCNA_02409 at 2553.237 kb on + strand, within CCNA_02409 at 2553.245 kb on - strand, within CCNA_02409 at 2553.245 kb on - strand, within CCNA_02409 at 2553.245 kb on - strand, within CCNA_02409 at 2553.262 kb on + strand, within CCNA_02409 at 2553.282 kb on + strand, within CCNA_02409 at 2553.295 kb on + strand, within CCNA_02409 at 2553.321 kb on + strand, within CCNA_02409 at 2553.327 kb on + strand, within CCNA_02409 at 2553.335 kb on - strand, within CCNA_02409 at 2553.358 kb on + strand, within CCNA_02409 at 2553.374 kb on + strand, within CCNA_02409 at 2553.387 kb on + strand, within CCNA_02409 at 2553.405 kb on - strand, within CCNA_02409 at 2553.405 kb on - strand, within CCNA_02409 at 2553.442 kb on - strand, within CCNA_02409 at 2553.448 kb on + strand, within CCNA_02409 at 2553.458 kb on + strand, within CCNA_02409 at 2553.458 kb on + strand, within CCNA_02409 at 2553.466 kb on - strand, within CCNA_02409 at 2553.466 kb on - strand, within CCNA_02409 at 2553.473 kb on + strand, within CCNA_02409 at 2553.558 kb on - strand, within CCNA_02409 at 2553.586 kb on + strand, within CCNA_02409 at 2553.594 kb on + strand, within CCNA_02409 at 2553.594 kb on + strand, within CCNA_02409 at 2553.624 kb on - strand, within CCNA_02409 at 2553.624 kb on - strand, within CCNA_02409 at 2553.637 kb on - strand at 2553.637 kb on - strand at 2553.669 kb on - strand at 2553.721 kb on + strand at 2553.729 kb on - strand at 2553.744 kb on + strand at 2553.747 kb on - strand at 2553.750 kb on + strand at 2553.763 kb on - strand at 2553.855 kb on + strand at 2553.924 kb on + strand at 2553.924 kb on + strand at 2553.924 kb on + strand at 2553.932 kb on - strand at 2553.955 kb on - strand at 2553.974 kb on - strand at 2553.976 kb on + strand at 2554.069 kb on - strand at 2554.080 kb on - strand, within CCNA_02410 at 2554.115 kb on + strand, within CCNA_02410 at 2554.169 kb on - strand, within CCNA_02410 at 2554.179 kb on + strand, within CCNA_02410 at 2554.179 kb on + strand, within CCNA_02410 at 2554.179 kb on + strand, within CCNA_02410 at 2554.179 kb on + strand, within CCNA_02410 at 2554.187 kb on - strand, within CCNA_02410 at 2554.251 kb on + strand, within CCNA_02410 at 2554.264 kb on - strand, within CCNA_02410 at 2554.264 kb on - strand, within CCNA_02410 at 2554.264 kb on - strand, within CCNA_02410 at 2554.266 kb on + strand, within CCNA_02410 at 2554.271 kb on + strand, within CCNA_02410 at 2554.274 kb on - strand, within CCNA_02410 at 2554.281 kb on - strand, within CCNA_02410 at 2554.297 kb on + strand, within CCNA_02410 at 2554.327 kb on + strand, within CCNA_02410 at 2554.332 kb on + strand, within CCNA_02410 at 2554.332 kb on + strand, within CCNA_02410 at 2554.332 kb on + strand, within CCNA_02410 at 