Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02378 and CCNA_02379 are separated by 69 nucleotides CCNA_02379 and CCNA_02380 are separated by 3 nucleotides CCNA_02380 and CCNA_02381 are separated by 177 nucleotides CCNA_02381 and CCNA_02382 are separated by 1 nucleotides
CCNA_02378: CCNA_02378 - SIMPL family protein, at 2,521,693 to 2,522,439
_02378
CCNA_02379: CCNA_02379 - hypothetical protein, at 2,522,509 to 2,522,988
_02379
CCNA_02380: CCNA_02380 - aspartate 1-decarboxylase, at 2,522,992 to 2,523,348
_02380
CCNA_02381: CCNA_02381 - hypothetical protein, at 2,523,526 to 2,524,176
_02381
CCNA_02382: CCNA_02382 - membrane peptidase, M23 family, at 2,524,178 to 2,525,074
_02382
Position (kb)
2522
2523
2524 Strain fitness (log2 ratio)
-2
-1
0
1 at 2522.024 kb on + strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.024 kb on + strand, within CCNA_02378 at 2522.050 kb on - strand, within CCNA_02378 at 2522.065 kb on + strand, within CCNA_02378 at 2522.066 kb on + strand, within CCNA_02378 at 2522.081 kb on + strand, within CCNA_02378 at 2522.123 kb on + strand, within CCNA_02378 at 2522.142 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.165 kb on + strand, within CCNA_02378 at 2522.208 kb on + strand, within CCNA_02378 at 2522.208 kb on + strand, within CCNA_02378 at 2522.216 kb on - strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.232 kb on + strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.240 kb on - strand, within CCNA_02378 at 2522.245 kb on + strand, within CCNA_02378 at 2522.245 kb on + strand, within CCNA_02378 at 2522.245 kb on + strand, within CCNA_02378 at 2522.263 kb on + strand, within CCNA_02378 at 2522.263 kb on + strand, within CCNA_02378 at 2522.346 kb on + strand, within CCNA_02378 at 2522.532 kb on - strand at 2522.543 kb on - strand at 2522.615 kb on + strand, within CCNA_02379 at 2522.739 kb on - strand, within CCNA_02379 at 2522.789 kb on - strand, within CCNA_02379 at 2522.800 kb on + strand, within CCNA_02379 at 2522.838 kb on - strand, within CCNA_02379 at 2522.845 kb on + strand, within CCNA_02379 at 2522.845 kb on + strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.853 kb on - strand, within CCNA_02379 at 2522.876 kb on + strand, within CCNA_02379 at 2522.878 kb on - strand, within CCNA_02379 at 2522.889 kb on - strand, within CCNA_02379 at 2522.894 kb on - strand, within CCNA_02379 at 2522.895 kb on + strand, within CCNA_02379 at 2522.903 kb on - strand, within CCNA_02379 at 2522.928 kb on + strand, within CCNA_02379 at 2522.978 kb on - strand at 2523.007 kb on - strand at 2523.180 kb on - strand, within CCNA_02380 at 2523.220 kb on - strand, within CCNA_02380 at 2523.334 kb on - strand at 2523.358 kb on - strand at 2523.384 kb on + strand at 2523.421 kb on + strand at 2523.447 kb on + strand at 2523.568 kb on + strand at 2523.590 kb on - strand at 2523.767 kb on + strand, within CCNA_02381 at 2523.827 kb on + strand, within CCNA_02381 at 2523.829 kb on + strand, within CCNA_02381 at 2523.852 kb on + strand, within CCNA_02381 at 2523.894 kb on - strand, within CCNA_02381 at 2523.965 kb on - strand, within CCNA_02381 at 2523.965 kb on - strand, within CCNA_02381 at 2523.993 kb on - strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.035 kb on + strand, within