Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02284 and CCNA_02285 are separated by 51 nucleotides CCNA_02285 and CCNA_02286 are separated by 177 nucleotides CCNA_02286 and CCNA_02287 are separated by 167 nucleotides CCNA_02287 and CCNA_02288 overlap by 4 nucleotides
CCNA_02284: CCNA_02284 - DNA-3-methyladenine glycosylase II, at 2,434,123 to 2,434,764
_02284
CCNA_02285: CCNA_02285 - transcription elongation factor GreB, at 2,434,816 to 2,435,298
_02285
CCNA_02286: CCNA_02286 - hypothetical protein, at 2,435,476 to 2,435,586
_02286
CCNA_02287: CCNA_02287 - TetR-family transcriptional regulator, at 2,435,754 to 2,436,383
_02287
CCNA_02288: CCNA_02288 - tRNA synthetase class I, catalytic domain protein, at 2,436,380 to 2,437,219
_02288
Position (kb)
2435
2436 Strain fitness (log2 ratio)
-2
-1
0
1 at 2434.477 kb on - strand, within CCNA_02284 at 2434.506 kb on + strand, within CCNA_02284 at 2434.540 kb on + strand, within CCNA_02284 at 2434.579 kb on - strand, within CCNA_02284 at 2434.603 kb on - strand, within CCNA_02284 at 2434.650 kb on - strand, within CCNA_02284 at 2434.876 kb on - strand, within CCNA_02285 at 2434.887 kb on + strand, within CCNA_02285 at 2434.915 kb on - strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.942 kb on + strand, within CCNA_02285 at 2434.964 kb on + strand, within CCNA_02285 at 2434.964 kb on + strand, within CCNA_02285 at 2434.964 kb on + strand, within CCNA_02285 at 2434.972 kb on - strand, within CCNA_02285 at 2435.001 kb on - strand, within CCNA_02285 at 2435.019 kb on - strand, within CCNA_02285 at 2435.069 kb on + strand, within CCNA_02285 at 2435.082 kb on + strand, within CCNA_02285 at 2435.098 kb on + strand, within CCNA_02285 at 2435.098 kb on + strand, within CCNA_02285 at 2435.098 kb on + strand, within CCNA_02285 at 2435.149 kb on + strand, within CCNA_02285 at 2435.204 kb on + strand, within CCNA_02285 at 2435.223 kb on - strand, within CCNA_02285 at 2435.317 kb on - strand at 2435.370 kb on - strand at 2435.377 kb on + strand at 2435.382 kb on + strand at 2435.440 kb on + strand at 2435.448 kb on - strand at 2435.574 kb on + strand, within CCNA_02286 at 2435.611 kb on + strand at 2435.621 kb on + strand at 2435.743 kb on + strand at 2435.746 kb on - strand at 2435.746 kb on - strand at 2435.790 kb on - strand at 2435.796 kb on + strand at 2435.851 kb on + strand, within CCNA_02287 at 2435.859 kb on + strand, within CCNA_02287 at 2435.924 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2436.045 kb on + strand, within CCNA_02287 at 2436.045 kb on + strand, within CCNA_02287 at 2436.053 kb on - strand, within CCNA_02287 at 2436.053 kb on - strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.098 kb on - strand, within CCNA_02287 at 2436.131 kb on + strand, within CCNA_02287 at 2436.131 kb on + strand, within CCNA_02287 at 2436.268 kb on + strand, within CCNA_02287 at 2436.268 kb on + strand, within CCNA_02287 at 2436.276 kb on - strand, within CCNA_02287 at 2436.287 kb on + strand, within CCNA_02287 at 2436.295 kb on - strand, within CCNA_02287 at 2436.295 kb on - strand, within CCNA_02287 at 2436.323 kb on - strand at 2436.340 kb on - strand at 2436.344 kb on + strand at 2436.397 kb on + strand at 2436.417 kb on - strand at 2436.516 kb on - strand, within CCNA_02288 at 2436.521 kb on - strand, within CCNA_02288 at 2436.557 kb on + strand, within CCNA_02288 at 2436.572 kb on + strand, within CCNA_02288 at 2436.585 kb on - strand, within CCNA_02288
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,434,477 - CCNA_02284 0.55 +0.3 2,434,506 + CCNA_02284 0.60 +0.2 2,434,540 + CCNA_02284 0.65 -0.4 2,434,579 - CCNA_02284 0.71 +0.7 2,434,603 - CCNA_02284 0.75 +0.2 2,434,650 - CCNA_02284 0.82 -1.0 2,434,876 - CCNA_02285 0.12 -0.2 2,434,887 + CCNA_02285 0.15 -0.1 2,434,915 - CCNA_02285 0.20 +1.5 2,434,936 + CCNA_02285 0.25 +0.7 2,434,936 + CCNA_02285 0.25 +0.0 2,434,936 + CCNA_02285 0.25 +0.2 2,434,936 + CCNA_02285 0.25 -0.5 2,434,936 + CCNA_02285 0.25 -0.7 2,434,942 + CCNA_02285 0.26 -0.6 2,434,964 + CCNA_02285 0.31 +1.1 2,434,964 + CCNA_02285 0.31 +0.2 2,434,964 + CCNA_02285 0.31 +0.1 2,434,972 - CCNA_02285 0.32 +0.1 2,435,001 - CCNA_02285 0.38 +0.4 2,435,019 - CCNA_02285 0.42 +0.5 2,435,069 + CCNA_02285 0.52 -0.3 2,435,082 + CCNA_02285 0.55 +0.2 2,435,098 + CCNA_02285 0.58 -0.1 2,435,098 + CCNA_02285 0.58 +0.3 2,435,098 + CCNA_02285 0.58 -0.1 2,435,149 + CCNA_02285 0.69 -0.5 2,435,204 + CCNA_02285 0.80 -0.5 2,435,223 - CCNA_02285 0.84 +0.7 2,435,317 - +0.2 2,435,370 - +0.0 2,435,377 + -1.3 2,435,382 + -0.2 2,435,440 + -0.4 2,435,448 - -2.7 2,435,574 + CCNA_02286 0.88 -1.8 2,435,611 + -0.1 2,435,621 + +0.2 2,435,743 + +0.6 2,435,746 - +0.1 2,435,746 - -1.7 2,435,790 - -0.6 2,435,796 + -0.2 2,435,851 + CCNA_02287 0.15 +0.3 2,435,859 + CCNA_02287 0.17 -0.3 2,435,924 + CCNA_02287 0.27 +0.3 2,435,939 + CCNA_02287 0.29 +0.3 2,435,939 + CCNA_02287 0.29 -0.4 2,436,045 + CCNA_02287 0.46 +0.3 2,436,045 + CCNA_02287 0.46 -0.0 2,436,053 - CCNA_02287 0.47 +0.0 2,436,053 - CCNA_02287 0.47 -0.8 2,436,090 + CCNA_02287 0.53 +0.4 2,436,090 + CCNA_02287 0.53 +0.9 2,436,090 + CCNA_02287 0.53 -0.3 2,436,098 - CCNA_02287 0.55 +0.0 2,436,131 + CCNA_02287 0.60 +0.1 2,436,131 + CCNA_02287 0.60 +0.2 2,436,268 + CCNA_02287 0.82 +0.3 2,436,268 + CCNA_02287 0.82 -0.1 2,436,276 - CCNA_02287 0.83 -0.5 2,436,287 + CCNA_02287 0.85 -0.2 2,436,295 - CCNA_02287 0.86 -0.1 2,436,295 - CCNA_02287 0.86 +0.4 2,436,323 - +0.3 2,436,340 - -0.9 2,436,344 + -0.1 2,436,397 + -0.2 2,436,417 - -1.6 2,436,516 - CCNA_02288 0.16 -0.6 2,436,521 - CCNA_02288 0.17 +0.0 2,436,557 + CCNA_02288 0.21 -1.0 2,436,572 + CCNA_02288 0.23 -0.1 2,436,585 - CCNA_02288 0.24 -0.9
Or see this region's nucleotide sequence