Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02344 and CCNA_02345 are separated by 160 nucleotides CCNA_02345 and CCNA_02346 overlap by 4 nucleotides CCNA_02346 and CCNA_02347 are separated by 99 nucleotides
CCNA_02344: CCNA_02344 - phosphoglycerate mutase, at 2,484,136 to 2,484,849
_02344
CCNA_02345: CCNA_02345 - hypothetical protein, at 2,485,010 to 2,485,225
_02345
CCNA_02346: CCNA_02346 - arabinose-5-phosphate isomerase, at 2,485,222 to 2,486,178
_02346
CCNA_02347: CCNA_02347 - phosphomannomutase/phosphoglucomutase, at 2,486,278 to 2,487,774
_02347
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2484.313 kb on - strand, within CCNA_02344 at 2484.332 kb on + strand, within CCNA_02344 at 2484.426 kb on - strand, within CCNA_02344 at 2484.559 kb on + strand, within CCNA_02344 at 2484.631 kb on - strand, within CCNA_02344 at 2484.673 kb on + strand, within CCNA_02344 at 2484.768 kb on + strand, within CCNA_02344 at 2484.813 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.886 kb on + strand at 2484.894 kb on - strand at 2484.954 kb on - strand at 2484.955 kb on + strand at 2484.959 kb on + strand at 2484.967 kb on - strand at 2484.967 kb on - strand at 2484.985 kb on - strand at 2485.021 kb on - strand at 2485.061 kb on - strand, within CCNA_02345 at 2485.065 kb on - strand, within CCNA_02345 at 2485.069 kb on + strand, within CCNA_02345 at 2485.077 kb on - strand, within CCNA_02345 at 2485.094 kb on - strand, within CCNA_02345 at 2485.105 kb on + strand, within CCNA_02345 at 2485.117 kb on + strand, within CCNA_02345 at 2485.123 kb on - strand, within CCNA_02345 at 2485.135 kb on + strand, within CCNA_02345 at 2485.135 kb on + strand, within CCNA_02345 at 2485.168 kb on + strand, within CCNA_02345 at 2485.178 kb on - strand, within CCNA_02345 at 2485.207 kb on + strand at 2485.238 kb on - strand at 2485.240 kb on + strand at 2485.346 kb on - strand, within CCNA_02346 at 2485.369 kb on + strand, within CCNA_02346 at 2485.459 kb on - strand, within CCNA_02346 at 2485.512 kb on + strand, within CCNA_02346 at 2485.520 kb on - strand, within CCNA_02346 at 2485.631 kb on + strand, within CCNA_02346 at 2485.767 kb on + strand, within CCNA_02346 at 2485.782 kb on + strand, within CCNA_02346 at 2485.799 kb on + strand, within CCNA_02346 at 2485.824 kb on + strand, within CCNA_02346 at 2485.835 kb on + strand, within CCNA_02346 at 2485.857 kb on - strand, within CCNA_02346 at 2486.032 kb on + strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.162 kb on + strand at 2486.172 kb on + strand at 2486.241 kb on + strand at 2486.241 kb on + strand at 2486.241 kb on + strand at 2486.245 kb on + strand at 2486.248 kb on - strand at 2486.248 kb on - strand at 2486.249 kb on - strand at 2486.249 kb on - strand at 2486.254 kb on - strand at 2486.281 kb on - strand at 2486.289 kb on + strand at 2486.335 kb on + strand at 2486.348 kb on - strand at 2486.394 kb on + strand at 2486.396 kb on + strand at 2486.417 kb on + strand at 2486.425 kb on - strand at 2486.493 kb on + strand, within CCNA_02347 at 2486.532 kb on + strand, within CCNA_02347 at 2486.535 kb on - strand, within CCNA_02347 at 2486.537 kb on + strand, within CCNA_02347 at 2486.540 kb on - strand, within CCNA_02347 at 2486.543 kb on + strand, within CCNA_02347 at 2486.558 kb on + strand, within CCNA_02347 at 