2554.345 kb on - strand, within CCNA_02410 at 2554.361 kb on + strand, within CCNA_02410 at 2554.364 kb on + strand, within CCNA_02410 at 2554.449 kb on + strand, within CCNA_02410 at 2554.456 kb on - strand, within CCNA_02410 at 2554.538 kb on + strand, within CCNA_02410 at 2554.579 kb on + strand, within CCNA_02410 at 2554.583 kb on + strand, within CCNA_02410 at 2554.624 kb on - strand, within CCNA_02410 at 2554.652 kb on - strand, within CCNA_02410 at 2554.750 kb on + strand, within CCNA_02410 at 2554.750 kb on + strand, within CCNA_02410 at 2554.758 kb on - strand, within CCNA_02410 at 2554.758 kb on - strand, within CCNA_02410 at 2554.758 kb on - strand, within CCNA_02410 at 2554.783 kb on + strand, within CCNA_02410 at 2554.807 kb on + strand, within CCNA_02410 at 2554.809 kb on - strand, within CCNA_02410 at 2554.819 kb on - strand, within CCNA_02410 at 2554.906 kb on + strand, within CCNA_02410 at 2554.906 kb on + strand, within CCNA_02410 at 2554.912 kb on - strand, within CCNA_02410 at 2554.914 kb on - strand, within CCNA_02410 at 2554.921 kb on + strand, within CCNA_02410 at 2555.047 kb on + strand at 2555.052 kb on + strand at 2555.082 kb on - strand at 2555.084 kb on - strand at 2555.129 kb on - strand at 2555.129 kb on - strand at 2555.142 kb on + strand at 2555.194 kb on + strand at 2555.194 kb on - strand at 2555.317 kb on - strand, within CCNA_02411 at 2555.423 kb on + strand, within CCNA_02411 at 2555.441 kb on + strand, within CCNA_02411 at 2555.449 kb on - strand, within CCNA_02411 at 2555.457 kb on + strand, within CCNA_02411 at 2555.521 kb on + strand, within CCNA_02411 at 2555.544 kb on - strand, within CCNA_02411 at 2555.582 kb on + strand, within CCNA_02411 at 2555.582 kb on + strand, within CCNA_02411 at 2555.582 kb on + strand, within CCNA_02411 at 2555.582 kb on + strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.590 kb on - strand, within CCNA_02411 at 2555.600 kb on - strand, within CCNA_02411 at 2555.600 kb on - strand, within CCNA_02411 at 2555.602 kb on - strand, within CCNA_02411 at 2555.628 kb on + strand, within CCNA_02411 at 2555.628 kb on + strand, within CCNA_02411 at 2555.628 kb on + strand, within CCNA_02411 at 2555.628 kb on + strand, within CCNA_02411 at 2555.628 kb on + strand, within CCNA_02411 at 2555.628 kb on + strand, within CCNA_02411 at 2555.636 kb on - strand, within CCNA_02411 at 2555.636 kb on - strand, within CCNA_02411 at 2555.695 kb on + strand, within CCNA_02411 at 2555.703 kb on - strand, within CCNA_02411 at 2555.744 kb on + strand, within CCNA_02411 at 2555.752 kb on - strand, within CCNA_02411 at 2555.785 kb on - strand, within CCNA_02411 at 2555.795 kb on - strand, within CCNA_02411 at 2555.821 kb on + strand, within CCNA_02411 at 2555.829 kb