Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02329 and CCNA_02330 are separated by 27 nucleotides CCNA_02330 and CCNA_02331 overlap by 16 nucleotides CCNA_02331 and CCNA_02332 are separated by 135 nucleotides
CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748
_02329
CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991
_02330
CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827
_02331
CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481
_02332
Position (kb)
2472
2473 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2471.921 kb on + strand, within CCNA_02329 at 2471.974 kb on - strand, within CCNA_02329 at 2472.723 kb on + strand at 2472.736 kb on - strand at 2472.826 kb on + strand, within CCNA_02330 at 2472.853 kb on + strand, within CCNA_02330 at 2472.867 kb on + strand, within CCNA_02330 at 2472.872 kb on + strand, within CCNA_02330 at 2472.935 kb on - strand, within CCNA_02330 at 2472.951 kb on - strand, within CCNA_02330 at 2473.003 kb on + strand at 2473.011 kb on - strand at 2473.011 kb on - strand at 2473.030 kb on + strand at 2473.043 kb on - strand at 2473.113 kb on - strand, within CCNA_02331 at 2473.127 kb on + strand, within CCNA_02331 at 2473.145 kb on + strand, within CCNA_02331 at 2473.227 kb on - strand, within CCNA_02331 at 2473.315 kb on + strand, within CCNA_02331 at 2473.339 kb on + strand, within CCNA_02331 at 2473.467 kb on - strand, within CCNA_02331 at 2473.514 kb on + strand, within CCNA_02331 at 2473.514 kb on - strand, within CCNA_02331 at 2473.588 kb on + strand, within CCNA_02331 at 2473.601 kb on - strand, within CCNA_02331 at 2473.627 kb on + strand, within CCNA_02331 at 2473.633 kb on + strand, within CCNA_02331 at 2473.635 kb on - strand, within CCNA_02331 at 2473.641 kb on - strand, within CCNA_02331 at 2473.714 kb on - strand, within CCNA_02331 at 2473.747 kb on + strand at 2473.774 kb on + strand at 2473.781 kb on + strand at 2473.816 kb on + strand at 2473.901 kb on + strand at 2473.933 kb on - strand at 2473.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,471,921 + CCNA_02329 0.45 -0.1 2,471,974 - CCNA_02329 0.49 +0.4 2,472,723 + +0.3 2,472,736 - -0.4 2,472,826 + CCNA_02330 0.23 +0.7 2,472,853 + CCNA_02330 0.36 -0.7 2,472,867 + CCNA_02330 0.42 +0.2 2,472,872 + CCNA_02330 0.44 +0.1 2,472,935 - CCNA_02330 0.74 +0.1 2,472,951 - CCNA_02330 0.81 -0.5 2,473,003 + -0.4 2,473,011 - -0.6 2,473,011 - -0.1 2,473,030 + +0.2 2,473,043 - -2.4 2,473,113 - CCNA_02331 0.16 -1.2 2,473,127 + CCNA_02331 0.18 +0.4 2,473,145 + CCNA_02331 0.20 +0.1 2,473,227 - CCNA_02331 0.29 -0.2 2,473,315 + CCNA_02331 0.40 +0.4 2,473,339 + CCNA_02331 0.43 +0.4 2,473,467 - CCNA_02331 0.58 +0.6 2,473,514 + CCNA_02331 0.63 +0.0 2,473,514 - CCNA_02331 0.63 +0.1 2,473,588 + CCNA_02331 0.72 -0.4 2,473,601 - CCNA_02331 0.73 -0.3 2,473,627 + CCNA_02331 0.76 +0.2 2,473,633 + CCNA_02331 0.77 +0.6 2,473,635 - CCNA_02331 0.77 +1.3 2,473,641 - CCNA_02331 0.78 +0.1 2,473,714 - CCNA_02331 0.87 -0.2 2,473,747 + +0.6 2,473,774 + +0.6 2,473,781 + +2.4 2,473,816 + +0.5 2,473,901 + +0.9 2,473,933 - +1.4 2,473,955 + +0.5
Or see this region's nucleotide sequence