Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02178 and CCNA_02179 are separated by 230 nucleotides CCNA_02179 and CCNA_02180 are separated by 117 nucleotides
CCNA_02178: CCNA_02178 - short-chain alcohol dehydrogenase, at 2,329,001 to 2,329,906
_02178
CCNA_02179: CCNA_02179 - long-chain fatty acid transport protein precursor, at 2,330,137 to 2,331,435
_02179
CCNA_02180: CCNA_02180 - iron-sulfur cluster assembly/repair protein ApbC, at 2,331,553 to 2,332,653
_02180
Position (kb)
2330
2331
2332 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2329.160 kb on + strand, within CCNA_02178 at 2329.259 kb on - strand, within CCNA_02178 at 2329.261 kb on + strand, within CCNA_02178 at 2329.261 kb on + strand, within CCNA_02178 at 2329.261 kb on + strand, within CCNA_02178 at 2329.270 kb on - strand, within CCNA_02178 at 2329.280 kb on - strand, within CCNA_02178 at 2329.305 kb on + strand, within CCNA_02178 at 2329.305 kb on + strand, within CCNA_02178 at 2329.335 kb on + strand, within CCNA_02178 at 2329.343 kb on - strand, within CCNA_02178 at 2329.350 kb on + strand, within CCNA_02178 at 2329.360 kb on + strand, within CCNA_02178 at 2329.360 kb on + strand, within CCNA_02178 at 2329.386 kb on + strand, within CCNA_02178 at 2329.404 kb on - strand, within CCNA_02178 at 2329.406 kb on + strand, within CCNA_02178 at 2329.484 kb on + strand, within CCNA_02178 at 2329.487 kb on - strand, within CCNA_02178 at 2329.528 kb on + strand, within CCNA_02178 at 2329.536 kb on - strand, within CCNA_02178 at 2329.636 kb on + strand, within CCNA_02178 at 2329.644 kb on - strand, within CCNA_02178 at 2329.681 kb on - strand, within CCNA_02178 at 2329.749 kb on - strand, within CCNA_02178 at 2329.756 kb on + strand, within CCNA_02178 at 2329.825 kb on - strand at 2329.825 kb on - strand at 2329.871 kb on + strand at 2329.879 kb on - strand at 2329.879 kb on - strand at 2330.068 kb on - strand at 2330.068 kb on - strand at 2330.129 kb on + strand at 2330.129 kb on + strand at 2330.129 kb on + strand at 2330.129 kb on + strand at 2330.195 kb on + strand at 2330.197 kb on + strand at 2330.197 kb on + strand at 2330.292 kb on - strand, within CCNA_02179 at 2330.336 kb on + strand, within CCNA_02179 at 2330.341 kb on + strand, within CCNA_02179 at 2330.363 kb on - strand, within CCNA_02179 at 2330.390 kb on - strand, within CCNA_02179 at 2330.398 kb on + strand, within CCNA_02179 at 2330.433 kb on - strand, within CCNA_02179 at 2330.466 kb on - strand, within CCNA_02179 at 2330.536 kb on - strand, within CCNA_02179 at 2330.559 kb on - strand, within CCNA_02179 at 2330.566 kb on + strand, within CCNA_02179 at 2330.617 kb on - strand, within CCNA_02179 at 2330.655 kb on + strand, within CCNA_02179 at 2330.710 kb on + strand, within CCNA_02179 at 2330.715 kb on + strand, within CCNA_02179 at 2330.725 kb on - strand, within CCNA_02179 at 2330.727 kb on + strand, within CCNA_02179 at 2330.727 kb on + strand, within CCNA_02179 at 2330.727 kb on + strand, within CCNA_02179 at 2330.735 kb on - strand, within CCNA_02179 at 2330.889 kb on + strand, within CCNA_02179 at 2330.890 kb on + strand, within CCNA_02179 at 2330.896 kb on + strand, within CCNA_02179 at 2330.898 kb on - strand, within CCNA_02179 at 2330.913 kb on - strand, within CCNA_02179 at 2330.943 kb on - strand, within CCNA_02179 at 2330.943 kb on - strand, within CCNA_02179 at 2330.954 kb on - strand, within CCNA_02179 at 2330.954 kb on - strand, within CCNA_02179 at 2330.954 kb on - strand, within CCNA_02179 at 2330.961 kb on + strand, within CCNA_02179 at 2330.961 kb on + strand, within