Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02130

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02129 and CCNA_02130 are separated by 64 nucleotidesCCNA_02130 and CCNA_02131 are separated by 19 nucleotides CCNA_02129: CCNA_02129 - acyl-CoA dehydrogenase, short-chain specific, at 2,282,731 to 2,283,864 _02129 CCNA_02130: CCNA_02130 - pyruvate kinase, at 2,283,929 to 2,285,359 _02130 CCNA_02131: CCNA_02131 - glucan 1,4-beta-glucosidase, at 2,285,379 to 2,287,844 _02131 Position (kb) 2283 2284 2285 2286Strain fitness (log2 ratio) -2 -1 0 1 2at 2282.934 kb on - strand, within CCNA_02129at 2282.934 kb on - strand, within CCNA_02129at 2282.936 kb on + strand, within CCNA_02129at 2282.936 kb on + strand, within CCNA_02129at 2282.944 kb on - strand, within CCNA_02129at 2282.944 kb on - strand, within CCNA_02129at 2283.130 kb on - strand, within CCNA_02129at 2283.169 kb on + strand, within CCNA_02129at 2283.207 kb on - strand, within CCNA_02129at 2283.223 kb on - strand, within CCNA_02129at 2283.251 kb on - strand, within CCNA_02129at 2283.280 kb on - strand, within CCNA_02129at 2283.280 kb on - strand, within CCNA_02129at 2283.282 kb on + strand, within CCNA_02129at 2283.285 kb on - strand, within CCNA_02129at 2283.285 kb on - strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.444 kb on - strand, within CCNA_02129at 2283.444 kb on - strand, within CCNA_02129at 2283.444 kb on - strand, within CCNA_02129at 2283.505 kb on + strand, within CCNA_02129at 2283.513 kb on - strand, within CCNA_02129at 2283.513 kb on - strand, within CCNA_02129at 2283.555 kb on + strand, within CCNA_02129at 2283.564 kb on - strand, within CCNA_02129at 2283.565 kb on + strand, within CCNA_02129at 2283.565 kb on + strand, within CCNA_02129at 2283.573 kb on - strand, within CCNA_02129at 2283.603 kb on - strand, within CCNA_02129at 2283.605 kb on - strand, within CCNA_02129at 2283.605 kb on - strand, within CCNA_02129at 2283.605 kb on - strand, within CCNA_02129at 2283.626 kb on - strand, within CCNA_02129at 2283.664 kb on + strand, within CCNA_02129at 2283.692 kb on - strand, within CCNA_02129at 2283.786 kb on - strandat 2283.800 kb on + strandat 2283.876 kb on + strandat 2283.927 kb on + strandat 2284.045 kb on - strandat 2284.048 kb on + strandat 2284.050 kb on - strandat 2284.057 kb on - strandat 2284.057 kb on - strandat 2284.084 kb on + strand, within CCNA_02130at 2284.085 kb on - strand, within CCNA_02130at 2284.125 kb on + strand, within CCNA_02130at 2284.133 kb on - strand, within CCNA_02130at 2284.138 kb on - strand, within CCNA_02130at 2284.142 kb on + strand, within CCNA_02130at 2284.143 kb on - strand, within CCNA_02130at 2284.160 kb on - strand, within CCNA_02130at 2284.178 kb on - strand, within CCNA_02130at 2284.180 kb on - strand, within CCNA_02130at 2284.192 kb on - strand, within CCNA_02130at 2284.194 kb on - strand, within CCNA_02130at 2284.246 kb on - strand, within CCNA_02130at 2284.258 kb on + strand, within CCNA_02130at 2284.327 kb on - strand, within CCNA_02130at 2284.329 kb on + strand, within CCNA_02130at 2284.329 kb on + strand, within CCNA_02130at 2284.332 kb on - strand, within CCNA_02130at 2284.334 kb on + strand, within CCNA_02130at 2284.334 kb on + strand, within CCNA_02130at 2284.337 kb on - strand, within CCNA_02130at 2284.342 kb on - strand, within CCNA_02130at 