Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02250 and CCNA_02251 are separated by 60 nucleotides CCNA_02251 and CCNA_02252 are separated by 21 nucleotides
CCNA_02250: CCNA_02250 - methylcrotonyl-CoA carboxylase biotin-containing subunit, at 2,397,843 to 2,399,807
_02250
CCNA_02251: CCNA_02251 - methylglutaconyl-CoA hydratase, at 2,399,868 to 2,400,707
_02251
CCNA_02252: CCNA_02252 - methylcrotonyl-CoA carboxylase carboxyl transferase subunit, at 2,400,729 to 2,402,321
_02252
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-2
-1
0
1 at 2398.879 kb on - strand, within CCNA_02250 at 2398.966 kb on - strand, within CCNA_02250 at 2398.993 kb on - strand, within CCNA_02250 at 2399.014 kb on - strand, within CCNA_02250 at 2399.023 kb on + strand, within CCNA_02250 at 2399.023 kb on + strand, within CCNA_02250 at 2399.031 kb on - strand, within CCNA_02250 at 2399.038 kb on + strand, within CCNA_02250 at 2399.273 kb on + strand, within CCNA_02250 at 2399.296 kb on + strand, within CCNA_02250 at 2399.298 kb on - strand, within CCNA_02250 at 2399.309 kb on - strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.332 kb on + strand, within CCNA_02250 at 2399.426 kb on + strand, within CCNA_02250 at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.621 kb on + strand at 2399.668 kb on - strand at 2399.797 kb on + strand at 2399.797 kb on + strand at 2399.800 kb on - strand at 2399.805 kb on - strand at 2399.822 kb on - strand at 2399.845 kb on - strand at 2399.868 kb on - strand at 2400.125 kb on - strand, within CCNA_02251 at 2400.130 kb on - strand, within CCNA_02251 at 2400.244 kb on - strand, within CCNA_02251 at 2400.311 kb on - strand, within CCNA_02251 at 2400.311 kb on - strand, within CCNA_02251 at 2400.329 kb on - strand, within CCNA_02251 at 2400.329 kb on - strand, within CCNA_02251 at 2400.466 kb on - strand, within CCNA_02251 at 2400.533 kb on - strand, within CCNA_02251 at 2400.838 kb on + strand at 2400.838 kb on + strand at 2400.846 kb on - strand at 2400.846 kb on - strand at 2400.846 kb on - strand at 2400.910 kb on + strand, within CCNA_02252 at 2400.923 kb on - strand, within CCNA_02252 at 2401.014 kb on + strand, within CCNA_02252 at 2401.123 kb on + strand, within CCNA_02252 at 2401.123 kb on + strand, within CCNA_02252 at 2401.124 kb on - strand, within CCNA_02252 at 2401.131 kb on - strand, within CCNA_02252 at 2401.133 kb on + strand, within CCNA_02252 at 2401.162 kb on + strand, within CCNA_02252 at 2401.315 kb on + strand, within CCNA_02252 at 2401.323 kb on - strand, within CCNA_02252 at 2401.323 kb on - strand, within CCNA_02252 at 2401.323 kb on - strand, within CCNA_02252 at 2401.348 kb on + strand, within CCNA_02252 at 2401.360 kb on + strand, within CCNA_02252 at 2401.368 