CCNA_02179 at 2330.961 kb on + strand, within CCNA_02179 at 2330.961 kb on + strand, within CCNA_02179 at 2330.969 kb on - strand, within CCNA_02179 at 2331.018 kb on - strand, within CCNA_02179 at 2331.094 kb on + strand, within CCNA_02179 at 2331.110 kb on - strand, within CCNA_02179 at 2331.110 kb on - strand, within CCNA_02179 at 2331.155 kb on + strand, within CCNA_02179 at 2331.244 kb on + strand, within CCNA_02179 at 2331.252 kb on - strand, within CCNA_02179 at 2331.261 kb on + strand, within CCNA_02179 at 2331.296 kb on - strand, within CCNA_02179 at 2331.313 kb on - strand at 2331.357 kb on + strand at 2331.359 kb on + strand at 2331.367 kb on - strand at 2331.385 kb on + strand at 2331.436 kb on + strand at 2331.536 kb on - strand at 2332.354 kb on - strand, within CCNA_02180
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,329,160 + CCNA_02178 0.18 +0.1 2,329,259 - CCNA_02178 0.28 -0.5 2,329,261 + CCNA_02178 0.29 -0.1 2,329,261 + CCNA_02178 0.29 +0.4 2,329,261 + CCNA_02178 0.29 +0.0 2,329,270 - CCNA_02178 0.30 -1.0 2,329,280 - CCNA_02178 0.31 +0.7 2,329,305 + CCNA_02178 0.34 +0.2 2,329,305 + CCNA_02178 0.34 -0.1 2,329,335 + CCNA_02178 0.37 -0.3 2,329,343 - CCNA_02178 0.38 -0.7 2,329,350 + CCNA_02178 0.39 +0.6 2,329,360 + CCNA_02178 0.40 -0.1 2,329,360 + CCNA_02178 0.40 -0.3 2,329,386 + CCNA_02178 0.42 +0.6 2,329,404 - CCNA_02178 0.44 -0.3 2,329,406 + CCNA_02178 0.45 +2.0 2,329,484 + CCNA_02178 0.53 +0.0 2,329,487 - CCNA_02178 0.54 -1.0 2,329,528 + CCNA_02178 0.58 -0.2 2,329,536 - CCNA_02178 0.59 -0.0 2,329,636 + CCNA_02178 0.70 -0.4 2,329,644 - CCNA_02178 0.71 -0.3 2,329,681 - CCNA_02178 0.75 -0.1 2,329,749 - CCNA_02178 0.83 -0.2 2,329,756 + CCNA_02178 0.83 +1.3 2,329,825 - -1.3 2,329,825 - -0.5 2,329,871 + +0.4 2,329,879 - -0.8 2,329,879 - +1.9 2,330,068 - +1.1 2,330,068 - -0.1 2,330,129 + +1.1 2,330,129 + +0.4 2,330,129 + -0.1 2,330,129 + -0.5 2,330,195 + -1.2 2,330,197 + -1.6 2,330,197 + +1.5 2,330,292 - CCNA_02179 0.12 +2.4 2,330,336 + CCNA_02179 0.15 -0.0 2,330,341 + CCNA_02179 0.16 +1.1 2,330,363 - CCNA_02179 0.17 -1.5 2,330,390 - CCNA_02179 0.19 -0.8 2,330,398 + CCNA_02179 0.20 +0.3 2,330,433 - CCNA_02179 0.23 +0.2 2,330,466 - CCNA_02179 0.25 -0.5 2,330,536 - CCNA_02179 0.31 +0.7 2,330,559 - CCNA_02179 0.32 -1.8 2,330,566 + CCNA_02179 0.33 -0.1 2,330,617 - CCNA_02179 0.37 -0.3 2,330,655 + CCNA_02179 0.40 +0.3 2,330,710 + CCNA_02179 0.44 +0.4 2,330,715 + CCNA_02179 0.44 +2.0 2,330,725 - CCNA_02179 0.45 -0.7 2,330,727 + CCNA_02179 0.45 +0.1 2,330,727 + CCNA_02179 0.45 +0.4 2,330,727 + CCNA_02179 0.45 +0.6 2,330,735 - CCNA_02179 0.46 +0.1 2,330,889 + CCNA_02179 0.58 +0.6 2,330,890 + CCNA_02179 0.58 +1.0 2,330,896 + CCNA_02179 0.58 -0.6 2,330,898 - CCNA_02179 0.59 +0.2 2,330,913 - CCNA_02179 0.60 -0.1 2,330,943 - CCNA_02179 0.62 -0.7 2,330,943 - CCNA_02179 0.62 -0.2 2,330,954 - CCNA_02179 0.63 -0.4 2,330,954 - CCNA_02179 0.63 +0.3 2,330,954 - CCNA_02179 0.63 +0.8 2,330,961 + CCNA_02179 0.63 +0.3 2,330,961 + CCNA_02179 0.63 +0.2 2,330,961 + CCNA_02179 0.63 +0.1 2,330,961 + CCNA_02179 0.63 +0.4 2,330,969 - CCNA_02179 0.64 -1.9 2,331,018 - CCNA_02179 0.68 +1.5 2,331,094 + CCNA_02179 0.74 -0.1 2,331,110 - CCNA_02179 0.75 -0.6 2,331,110 - CCNA_02179 0.75 +0.6 2,331,155 + CCNA_02179 0.78 +0.9 2,331,244 + CCNA_02179 0.85 -0.5 2,331,252 - CCNA_02179 0.86 -0.1 2,331,261 + CCNA_02179 0.87 +0.3 2,331,296 - CCNA_02179 0.89 +0.3 2,331,313 - +1.0 2,331,357 + +0.4 2,331,359 + +0.9 2,331,367 - +0.2 2,331,385 + +0.4 2,331,436 + +0.6 2,331,536 - +0.1 2,332,354 - CCNA_02180 0.73 -0.5
Or see this region's nucleotide sequence