on - strand, within CCNA_02411 at 2555.861 kb on + strand, within CCNA_02411 at 2555.861 kb on + strand, within CCNA_02411 at 2555.869 kb on - strand, within CCNA_02411 at 2555.869 kb on - strand, within CCNA_02411 at 2555.869 kb on - strand, within CCNA_02411 at 2555.869 kb on - strand, within CCNA_02411 at 2555.965 kb on + strand at 2555.973 kb on - strand at 2556.003 kb on + strand at 2556.004 kb on - strand at 2556.011 kb on - strand at 2556.011 kb on - strand at 2556.047 kb on - strand at 2556.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,552,963 - CCNA_02409 0.53 +0.1 2,552,969 + CCNA_02409 0.53 +0.7 2,553,058 + CCNA_02409 0.58 +0.2 2,553,072 + CCNA_02409 0.59 -0.4 2,553,080 + CCNA_02409 0.59 +0.8 2,553,080 - CCNA_02409 0.59 +0.6 2,553,080 - CCNA_02409 0.59 -0.4 2,553,102 + CCNA_02409 0.60 +0.0 2,553,163 - CCNA_02409 0.64 +0.6 2,553,191 - CCNA_02409 0.65 -2.3 2,553,193 + CCNA_02409 0.65 +0.2 2,553,221 + CCNA_02409 0.67 -0.1 2,553,229 - CCNA_02409 0.68 -0.3 2,553,237 + CCNA_02409 0.68 -0.1 2,553,237 + CCNA_02409 0.68 -1.4 2,553,237 + CCNA_02409 0.68 +0.8 2,553,245 - CCNA_02409 0.68 -0.5 2,553,245 - CCNA_02409 0.68 -0.1 2,553,245 - CCNA_02409 0.68 -0.5 2,553,262 + CCNA_02409 0.69 +0.2 2,553,282 + CCNA_02409 0.70 +1.3 2,553,295 + CCNA_02409 0.71 +0.4 2,553,321 + CCNA_02409 0.73 +0.2 2,553,327 + CCNA_02409 0.73 -0.1 2,553,335 - CCNA_02409 0.73 -0.1 2,553,358 + CCNA_02409 0.75 +0.3 2,553,374 + CCNA_02409 0.76 +1.3 2,553,387 + CCNA_02409 0.76 -0.7 2,553,405 - CCNA_02409 0.77 -0.8 2,553,405 - CCNA_02409 0.77 -1.2 2,553,442 - CCNA_02409 0.79 +0.3 2,553,448 + CCNA_02409 0.80 +0.9 2,553,458 + CCNA_02409 0.80 +0.5 2,553,458 + CCNA_02409 0.80 +0.2 2,553,466 - CCNA_02409 0.81 +0.7 2,553,466 - CCNA_02409 0.81 -0.7 2,553,473 + CCNA_02409 0.81 -0.5 2,553,558 - CCNA_02409 0.86 -0.2 2,553,586 + CCNA_02409 0.87 -0.3 2,553,594 + CCNA_02409 0.88 -0.4 2,553,594 + CCNA_02409 0.88 +1.2 2,553,624 - CCNA_02409 0.90 -0.1 2,553,624 - CCNA_02409 0.90 -0.6 2,553,637 - -0.7 2,553,637 - +0.4 2,553,669 - -0.4 2,553,721 + +2.7 2,553,729 - +0.3 2,553,744 + +0.7 2,553,747 - -0.8 2,553,750 + +0.5 2,553,763 - -0.5 2,553,855 + -0.2 2,553,924 + +0.1 2,553,924 + -1.2 2,553,924 + +0.8 2,553,932 - -0.0 2,553,955 - -0.3 2,553,974 - -0.3 2,553,976 + -0.2 2,554,069 - +0.9 2,554,080 - CCNA_02410 0.10 +0.6 2,554,115 + CCNA_02410 0.13 +0.4 2,554,169 - CCNA_02410 0.18 -0.2 2,554,179 + CCNA_02410 0.19 +0.4 2,554,179 + CCNA_02410 0.19 +0.7 2,554,179 + CCNA_02410 0.19 +1.5 2,554,179 + CCNA_02410 0.19 +0.2 2,554,187 - CCNA_02410 0.19 -0.2 2,554,251 + CCNA_02410 0.25 -0.2 2,554,264 - CCNA_02410 0.26 -0.1 2,554,264 - CCNA_02410 0.26 +0.3 2,554,264 - CCNA_02410 0.26 -0.1 2,554,266 + CCNA_02410 0.26 -0.3 2,554,271 + CCNA_02410 0.26 +0.6 2,554,274 - CCNA_02410 0.27 +1.2 2,554,281 - CCNA_02410 0.27 +0.1 2,554,297 + CCNA_02410 0.29 +1.1 2,554,327 + CCNA_02410 0.31 +0.0 2,554,332 + CCNA_02410 0.31 +0.7 2,554,332 + CCNA_02410 0.31 +0.0 2,554,332 + CCNA_02410 0.31 +0.1 2,554,345 - CCNA_02410 0.33 -0.3 2,554,361 + CCNA_02410 0.34 +0.1 2,554,364 + CCNA_02410 0.34 +0.1 2,554,449 + CCNA_02410 0.41 -0.1 2,554,456 - CCNA_02410 0.42 -0.8 2,554,538 + CCNA_02410 0.49 -0.0 2,554,579 + CCNA_02410 0.52 -0.3 2,554,583 + CCNA_02410 0.53 -0.7 2,554,624 - CCNA_02410 0.56 +1.7 2,554,652 - CCNA_02410 0.58 +1.0 2,554,750 + CCNA_02410 0.67 -1.3 2,554,750 + CCNA_02410 0.67 +0.9 2,554,758 - CCNA_02410 0.67 +0.3 2,554,758 - CCNA_02410 0.67 -1.3 2,554,758 - CCNA_02410 0.67 +0.1 2,554,783 + CCNA_02410 0.69 -1.5 2,554,807 + CCNA_02410 0.71 -2.1 2,554,809 - CCNA_02410 0.72 -0.8 2,554,819 - CCNA_02410 0.72 -0.9 2,554,906 + CCNA_02410 0.80 -0.2 2,554,906 + CCNA_02410 0.80 -0.0 2,554,912 - CCNA_02410 0.80 -0.1 2,554,914 - CCNA_02410 0.80 -2.7 2,554,921 + CCNA_02410 0.81 +0.1 2,555,047 + +0.4 2,555,052 + +0.3 2,555,082 - +0.2 2,555,084 - -0.9 2,555,129 - +0.4 2,555,129 - -1.3 2,555,142 + -0.7 2,555,194 + -0.5 2,555,194 - +0.2 2,555,317 - CCNA_02411 0.21 +0.3 2,555,423 + CCNA_02411 0.33 -2.4 2,555,441 + CCNA_02411 0.35 -0.2 2,555,449 - CCNA_02411 0.36 +0.5 2,555,457 + CCNA_02411 0.37 -0.6 2,555,521 + CCNA_02411 0.45 +1.0 2,555,544 - CCNA_02411 0.47 -1.5 2,555,582 + CCNA_02411 0.52 +0.2 2,555,582 + CCNA_02411 0.52 +0.2 2,555,582 + CCNA_02411 0.52 -1.1 2,555,582 + CCNA_02411 0.52 -0.0 2,555,590 - CCNA_02411 0.53 -0.1 2,555,590 - CCNA_02411 0.53 +0.3 2,555,590 - CCNA_02411 0.53 -0.0 2,555,590 - CCNA_02411 0.53 +1.5 2,555,590 - CCNA_02411 0.53 +1.1 2,555,590 - CCNA_02411 0.53 +0.6 2,555,590 - CCNA_02411 0.53 -1.1 2,555,600 - CCNA_02411 0.54 +0.4 2,555,600 - CCNA_02411 0.54 +0.8 2,555,602 - CCNA_02411 0.54 +0.5 2,555,628 + CCNA_02411 0.57 +0.4 2,555,628 + CCNA_02411 0.57 +0.5 2,555,628 + CCNA_02411 0.57 -0.7 2,555,628 + CCNA_02411 0.57 +0.2 2,555,628 + CCNA_02411 0.57 +0.0 2,555,628 + CCNA_02411 0.57 -0.1 2,555,636 - CCNA_02411 0.58 +0.7 2,555,636 - CCNA_02411 0.58 -0.6 2,555,695 + CCNA_02411 0.65 +2.3 2,555,703 - CCNA_02411 0.66 +1.1 2,555,744 + CCNA_02411 0.70 -0.1 2,555,752 - CCNA_02411 0.71 -0.6 2,555,785 - CCNA_02411 0.75 +0.5 2,555,795 - CCNA_02411 0.76 +0.3 2,555,821 + CCNA_02411 0.79 +2.0 2,555,829 - CCNA_02411 0.80 +0.5 2,555,861 + CCNA_02411 0.84 -0.4 2,555,861 + CCNA_02411 0.84 -0.6 2,555,869 - CCNA_02411 0.85 +0.4 2,555,869 - CCNA_02411 0.85 +0.4 2,555,869 - CCNA_02411 0.85 +0.3 2,555,869 - CCNA_02411 0.85 +0.3 2,555,965 + -0.0 2,555,973 - +0.3 2,556,003 + +0.1 2,556,004 - -1.4 2,556,011 - -0.6 2,556,011 - -1.0 2,556,047 - -0.2 2,556,059 + +0.7
Or see this region's nucleotide sequence