Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02277 and CCNA_02278 are separated by 106 nucleotides CCNA_02278 and CCNA_02279 overlap by 4 nucleotides CCNA_02279 and CCNA_02280 overlap by 4 nucleotides
CCNA_02277: CCNA_02277 - TonB-dependent outer membrane channel, at 2,426,768 to 2,428,969
_02277
CCNA_02278: CCNA_02278 - hypothetical protein, at 2,429,076 to 2,429,684
_02278
CCNA_02279: CCNA_02279 - disulfide bond formation protein B, at 2,429,681 to 2,430,310
_02279
CCNA_02280: CCNA_02280 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 2,430,307 to 2,430,867
_02280
Position (kb)
2429
2430 Strain fitness (log2 ratio)
-1
0
1 at 2428.095 kb on + strand, within CCNA_02277 at 2428.275 kb on - strand, within CCNA_02277 at 2428.502 kb on - strand, within CCNA_02277 at 2428.533 kb on + strand, within CCNA_02277 at 2428.597 kb on + strand, within CCNA_02277 at 2428.736 kb on + strand, within CCNA_02277 at 2428.839 kb on + strand at 2428.891 kb on + strand at 2429.623 kb on - strand, within CCNA_02278 at 2429.627 kb on - strand at 2429.695 kb on + strand at 2429.748 kb on - strand, within CCNA_02279 at 2429.748 kb on - strand, within CCNA_02279 at 2429.962 kb on + strand, within CCNA_02279 at 2430.301 kb on - strand at 2430.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,428,095 + CCNA_02277 0.60 +0.1 2,428,275 - CCNA_02277 0.68 +0.3 2,428,502 - CCNA_02277 0.79 +0.7 2,428,533 + CCNA_02277 0.80 +0.5 2,428,597 + CCNA_02277 0.83 -0.2 2,428,736 + CCNA_02277 0.89 +0.2 2,428,839 + +0.1 2,428,891 + +0.2 2,429,623 - CCNA_02278 0.90 -1.2 2,429,627 - -1.5 2,429,695 + +0.6 2,429,748 - CCNA_02279 0.11 -0.9 2,429,748 - CCNA_02279 0.11 +0.3 2,429,962 + CCNA_02279 0.45 +0.2 2,430,301 - -0.5 2,430,304 + +0.0
Or see this region's nucleotide sequence