Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02179

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02178 and CCNA_02179 are separated by 230 nucleotidesCCNA_02179 and CCNA_02180 are separated by 117 nucleotides CCNA_02178: CCNA_02178 - short-chain alcohol dehydrogenase, at 2,329,001 to 2,329,906 _02178 CCNA_02179: CCNA_02179 - long-chain fatty acid transport protein precursor, at 2,330,137 to 2,331,435 _02179 CCNA_02180: CCNA_02180 - iron-sulfur cluster assembly/repair protein ApbC, at 2,331,553 to 2,332,653 _02180 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -2 -1 0 1 2at 2329.160 kb on + strand, within CCNA_02178at 2329.259 kb on - strand, within CCNA_02178at 2329.261 kb on + strand, within CCNA_02178at 2329.261 kb on + strand, within CCNA_02178at 2329.261 kb on + strand, within CCNA_02178at 2329.270 kb on - strand, within CCNA_02178at 2329.280 kb on - strand, within CCNA_02178at 2329.305 kb on + strand, within CCNA_02178at 2329.305 kb on + strand, within CCNA_02178at 2329.335 kb on + strand, within CCNA_02178at 2329.343 kb on - strand, within CCNA_02178at 2329.350 kb on + strand, within CCNA_02178at 2329.360 kb on + strand, within CCNA_02178at 2329.360 kb on + strand, within CCNA_02178at 2329.386 kb on + strand, within CCNA_02178at 2329.404 kb on - strand, within CCNA_02178at 2329.406 kb on + strand, within CCNA_02178at 2329.484 kb on + strand, within CCNA_02178at 2329.487 kb on - strand, within CCNA_02178at 2329.528 kb on + strand, within CCNA_02178at 2329.536 kb on - strand, within CCNA_02178at 2329.636 kb on + strand, within CCNA_02178at 2329.644 kb on - strand, within CCNA_02178at 2329.681 kb on - strand, within CCNA_02178at 2329.749 kb on - strand, within CCNA_02178at 2329.756 kb on + strand, within CCNA_02178at 2329.825 kb on - strandat 2329.825 kb on - strandat 2329.871 kb on + strandat 2329.879 kb on - strandat 2329.879 kb on - strandat 2330.068 kb on - strandat 2330.068 kb on - strandat 2330.129 kb on + strandat 2330.129 kb on + strandat 2330.129 kb on + strandat 2330.129 kb on + strandat 2330.195 kb on + strandat 2330.197 kb on + strandat 2330.197 kb on + strandat 2330.292 kb on - strand, within CCNA_02179at 2330.336 kb on + strand, within CCNA_02179at 2330.341 kb on + strand, within CCNA_02179at 2330.363 kb on - strand, within CCNA_02179at 2330.390 kb on - strand, within CCNA_02179at 2330.398 kb on + strand, within CCNA_02179at 2330.433 kb on - strand, within CCNA_02179at 2330.466 kb on - strand, within CCNA_02179at 2330.536 kb on - strand, within CCNA_02179at 2330.559 kb on - strand, within CCNA_02179at 2330.566 kb on + strand, within CCNA_02179at 2330.617 kb on - strand, within CCNA_02179at 2330.655 kb on + strand, within CCNA_02179at 2330.710 kb on + strand, within CCNA_02179at 2330.715 kb on + strand, within CCNA_02179at 2330.725 kb on - strand, within CCNA_02179at 2330.727 kb on + strand, within CCNA_02179at 2330.727 kb on + strand, within CCNA_02179at 2330.727 kb on + strand, within CCNA_02179at 2330.735 kb on - strand, within CCNA_02179at 2330.889 kb on + strand, within CCNA_02179at 2330.890 kb on + strand, within CCNA_02179at 2330.896 kb on + strand, within CCNA_02179at 2330.898 kb on - strand, within CCNA_02179at 2330.913 kb on - strand, within CCNA_02179at 2330.943 kb on - strand, within CCNA_02179at 2330.943 kb on - strand, within CCNA_02179at 2330.954 kb on - strand, within CCNA_02179at 2330.954 kb on - strand, within CCNA_02179at 2330.954 kb on - strand, within CCNA_02179at 2330.961 kb on + strand, within CCNA_02179at 2330.961 kb on + strand, within CCNA_02179at 2330.961 kb on + strand, within CCNA_02179at 2330.961 kb on + strand, within CCNA_02179at 2330.969 kb on - strand, within CCNA_02179at 2331.018 kb on - strand, within CCNA_02179at 2331.094 kb on + strand, within CCNA_02179at 2331.110 kb on - strand, within CCNA_02179at 2331.110 kb on - strand, within CCNA_02179at 2331.155 kb on + strand, within CCNA_02179at 2331.244 kb on + strand, within CCNA_02179at 2331.252 kb on - strand, within CCNA_02179at 2331.261 kb on + strand, within CCNA_02179at 2331.296 kb on - strand, within CCNA_02179at 2331.313 kb on - strandat 2331.357 kb on + strandat 2331.359 kb on + strandat 2331.367 kb on - strandat 2331.385 kb on + strandat 2331.436 kb on + strandat 2331.536 kb on - strandat 2332.354 kb on - strand, within CCNA_02180

