Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02333 and CCNA_02334 are separated by 117 nucleotides CCNA_02334 and CCNA_02335 are separated by 62 nucleotides CCNA_02335 and CCNA_02336 overlap by 26 nucleotides
CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422
_02333
CCNA_02334: CCNA_02334 - transcriptional regulator of stalk biogenesis staR, at 2,475,540 to 2,475,935
_02334
CCNA_02335: CCNA_02335 - inositol monophosphatase family protein, at 2,475,998 to 2,476,834
_02335
CCNA_02336: CCNA_02336 - lysophospholipase L2, at 2,476,809 to 2,477,789
_02336
Position (kb)
2475
2476 Strain fitness (log2 ratio)
-1
0
1
2 at 2474.809 kb on + strand, within CCNA_02333 at 2474.850 kb on - strand, within CCNA_02333 at 2474.852 kb on + strand, within CCNA_02333 at 2474.860 kb on - strand, within CCNA_02333 at 2474.932 kb on + strand, within CCNA_02333 at 2475.370 kb on + strand at 2475.418 kb on + strand at 2475.481 kb on - strand at 2475.488 kb on - strand at 2475.527 kb on - strand at 2475.565 kb on + strand at 2475.567 kb on - strand at 2475.610 kb on + strand, within CCNA_02334 at 2475.618 kb on - strand, within CCNA_02334 at 2475.704 kb on + strand, within CCNA_02334 at 2475.716 kb on + strand, within CCNA_02334 at 2475.723 kb on + strand, within CCNA_02334 at 2475.738 kb on - strand, within CCNA_02334 at 2475.765 kb on - strand, within CCNA_02334 at 2475.769 kb on - strand, within CCNA_02334 at 2475.769 kb on - strand, within CCNA_02334 at 2475.769 kb on - strand, within CCNA_02334 at 2475.829 kb on + strand, within CCNA_02334 at 2475.829 kb on + strand, within CCNA_02334 at 2475.837 kb on - strand, within CCNA_02334 at 2475.847 kb on - strand, within CCNA_02334 at 2475.887 kb on + strand, within CCNA_02334 at 2475.938 kb on - strand at 2475.955 kb on - strand at 2475.980 kb on - strand at 2475.982 kb on + strand at 2475.982 kb on + strand at 2475.982 kb on + strand at 2475.990 kb on - strand at 2475.990 kb on - strand at 2476.084 kb on + strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.092 kb on - strand, within CCNA_02335 at 2476.095 kb on + strand, within CCNA_02335 at 2476.101 kb on + strand, within CCNA_02335 at 2476.121 kb on + strand, within CCNA_02335 at 2476.165 kb on - strand, within CCNA_02335 at 2476.179 kb on - strand, within CCNA_02335 at 2476.237 kb on + strand, within CCNA_02335 at 2476.341 kb on - strand, within CCNA_02335 at 2476.351 kb on - strand, within CCNA_02335 at 2476.376 kb on + strand, within CCNA_02335 at 2476.471 kb on - strand, within CCNA_02335 at 2476.471 kb on - strand, within CCNA_02335 at 2476.542 kb on + strand, within CCNA_02335 at 2476.550 kb on - strand, within CCNA_02335 at 2476.648 kb on + strand, within CCNA_02335 at 2476.749 kb on + strand, within CCNA_02335 at 2476.771 kb on + strand at 2476.779 kb on - strand at 2476.820 kb on - strand at 2476.887 kb on - strand at 2476.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,474,809 + CCNA_02333 0.35 +2.0 2,474,850 - CCNA_02333 0.39 +0.2 2,474,852 + CCNA_02333 0.40 +0.4 2,474,860 - CCNA_02333 0.40 +0.4 2,474,932 + CCNA_02333 0.48 +0.1 2,475,370 + +0.5 2,475,418 + +0.2 2,475,481 - +0.3 2,475,488 - +0.2 2,475,527 - +0.2 2,475,565 + -1.2 2,475,567 - -0.0 2,475,610 + CCNA_02334 0.18 +0.7 2,475,618 - CCNA_02334 0.20 +0.2 2,475,704 + CCNA_02334 0.41 +0.4 2,475,716 + CCNA_02334 0.44 -0.7 2,475,723 + CCNA_02334 0.46 +0.1 2,475,738 - CCNA_02334 0.50 +0.1 2,475,765 - CCNA_02334 0.57 +1.5 2,475,769 - CCNA_02334 0.58 -0.4 2,475,769 - CCNA_02334 0.58 -0.9 2,475,769 - CCNA_02334 0.58 -1.3 2,475,829 + CCNA_02334 0.73 -0.3 2,475,829 + CCNA_02334 0.73 -0.3 2,475,837 - CCNA_02334 0.75 -1.7 2,475,847 - CCNA_02334 0.78 +1.0 2,475,887 + CCNA_02334 0.88 -0.5 2,475,938 - +0.4 2,475,955 - -1.2 2,475,980 - -0.0 2,475,982 + +0.2 2,475,982 + +0.0 2,475,982 + -0.0 2,475,990 - +0.1 2,475,990 - -0.1 2,476,084 + CCNA_02335 0.10 +0.1 2,476,092 - CCNA_02335 0.11 +0.7 2,476,092 - CCNA_02335 0.11 +0.2 2,476,092 - CCNA_02335 0.11 +0.2 2,476,092 - CCNA_02335 0.11 +0.5 2,476,092 - CCNA_02335 0.11 -0.5 2,476,092 - CCNA_02335 0.11 +1.7 2,476,092 - CCNA_02335 0.11 -0.7 2,476,095 + CCNA_02335 0.12 +0.4 2,476,101 + CCNA_02335 0.12 -0.0 2,476,121 + CCNA_02335 0.15 +0.8 2,476,165 - CCNA_02335 0.20 +0.3 2,476,179 - CCNA_02335 0.22 +0.2 2,476,237 + CCNA_02335 0.29 -0.7 2,476,341 - CCNA_02335 0.41 -1.0 2,476,351 - CCNA_02335 0.42 +0.9 2,476,376 + CCNA_02335 0.45 +0.2 2,476,471 - CCNA_02335 0.57 +0.2 2,476,471 - CCNA_02335 0.57 -0.4 2,476,542 + CCNA_02335 0.65 -0.1 2,476,550 - CCNA_02335 0.66 -0.6 2,476,648 + CCNA_02335 0.78 -0.3 2,476,749 + CCNA_02335 0.90 -0.4 2,476,771 + +1.2 2,476,779 - +1.4 2,476,820 - +0.4 2,476,887 - -0.5 2,476,887 - -0.9
Or see this region's nucleotide sequence