kb on - strand, within CCNA_02252 at 2401.383 kb on + strand, within CCNA_02252 at 2401.450 kb on + strand, within CCNA_02252 at 2401.484 kb on - strand, within CCNA_02252 at 2401.592 kb on + strand, within CCNA_02252 at 2401.604 kb on + strand, within CCNA_02252 at 2401.613 kb on - strand, within CCNA_02252 at 2401.621 kb on - strand, within CCNA_02252 at 2401.660 kb on + strand, within CCNA_02252 at 2401.660 kb on + strand, within CCNA_02252 at 2401.668 kb on - strand, within CCNA_02252 at 2401.701 kb on - strand, within CCNA_02252
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,398,879 - CCNA_02250 0.53 +0.9 2,398,966 - CCNA_02250 0.57 -0.3 2,398,993 - CCNA_02250 0.59 -0.1 2,399,014 - CCNA_02250 0.60 -0.8 2,399,023 + CCNA_02250 0.60 +0.7 2,399,023 + CCNA_02250 0.60 +0.9 2,399,031 - CCNA_02250 0.60 -0.5 2,399,038 + CCNA_02250 0.61 -2.5 2,399,273 + CCNA_02250 0.73 -0.3 2,399,296 + CCNA_02250 0.74 -0.4 2,399,298 - CCNA_02250 0.74 -0.9 2,399,309 - CCNA_02250 0.75 -0.5 2,399,332 + CCNA_02250 0.76 +0.3 2,399,332 + CCNA_02250 0.76 +0.3 2,399,332 + CCNA_02250 0.76 -2.2 2,399,332 + CCNA_02250 0.76 -1.4 2,399,332 + CCNA_02250 0.76 +0.5 2,399,332 + CCNA_02250 0.76 -0.8 2,399,426 + CCNA_02250 0.81 +0.7 2,399,621 + -0.4 2,399,621 + -0.2 2,399,621 + -1.0 2,399,621 + -0.3 2,399,621 + -0.7 2,399,668 - +0.7 2,399,797 + -1.5 2,399,797 + -1.3 2,399,800 - +0.3 2,399,805 - -0.6 2,399,822 - +0.3 2,399,845 - +1.2 2,399,868 - +0.6 2,400,125 - CCNA_02251 0.31 -1.9 2,400,130 - CCNA_02251 0.31 -0.5 2,400,244 - CCNA_02251 0.45 +0.7 2,400,311 - CCNA_02251 0.53 -0.7 2,400,311 - CCNA_02251 0.53 -0.1 2,400,329 - CCNA_02251 0.55 -2.0 2,400,329 - CCNA_02251 0.55 -1.3 2,400,466 - CCNA_02251 0.71 -1.2 2,400,533 - CCNA_02251 0.79 +0.7 2,400,838 + +0.5 2,400,838 + -0.8 2,400,846 - -0.5 2,400,846 - -0.0 2,400,846 - +0.0 2,400,910 + CCNA_02252 0.11 -0.3 2,400,923 - CCNA_02252 0.12 +0.5 2,401,014 + CCNA_02252 0.18 +0.7 2,401,123 + CCNA_02252 0.25 -1.0 2,401,123 + CCNA_02252 0.25 -0.1 2,401,124 - CCNA_02252 0.25 +1.1 2,401,131 - CCNA_02252 0.25 -0.0 2,401,133 + CCNA_02252 0.25 -0.8 2,401,162 + CCNA_02252 0.27 -0.6 2,401,315 + CCNA_02252 0.37 -1.9 2,401,323 - CCNA_02252 0.37 -1.5 2,401,323 - CCNA_02252 0.37 -0.9 2,401,323 - CCNA_02252 0.37 -0.7 2,401,348 + CCNA_02252 0.39 -2.2 2,401,360 + CCNA_02252 0.40 -2.4 2,401,368 - CCNA_02252 0.40 -0.5 2,401,383 + CCNA_02252 0.41 -0.1 2,401,450 + CCNA_02252 0.45 -1.1 2,401,484 - CCNA_02252 0.47 +0.2 2,401,592 + CCNA_02252 0.54 -1.8 2,401,604 + CCNA_02252 0.55 +0.6 2,401,613 - CCNA_02252 0.55 +0.0 2,401,621 - CCNA_02252 0.56 -1.2 2,401,660 + CCNA_02252 0.58 +0.6 2,401,660 + CCNA_02252 0.58 +0.9 2,401,668 - CCNA_02252 0.59 -1.0 2,401,701 - CCNA_02252 0.61 -1.0
Or see this region's nucleotide sequence