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,329,160 + CCNA_02178 0.18 +0.1
2,329,259 - CCNA_02178 0.28 -0.5
2,329,261 + CCNA_02178 0.29 -0.1
2,329,261 + CCNA_02178 0.29 +0.4
2,329,261 + CCNA_02178 0.29 +0.0
2,329,270 - CCNA_02178 0.30 -1.0
2,329,280 - CCNA_02178 0.31 +0.7
2,329,305 + CCNA_02178 0.34 +0.2
2,329,305 + CCNA_02178 0.34 -0.1
2,329,335 + CCNA_02178 0.37 -0.3
2,329,343 - CCNA_02178 0.38 -0.7
2,329,350 + CCNA_02178 0.39 +0.6
2,329,360 + CCNA_02178 0.40 -0.1
2,329,360 + CCNA_02178 0.40 -0.3
2,329,386 + CCNA_02178 0.42 +0.6
2,329,404 - CCNA_02178 0.44 -0.3
2,329,406 + CCNA_02178 0.45 +2.0
2,329,484 + CCNA_02178 0.53 +0.0
2,329,487 - CCNA_02178 0.54 -1.0
2,329,528 + CCNA_02178 0.58 -0.2
2,329,536 - CCNA_02178 0.59 -0.0
2,329,636 + CCNA_02178 0.70 -0.4
2,329,644 - CCNA_02178 0.71 -0.3
2,329,681 - CCNA_02178 0.75 -0.1
2,329,749 - CCNA_02178 0.83 -0.2
2,329,756 + CCNA_02178 0.83 +1.3
2,329,825 - -1.3
2,329,825 - -0.5
2,329,871 + +0.4
2,329,879 - -0.8
2,329,879 - +1.9
2,330,068 - +1.1
2,330,068 - -0.1
2,330,129 + +1.1
2,330,129 + +0.4
2,330,129 + -0.1
2,330,129 + -0.5
2,330,195 + -1.2
2,330,197 + -1.6
2,330,197 + +1.5
2,330,292 - CCNA_02179 0.12 +2.4
2,330,336 + CCNA_02179 0.15 -0.0
2,330,341 + CCNA_02179 0.16 +1.1
2,330,363 - CCNA_02179 0.17 -1.5
2,330,390 - CCNA_02179 0.19 -0.8
2,330,398 + CCNA_02179 0.20 +0.3
2,330,433 - CCNA_02179 0.23 +0.2
2,330,466 - CCNA_02179 0.25 -0.5
2,330,536 - CCNA_02179 0.31 +0.7
2,330,559 - CCNA_02179 0.32 -1.8
2,330,566 + CCNA_02179 0.33 -0.1
2,330,617 - CCNA_02179 0.37 -0.3
2,330,655 + CCNA_02179 0.40 +0.3
2,330,710 + CCNA_02179 0.44 +0.4
2,330,715 + CCNA_02179 0.44 +2.0
2,330,725 - CCNA_02179 0.45 -0.7
2,330,727 + CCNA_02179 0.45 +0.1
2,330,727 + CCNA_02179 0.45 +0.4
2,330,727 + CCNA_02179 0.45 +0.6
2,330,735 - CCNA_02179 0.46 +0.1
2,330,889 + CCNA_02179 0.58 +0.6
2,330,890 + CCNA_02179 0.58 +1.0
2,330,896 + CCNA_02179 0.58 -0.6
2,330,898 - CCNA_02179 0.59 +0.2
2,330,913 - CCNA_02179 0.60 -0.1
2,330,943 - CCNA_02179 0.62 -0.7
2,330,943 - CCNA_02179 0.62 -0.2
2,330,954 - CCNA_02179 0.63 -0.4
2,330,954 - CCNA_02179 0.63 +0.3
2,330,954 - CCNA_02179 0.63 +0.8
2,330,961 + CCNA_02179 0.63 +0.3
2,330,961 + CCNA_02179 0.63 +0.2
2,330,961 + CCNA_02179 0.63 +0.1
2,330,961 + CCNA_02179 0.63 +0.4
2,330,969 - CCNA_02179 0.64 -1.9
2,331,018 - CCNA_02179 0.68 +1.5
2,331,094 + CCNA_02179 0.74 -0.1
2,331,110 - CCNA_02179 0.75 -0.6
2,331,110 - CCNA_02179 0.75 +0.6
2,331,155 + CCNA_02179 0.78 +0.9
2,331,244 + CCNA_02179 0.85 -0.5
2,331,252 - CCNA_02179 0.86 -0.1
2,331,261 + CCNA_02179 0.87 +0.3
2,331,296 - CCNA_02179 0.89 +0.3
2,331,313 - +1.0
2,331,357 + +0.4
2,331,359 + +0.9
2,331,367 - +0.2
2,331,385 + +0.4
2,331,436 + +0.6
2,331,536 - +0.1
2,332,354 - CCNA_02180 0.73 -0.5

Or see this region's nucleotide sequence