2486.558 kb on + strand, within CCNA_02347 at 2486.559 kb on - strand, within CCNA_02347 at 2486.596 kb on - strand, within CCNA_02347 at 2486.628 kb on + strand, within CCNA_02347 at 2486.662 kb on + strand, within CCNA_02347 at 2486.718 kb on + strand, within CCNA_02347 at 2486.718 kb on + strand, within CCNA_02347 at 2486.726 kb on - strand, within CCNA_02347 at 2486.762 kb on + strand, within CCNA_02347 at 2486.784 kb on + strand, within CCNA_02347 at 2486.792 kb on - strand, within CCNA_02347 at 2486.889 kb on + strand, within CCNA_02347 at 2486.922 kb on + strand, within CCNA_02347 at 2486.972 kb on - strand, within CCNA_02347 at 2487.042 kb on - strand, within CCNA_02347 at 2487.146 kb on + strand, within CCNA_02347
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,484,313 - CCNA_02344 0.25 -0.3 2,484,332 + CCNA_02344 0.27 -0.1 2,484,426 - CCNA_02344 0.41 -0.9 2,484,559 + CCNA_02344 0.59 +0.7 2,484,631 - CCNA_02344 0.69 -0.6 2,484,673 + CCNA_02344 0.75 -1.0 2,484,768 + CCNA_02344 0.89 -0.1 2,484,813 + +0.7 2,484,886 + -1.0 2,484,886 + -0.0 2,484,886 + -0.3 2,484,886 + -0.6 2,484,894 - +1.3 2,484,954 - -0.3 2,484,955 + +1.3 2,484,959 + -2.7 2,484,967 - +0.3 2,484,967 - -0.5 2,484,985 - -0.5 2,485,021 - -0.7 2,485,061 - CCNA_02345 0.24 +0.4 2,485,065 - CCNA_02345 0.25 +0.5 2,485,069 + CCNA_02345 0.27 -0.5 2,485,077 - CCNA_02345 0.31 -1.3 2,485,094 - CCNA_02345 0.39 -0.6 2,485,105 + CCNA_02345 0.44 +1.5 2,485,117 + CCNA_02345 0.50 +0.3 2,485,123 - CCNA_02345 0.52 +0.4 2,485,135 + CCNA_02345 0.58 +0.1 2,485,135 + CCNA_02345 0.58 +0.6 2,485,168 + CCNA_02345 0.73 +0.0 2,485,178 - CCNA_02345 0.78 -0.4 2,485,207 + +0.4 2,485,238 - +1.9 2,485,240 + -0.1 2,485,346 - CCNA_02346 0.13 -0.9 2,485,369 + CCNA_02346 0.15 +0.4 2,485,459 - CCNA_02346 0.25 +0.4 2,485,512 + CCNA_02346 0.30 +0.5 2,485,520 - CCNA_02346 0.31 -1.5 2,485,631 + CCNA_02346 0.43 -1.0 2,485,767 + CCNA_02346 0.57 -1.1 2,485,782 + CCNA_02346 0.59 -0.8 2,485,799 + CCNA_02346 0.60 -0.0 2,485,824 + CCNA_02346 0.63 +0.4 2,485,835 + CCNA_02346 0.64 -0.8 2,485,857 - CCNA_02346 0.66 +0.6 2,486,032 + CCNA_02346 0.85 -1.6 2,486,040 - CCNA_02346 0.85 +0.5 2,486,040 - CCNA_02346 0.85 -0.1 2,486,040 - CCNA_02346 0.85 -1.3 2,486,162 + +0.0 2,486,172 + -0.3 2,486,241 + +0.8 2,486,241 + -0.1 2,486,241 + +0.3 2,486,245 + +0.3 2,486,248 - +0.3 2,486,248 - -0.1 2,486,249 - -0.9 2,486,249 - +0.2 2,486,254 - +0.4 2,486,281 - -1.0 2,486,289 + -1.1 2,486,335 + -0.2 2,486,348 - -0.1 2,486,394 + +0.4 2,486,396 + -2.2 2,486,417 + -1.5 2,486,425 - +0.2 2,486,493 + CCNA_02347 0.14 +0.6 2,486,532 + CCNA_02347 0.17 +1.2 2,486,535 - CCNA_02347 0.17 -2.2 2,486,537 + CCNA_02347 0.17 -0.8 2,486,540 - CCNA_02347 0.18 -3.0 2,486,543 + CCNA_02347 0.18 -0.5 2,486,558 + CCNA_02347 0.19 -0.6 2,486,558 + CCNA_02347 0.19 +0.9 2,486,559 - CCNA_02347 0.19 -0.1 2,486,596 - CCNA_02347 0.21 -0.9 2,486,628 + CCNA_02347 0.23 +2.4 2,486,662 + CCNA_02347 0.26 +0.1 2,486,718 + CCNA_02347 0.29 -0.3 2,486,718 + CCNA_02347 0.29 -1.7 2,486,726 - CCNA_02347 0.30 -0.1 2,486,762 + CCNA_02347 0.32 +0.7 2,486,784 + CCNA_02347 0.34 -1.2 2,486,792 - CCNA_02347 0.34 +0.5 2,486,889 + CCNA_02347 0.41 +0.5 2,486,922 + CCNA_02347 0.43 +0.5 2,486,972 - CCNA_02347 0.46 -0.4 2,487,042 - CCNA_02347 0.51 -0.7 2,487,146 + CCNA_02347 0.58 -0.5
Or see this region's nucleotide sequence