2284.342 kb on - strand, within CCNA_02130at 2284.347 kb on - strand, within CCNA_02130at 2284.347 kb on - strand, within CCNA_02130at 2284.359 kb on + strand, within CCNA_02130at 2284.444 kb on - strand, within CCNA_02130at 2284.457 kb on + strand, within CCNA_02130at 2284.503 kb on - strand, within CCNA_02130at 2284.707 kb on + strand, within CCNA_02130at 2284.715 kb on - strand, within CCNA_02130at 2284.755 kb on + strand, within CCNA_02130at 2284.755 kb on + strand, within CCNA_02130at 2284.755 kb on + strand, within CCNA_02130at 2284.763 kb on - strand, within CCNA_02130at 2284.794 kb on - strand, within CCNA_02130at 2284.796 kb on + strand, within CCNA_02130at 2284.825 kb on + strand, within CCNA_02130at 2284.843 kb on - strand, within CCNA_02130at 2284.911 kb on - strand, within CCNA_02130at 2284.920 kb on + strand, within CCNA_02130at 2284.921 kb on - strand, within CCNA_02130at 2284.921 kb on - strand, within CCNA_02130at 2284.928 kb on - strand, within CCNA_02130at 2284.945 kb on - strand, within CCNA_02130at 2285.025 kb on - strand, within CCNA_02130at 2285.059 kb on + strand, within CCNA_02130at 2285.084 kb on + strand, within CCNA_02130at 2285.102 kb on - strand, within CCNA_02130at 2285.137 kb on + strand, within CCNA_02130at 2285.137 kb on + strand, within CCNA_02130at 2285.137 kb on + strand, within CCNA_02130at 2285.145 kb on - strand, within CCNA_02130at 2285.145 kb on - strand, within CCNA_02130at 2285.206 kb on - strand, within CCNA_02130at 2285.225 kb on + strandat 2285.268 kb on + strandat 2285.274 kb on + strandat 2285.274 kb on + strandat 2285.276 kb on - strandat 2285.282 kb on - strandat 2285.287 kb on - strandat 2285.296 kb on + strandat 2285.296 kb on + strandat 2285.304 kb on - strandat 2285.381 kb on + strandat 2285.381 kb on + strandat 2285.413 kb on - strandat 2285.546 kb on - strandat 2285.595 kb on + strandat 2285.710 kb on + strand, within CCNA_02131at 2285.727 kb on + strand, within CCNA_02131at 2285.730 kb on - strand, within CCNA_02131at 2285.732 kb on + strand, within CCNA_02131at 2285.735 kb on - strand, within CCNA_02131at 2285.735 kb on - strand, within CCNA_02131at 2285.735 kb on - strand, within CCNA_02131at 2285.740 kb on - strand, within CCNA_02131at 2285.750 kb on - strand, within CCNA_02131at 2285.788 kb on + strand, within CCNA_02131at 2285.796 kb on - strand, within CCNA_02131at 2285.829 kb on - strand, within CCNA_02131at 2285.931 kb on + strand, within CCNA_02131at 2285.931 kb on + strand, within CCNA_02131at 2285.931 kb on + strand, within CCNA_02131at 2285.931 kb on + strand, within CCNA_02131at 2285.934 kb on - strand, within CCNA_02131at 2285.936 kb on + strand, within CCNA_02131at 2285.939 kb on - strand, within CCNA_02131at 2285.939 kb on - strand, within CCNA_02131at 2285.939 kb on - strand, within CCNA_02131at 2285.939 kb on - strand, within CCNA_02131at 2285.944 kb on - strand, within CCNA_02131at 2285.944 kb on - strand, within CCNA_02131at 2286.095 kb on + strand, within CCNA_02131at 2286.126 kb on + strand, within CCNA_02131at 2286.154 kb on + strand, within CCNA_02131at 2286.205 kb on + strand, within CCNA_02131at 2286.205 kb on + strand, within CCNA_02131at 2286.213 kb on - strand, within CCNA_02131at 2286.286 kb on + strand, within CCNA_02131at 2286.286 kb on + strand, within CCNA_02131

