Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02296 and CCNA_02297 are separated by 138 nucleotides CCNA_02297 and CCNA_02298 overlap by 59 nucleotides CCNA_02298 and CCNA_02299 are separated by 58 nucleotides CCNA_02299 and CCNA_02300 overlap by 4 nucleotides
CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141
_02296
CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861
_02297
CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762
_02298
CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528
_02299
CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418
_02300
Position (kb)
2444
2445
2446 Strain fitness (log2 ratio)
-1
0
1 at 2444.215 kb on + strand at 2444.222 kb on - strand at 2444.222 kb on - strand at 2444.278 kb on + strand at 2444.278 kb on + strand at 2444.304 kb on - strand at 2444.316 kb on - strand at 2444.333 kb on - strand at 2444.400 kb on - strand, within CCNA_02297 at 2444.407 kb on - strand, within CCNA_02297 at 2444.417 kb on - strand, within CCNA_02297 at 2444.438 kb on - strand, within CCNA_02297 at 2444.442 kb on + strand, within CCNA_02297 at 2444.455 kb on + strand, within CCNA_02297 at 2444.473 kb on + strand, within CCNA_02297 at 2444.473 kb on + strand, within CCNA_02297 at 2444.481 kb on - strand, within CCNA_02297 at 2444.484 kb on + strand, within CCNA_02297 at 2444.489 kb on + strand, within CCNA_02297 at 2444.571 kb on + strand, within CCNA_02297 at 2444.633 kb on - strand, within CCNA_02297 at 2444.646 kb on - strand, within CCNA_02297 at 2444.697 kb on + strand, within CCNA_02297 at 2444.697 kb on + strand, within CCNA_02297 at 2444.778 kb on + strand, within CCNA_02297 at 2444.838 kb on - strand at 2444.903 kb on - strand, within CCNA_02298 at 2444.935 kb on - strand, within CCNA_02298 at 2444.942 kb on - strand, within CCNA_02298 at 2444.954 kb on + strand, within CCNA_02298 at 2444.969 kb on + strand, within CCNA_02298 at 2444.976 kb on - strand, within CCNA_02298 at 2445.018 kb on + strand, within CCNA_02298 at 2445.018 kb on + strand, within CCNA_02298 at 2445.021 kb on + strand, within CCNA_02298 at 2445.027 kb on - strand, within CCNA_02298 at 2445.029 kb on - strand, within CCNA_02298 at 2445.029 kb on - strand, within CCNA_02298 at 2445.072 kb on - strand, within CCNA_02298 at 2445.171 kb on + strand, within CCNA_02298 at 2445.178 kb on - strand, within CCNA_02298 at 2445.216 kb on - strand, within CCNA_02298 at 2445.226 kb on + strand, within CCNA_02298 at 2445.238 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.303 kb on - strand, within CCNA_02298 at 2445.322 kb on + strand, within CCNA_02298 at 2445.355 kb on + strand, within CCNA_02298 at 2445.363 kb on - strand, within CCNA_02298 at 2445.383 kb on - strand, within CCNA_02298 at 2445.409 kb on - strand, within CCNA_02298 at 2445.409 kb on - strand, within CCNA_02298 at 2445.454 kb on - strand, within CCNA_02298 at 2445.461 kb on + strand, within CCNA_02298 at 2445.484 kb on + strand, within CCNA_02298 at 2445.571 kb on - strand, within CCNA_02298 at 2445.609 kb on + strand, within CCNA_02298 at 2445.640 kb on - strand, within CCNA_02298 at 2445.683 kb on + strand at 2445.683 kb on + strand at 2445.684 kb on + strand at 2445.691 kb on - strand at 2445.727 kb on + strand at 2445.735 kb on - strand at 2445.806 kb on + strand at 2445.836 kb on + strand at 2445.836 kb on + strand at 2445.841 kb on + strand at 2445.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,444,215 + -0.9 2,444,222 - +0.1 2,444,222 - -0.1 2,444,278 + +0.5 2,444,278 + +0.0 2,444,304 - +0.6 2,444,316 - +0.3 2,444,333 - -0.5 2,444,400 - CCNA_02297 0.21 +0.1 2,444,407 - CCNA_02297 0.22 -0.3 2,444,417 - CCNA_02297 0.24 -0.1 2,444,438 - CCNA_02297 0.27 -0.4 2,444,442 + CCNA_02297 0.28 +0.7 2,444,455 + CCNA_02297 0.30 +0.2 2,444,473 + CCNA_02297 0.33 -0.7 2,444,473 + CCNA_02297 0.33 +0.1 2,444,481 - CCNA_02297 0.35 -0.8 2,444,484 + CCNA_02297 0.35 -0.0 2,444,489 + CCNA_02297 0.36 -0.4 2,444,571 + CCNA_02297 0.50 -0.5 2,444,633 - CCNA_02297 0.61 -0.4 2,444,646 - CCNA_02297 0.63 +0.1 2,444,697 + CCNA_02297 0.72 -0.7 2,444,697 + CCNA_02297 0.72 +0.1 2,444,778 + CCNA_02297 0.86 +0.6 2,444,838 - -0.4 2,444,903 - CCNA_02298 0.10 -0.4 2,444,935 - CCNA_02298 0.14 +0.6 2,444,942 - CCNA_02298 0.14 +0.9 2,444,954 + CCNA_02298 0.16 -1.6 2,444,969 + CCNA_02298 0.17 -0.4 2,444,976 - CCNA_02298 0.18 +0.4 2,445,018 + CCNA_02298 0.22 +1.4 2,445,018 + CCNA_02298 0.22 -1.0 2,445,021 + CCNA_02298 0.23 -0.1 2,445,027 - CCNA_02298 0.23 +0.8 2,445,029 - CCNA_02298 0.24 +0.3 2,445,029 - CCNA_02298 0.24 +0.8 2,445,072 - CCNA_02298 0.28 -0.7 2,445,171 + CCNA_02298 0.38 +0.9 2,445,178 - CCNA_02298 0.39 +0.9 2,445,216 - CCNA_02298 0.43 +0.7 2,445,226 + CCNA_02298 0.44 -0.0 2,445,238 + CCNA_02298 0.45 +0.6 2,445,245 + CCNA_02298 0.46 +1.0 2,445,281 - CCNA_02298 0.50 +0.6 2,445,303 - CCNA_02298 0.52 +0.7 2,445,322 + CCNA_02298 0.54 +0.3 2,445,355 + CCNA_02298 0.57 -0.1 2,445,363 - CCNA_02298 0.58 +0.7 2,445,383 - CCNA_02298 0.60 +0.4 2,445,409 - CCNA_02298 0.63 +0.1 2,445,409 - CCNA_02298 0.63 +0.6 2,445,454 - CCNA_02298 0.68 +0.7 2,445,461 + CCNA_02298 0.69 -0.1 2,445,484 + CCNA_02298 0.71 -0.8 2,445,571 - CCNA_02298 0.80 +0.3 2,445,609 + CCNA_02298 0.84 +0.3 2,445,640 - CCNA_02298 0.87 +0.1 2,445,683 + -1.3 2,445,683 + -0.8 2,445,684 + +0.2 2,445,691 - +0.3 2,445,727 + +1.1 2,445,735 - -0.5 2,445,806 + +0.2 2,445,836 + -0.3 2,445,836 + -0.6 2,445,841 + -0.0 2,445,849 - -1.2
Or see this region's nucleotide sequence