CCNA_02381 at 2524.043 kb on - strand, within CCNA_02381 at 2524.043 kb on - strand, within CCNA_02381 at 2524.043 kb on - strand, within CCNA_02381 at 2524.043 kb on - strand, within CCNA_02381 at 2524.094 kb on + strand, within CCNA_02381 at 2524.094 kb on + strand, within CCNA_02381 at 2524.102 kb on - strand, within CCNA_02381 at 2524.127 kb on - strand at 2524.137 kb on + strand at 2524.145 kb on - strand at 2524.145 kb on - strand at 2524.145 kb on - strand at 2524.187 kb on + strand at 2524.193 kb on - strand at 2524.204 kb on - strand at 2524.209 kb on + strand at 2524.342 kb on + strand, within CCNA_02382
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,522,024 + CCNA_02378 0.44 +0.1 2,522,024 + CCNA_02378 0.44 -0.2 2,522,024 + CCNA_02378 0.44 +0.0 2,522,050 - CCNA_02378 0.48 -0.3 2,522,065 + CCNA_02378 0.50 -0.3 2,522,066 + CCNA_02378 0.50 +0.7 2,522,081 + CCNA_02378 0.52 +0.4 2,522,123 + CCNA_02378 0.58 -0.2 2,522,142 + CCNA_02378 0.60 -0.9 2,522,165 + CCNA_02378 0.63 +0.2 2,522,165 + CCNA_02378 0.63 -0.6 2,522,165 + CCNA_02378 0.63 -0.3 2,522,165 + CCNA_02378 0.63 +0.4 2,522,208 + CCNA_02378 0.69 -1.1 2,522,208 + CCNA_02378 0.69 +0.5 2,522,216 - CCNA_02378 0.70 -0.1 2,522,232 + CCNA_02378 0.72 -0.3 2,522,232 + CCNA_02378 0.72 -0.4 2,522,232 + CCNA_02378 0.72 +0.4 2,522,240 - CCNA_02378 0.73 +1.7 2,522,240 - CCNA_02378 0.73 +0.7 2,522,245 + CCNA_02378 0.74 -0.1 2,522,245 + CCNA_02378 0.74 +0.8 2,522,245 + CCNA_02378 0.74 -0.8 2,522,263 + CCNA_02378 0.76 -1.3 2,522,263 + CCNA_02378 0.76 -0.3 2,522,346 + CCNA_02378 0.87 +0.2 2,522,532 - +0.5 2,522,543 - -0.1 2,522,615 + CCNA_02379 0.22 -0.7 2,522,739 - CCNA_02379 0.48 +0.3 2,522,789 - CCNA_02379 0.58 +0.1 2,522,800 + CCNA_02379 0.61 -0.4 2,522,838 - CCNA_02379 0.69 -0.1 2,522,845 + CCNA_02379 0.70 -0.5 2,522,845 + CCNA_02379 0.70 -0.3 2,522,853 - CCNA_02379 0.72 +0.3 2,522,853 - CCNA_02379 0.72 -0.0 2,522,876 + CCNA_02379 0.76 -0.3 2,522,878 - CCNA_02379 0.77 +0.2 2,522,889 - CCNA_02379 0.79 +1.0 2,522,894 - CCNA_02379 0.80 -0.5 2,522,895 + CCNA_02379 0.80 -0.7 2,522,903 - CCNA_02379 0.82 +1.4 2,522,928 + CCNA_02379 0.87 -0.1 2,522,978 - -0.0 2,523,007 - -1.0 2,523,180 - CCNA_02380 0.53 -0.5 2,523,220 - CCNA_02380 0.64 +0.1 2,523,334 - -1.8 2,523,358 - -0.6 2,523,384 + +1.0 2,523,421 + -0.6 2,523,447 + +0.2 2,523,568 + +0.2 2,523,590 - -1.1 2,523,767 + CCNA_02381 0.37 -0.4 2,523,827 + CCNA_02381 0.46 -0.3 2,523,829 + CCNA_02381 0.47 +0.0 2,523,852 + CCNA_02381 0.50 -1.0 2,523,894 - CCNA_02381 0.57 -0.3 2,523,965 - CCNA_02381 0.67 +1.0 2,523,965 - CCNA_02381 0.67 +0.8 2,523,993 - CCNA_02381 0.72 +0.1 2,524,035 + CCNA_02381 0.78 +0.1 2,524,035 + CCNA_02381 0.78 -1.1 2,524,035 + CCNA_02381 0.78 -0.7 2,524,035 + CCNA_02381 0.78 +0.2 2,524,035 + CCNA_02381 0.78 -0.1 2,524,035 + CCNA_02381 0.78 -0.1 2,524,035 + CCNA_02381 0.78 +0.8 2,524,043 - CCNA_02381 0.79 +0.3 2,524,043 - CCNA_02381 0.79 -0.0 2,524,043 - CCNA_02381 0.79 -0.2 2,524,043 - CCNA_02381 0.79 +1.2 2,524,094 + CCNA_02381 0.87 -0.5 2,524,094 + CCNA_02381 0.87 +0.2 2,524,102 - CCNA_02381 0.88 +0.8 2,524,127 - +0.5 2,524,137 + -1.1 2,524,145 - -0.2 2,524,145 - +0.3 2,524,145 - -1.5 2,524,187 + -1.5 2,524,193 - -0.2 2,524,204 - -1.5 2,524,209 + -0.7 2,524,342 + CCNA_02382 0.18 -1.1
Or see this region's nucleotide sequence