Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02271 and CCNA_02272 are separated by 68 nucleotides CCNA_02272 and CCNA_02273 are separated by 34 nucleotides CCNA_02273 and CCNA_02274 are separated by 125 nucleotides CCNA_02274 and CCNA_02275 overlap by 4 nucleotides CCNA_02275 and CCNA_02277 are separated by 162 nucleotides
CCNA_02271: CCNA_02271 - stalk cross-band protein StpD, at 2,423,833 to 2,424,618
_02271
CCNA_02272: CCNA_02272 - hypothetical protein, at 2,424,687 to 2,424,929
_02272
CCNA_02273: CCNA_02273 - glutathione peroxidase, at 2,424,964 to 2,425,212
_02273
CCNA_02274: CCNA_02274 - EF-Hand domain protein, at 2,425,338 to 2,425,823
_02274
CCNA_02275: CCNA_02275 - ABC transporter, periplasmic component, at 2,425,820 to 2,426,605
_02275
CCNA_02277: CCNA_02277 - TonB-dependent outer membrane channel, at 2,426,768 to 2,428,969
_02277
Position (kb)
2425
2426 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2424.370 kb on - strand, within CCNA_02271 at 2424.443 kb on + strand, within CCNA_02271 at 2424.577 kb on - strand at 2424.648 kb on + strand at 2424.747 kb on + strand, within CCNA_02272 at 2424.755 kb on - strand, within CCNA_02272 at 2424.805 kb on - strand, within CCNA_02272 at 2424.852 kb on + strand, within CCNA_02272 at 2424.904 kb on - strand, within CCNA_02272 at 2424.962 kb on + strand at 2425.006 kb on - strand, within CCNA_02273 at 2425.248 kb on + strand at 2425.343 kb on - strand at 2425.576 kb on + strand, within CCNA_02274 at 2425.576 kb on + strand, within CCNA_02274 at 2425.584 kb on - strand, within CCNA_02274 at 2425.584 kb on - strand, within CCNA_02274 at 2425.649 kb on - strand, within CCNA_02274 at 2425.740 kb on + strand, within CCNA_02274 at 2425.746 kb on + strand, within CCNA_02274 at 2425.772 kb on - strand, within CCNA_02274 at 2425.782 kb on + strand at 2425.782 kb on + strand at 2425.782 kb on + strand at 2425.790 kb on + strand at 2425.790 kb on - strand at 2425.838 kb on + strand at 2425.856 kb on + strand at 2426.013 kb on - strand, within CCNA_02275 at 2426.015 kb on + strand, within CCNA_02275 at 2426.020 kb on + strand, within CCNA_02275 at 2426.075 kb on + strand, within CCNA_02275 at 2426.120 kb on + strand, within CCNA_02275 at 2426.120 kb on - strand, within CCNA_02275 at 2426.127 kb on + strand, within CCNA_02275 at 2426.128 kb on - strand, within CCNA_02275 at 2426.191 kb on + strand, within CCNA_02275 at 2426.192 kb on + strand, within CCNA_02275 at 2426.193 kb on + strand, within CCNA_02275 at 2426.195 kb on - strand, within CCNA_02275 at 2426.199 kb on - strand, within CCNA_02275 at 2426.199 kb on - strand, within CCNA_02275 at 2426.199 kb on - strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.264 kb on - strand, within CCNA_02275 at 2426.264 kb on - strand, within CCNA_02275 at 2426.264 kb on - strand, within CCNA_02275 at 2426.291 kb on + strand, within CCNA_02275 at 2426.304 kb on - strand, within CCNA_02275 at 2426.324 kb on - strand, within CCNA_02275 at 2426.331 kb on + strand, within CCNA_02275 at 2426.337 kb on + strand, within CCNA_02275 at 2426.347 kb on + strand, within CCNA_02275 at 2426.355 kb on - strand, within CCNA_02275 at 2426.390 kb on - strand, within CCNA_02275 at 2426.415 kb on - strand, within CCNA_02275 at 2426.415 kb on - strand, within CCNA_02275 at 2426.458 kb on - strand, within CCNA_02275 at 2426.465 kb on + strand, within CCNA_02275 at 2426.465 kb on + strand, within CCNA_02275 at 2426.473 kb on - strand, within CCNA_02275 at 2426.473 kb on - strand, within CCNA_02275 at 2426.531 kb on + strand at 2426.558 kb on + strand at 2426.576 kb on + strand at 2426.584 kb on - strand at 2426.622 kb on - strand at 2426.682 kb on + strand at 2426.695 kb on - strand at 2426.725 kb on + strand at 2426.733 kb on + strand at 2426.751 kb on + strand at 2426.751 kb on + strand at 2426.759 kb on - strand at 2426.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,424,370 - CCNA_02271 0.68 -0.0 2,424,443 + CCNA_02271 0.78 +0.9 2,424,577 - +1.9 2,424,648 + -0.6 2,424,747 + CCNA_02272 0.25 -0.6 2,424,755 - CCNA_02272 0.28 +0.0 2,424,805 - CCNA_02272 0.49 -0.5 2,424,852 + CCNA_02272 0.68 -0.6 2,424,904 - CCNA_02272 0.89 +0.9 2,424,962 + -0.1 2,425,006 - CCNA_02273 0.17 +0.7 2,425,248 + +0.1 2,425,343 - -0.1 2,425,576 + CCNA_02274 0.49 -0.1 2,425,576 + CCNA_02274 0.49 -0.7 2,425,584 - CCNA_02274 0.51 -0.3 2,425,584 - CCNA_02274 0.51 +0.6 2,425,649 - CCNA_02274 0.64 -0.1 2,425,740 + CCNA_02274 0.83 -0.0 2,425,746 + CCNA_02274 0.84 -0.4 2,425,772 - CCNA_02274 0.89 +1.5 2,425,782 + +0.9 2,425,782 + -0.3 2,425,782 + -0.9 2,425,790 + -1.1 2,425,790 - +0.8 2,425,838 + +0.6 2,425,856 + +0.4 2,426,013 - CCNA_02275 0.25 +0.8 2,426,015 + CCNA_02275 0.25 -0.9 2,426,020 + CCNA_02275 0.25 -0.8 2,426,075 + CCNA_02275 0.32 -0.1 2,426,120 + CCNA_02275 0.38 -1.9 2,426,120 - CCNA_02275 0.38 -0.5 2,426,127 + CCNA_02275 0.39 -0.1 2,426,128 - CCNA_02275 0.39 +0.2 2,426,191 + CCNA_02275 0.47 -0.4 2,426,192 + CCNA_02275 0.47 +0.1 2,426,193 + CCNA_02275 0.47 -0.4 2,426,195 - CCNA_02275 0.48 -0.6 2,426,199 - CCNA_02275 0.48 +0.3 2,426,199 - CCNA_02275 0.48 +0.4 2,426,199 - CCNA_02275 0.48 +0.3 2,426,256 + CCNA_02275 0.55 +0.3 2,426,256 + CCNA_02275 0.55 -0.8 2,426,256 + CCNA_02275 0.55 +0.1 2,426,256 + CCNA_02275 0.55 -1.4 2,426,264 - CCNA_02275 0.56 +0.9 2,426,264 - CCNA_02275 0.56 +0.3 2,426,264 - CCNA_02275 0.56 -0.2 2,426,291 + CCNA_02275 0.60 -1.9 2,426,304 - CCNA_02275 0.62 +0.0 2,426,324 - CCNA_02275 0.64 +0.1 2,426,331 + CCNA_02275 0.65 -1.2 2,426,337 + CCNA_02275 0.66 +0.2 2,426,347 + CCNA_02275 0.67 -0.1 2,426,355 - CCNA_02275 0.68 +0.6 2,426,390 - CCNA_02275 0.73 +0.7 2,426,415 - CCNA_02275 0.76 +0.2 2,426,415 - CCNA_02275 0.76 +0.9 2,426,458 - CCNA_02275 0.81 +0.7 2,426,465 + CCNA_02275 0.82 +0.5 2,426,465 + CCNA_02275 0.82 -1.6 2,426,473 - CCNA_02275 0.83 +0.1 2,426,473 - CCNA_02275 0.83 +1.6 2,426,531 + +1.3 2,426,558 + -0.5 2,426,576 + +1.1 2,426,584 - +1.0 2,426,622 - -0.2 2,426,682 + +0.5 2,426,695 - -3.2 2,426,725 + +0.6 2,426,733 + +0.3 2,426,751 + +0.5 2,426,751 + +0.4 2,426,759 - +0.1 2,426,759 - -0.4
Or see this region's nucleotide sequence