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
2,282,934 - CCNA_02129 0.18 -0.8
2,282,934 - CCNA_02129 0.18 -2.1
2,282,936 + CCNA_02129 0.18 -0.5
2,282,936 + CCNA_02129 0.18 +0.5
2,282,944 - CCNA_02129 0.19 -0.4
2,282,944 - CCNA_02129 0.19 +0.8
2,283,130 - CCNA_02129 0.35 +0.7
2,283,169 + CCNA_02129 0.39 +0.6
2,283,207 - CCNA_02129 0.42 +0.3
2,283,223 - CCNA_02129 0.43 -0.6
2,283,251 - CCNA_02129 0.46 +0.2
2,283,280 - CCNA_02129 0.48 -0.3
2,283,280 - CCNA_02129 0.48 -1.4
2,283,282 + CCNA_02129 0.49 -0.4
2,283,285 - CCNA_02129 0.49 -0.7
2,283,285 - CCNA_02129 0.49 +0.1
2,283,414 + CCNA_02129 0.60 +0.1
2,283,414 + CCNA_02129 0.60 +1.8
2,283,414 + CCNA_02129 0.60 +0.5
2,283,414 + CCNA_02129 0.60 +0.2
2,283,444 - CCNA_02129 0.63 -0.6
2,283,444 - CCNA_02129 0.63 +0.1
2,283,444 - CCNA_02129 0.63 -1.5
2,283,505 + CCNA_02129 0.68 +0.7
2,283,513 - CCNA_02129 0.69 -0.0
2,283,513 - CCNA_02129 0.69 -0.5
2,283,555 + CCNA_02129 0.73 -0.6
2,283,564 - CCNA_02129 0.73 +1.6
2,283,565 + CCNA_02129 0.74 -0.7
2,283,565 + CCNA_02129 0.74 -0.6
2,283,573 - CCNA_02129 0.74 -0.3
2,283,603 - CCNA_02129 0.77 +0.1
2,283,605 - CCNA_02129 0.77 -0.8
2,283,605 - CCNA_02129 0.77 -0.6
2,283,605 - CCNA_02129 0.77 -0.8
2,283,626 - CCNA_02129 0.79 -0.2
2,283,664 + CCNA_02129 0.82 -0.2
2,283,692 - CCNA_02129 0.85 +0.2
2,283,786 - -0.2
2,283,800 + +0.3
2,283,876 + +0.8
2,283,927 + +0.8
2,284,045 - -1.4
2,284,048 + -0.9
2,284,050 - +0.5
2,284,057 - +0.3
2,284,057 - +0.4
2,284,084 + CCNA_02130 0.11 +1.0
2,284,085 - CCNA_02130 0.11 +0.2
2,284,125 + CCNA_02130 0.14 -0.2
2,284,133 - CCNA_02130 0.14 -0.3
2,284,138 - CCNA_02130 0.15 +0.2
2,284,142 + CCNA_02130 0.15 +0.0
2,284,143 - CCNA_02130 0.15 +0.6
2,284,160 - CCNA_02130 0.16 +0.6
2,284,178 - CCNA_02130 0.17 +0.4
2,284,180 - CCNA_02130 0.18 +0.5
2,284,192 - CCNA_02130 0.18 +0.9
2,284,194 - CCNA_02130 0.19 +0.3
2,284,246 - CCNA_02130 0.22 +0.3
2,284,258 + CCNA_02130 0.23 -1.7
2,284,327 - CCNA_02130 0.28 +0.6
2,284,329 + CCNA_02130 0.28 -2.1
2,284,329 + CCNA_02130 0.28 +0.9
2,284,332 - CCNA_02130 0.28 +0.1
2,284,334 + CCNA_02130 0.28 -0.8
2,284,334 + CCNA_02130 0.28 +0.5
2,284,337 - CCNA_02130 0.29 +0.4
2,284,342 - CCNA_02130 0.29 +0.7
2,284,342 - CCNA_02130 0.29 +1.4
2,284,347 - CCNA_02130 0.29 +0.3
2,284,347 - CCNA_02130 0.29 -0.3
2,284,359 + CCNA_02130 0.30 -0.3
2,284,444 - CCNA_02130 0.36 -0.4
2,284,457 + CCNA_02130 0.37 -0.8
2,284,503 - CCNA_02130 0.40 -0.0
2,284,707 + CCNA_02130 0.54 -0.2
2,284,715 - CCNA_02130 0.55 -2.1
2,284,755 + CCNA_02130 0.58 -0.7
2,284,755 + CCNA_02130 0.58 -2.0
2,284,755 + CCNA_02130 0.58 -1.6
2,284,763 - CCNA_02130 0.58 -0.1
2,284,794 - CCNA_02130 0.60 -0.0
2,284,796 + CCNA_02130 0.61 -1.4
2,284,825 + CCNA_02130 0.63 -0.0
2,284,843 - CCNA_02130 0.64 -0.1
2,284,911 - CCNA_02130 0.69 +0.1
2,284,920 + CCNA_02130 0.69 +0.4
2,284,921 - CCNA_02130 0.69 +0.2
2,284,921 - CCNA_02130 0.69 -1.0
2,284,928 - CCNA_02130 0.70 +1.3
2,284,945 - CCNA_02130 0.71 +0.7
2,285,025 - CCNA_02130 0.77 +0.4
2,285,059 + CCNA_02130 0.79 +0.7
2,285,084 + CCNA_02130 0.81 +0.5
2,285,102 - CCNA_02130 0.82 +0.3
2,285,137 + CCNA_02130 0.84 +0.4
2,285,137 + CCNA_02130 0.84 -0.4
2,285,137 + CCNA_02130 0.84 +0.2
2,285,145 - CCNA_02130 0.85 +0.1
2,285,145 - CCNA_02130 0.85 +1.1
2,285,206 - CCNA_02130 0.89 +0.1
2,285,225 + -2.3
2,285,268 + -0.4
2,285,274 + -1.8
2,285,274 + -1.4
2,285,276 - -0.3
2,285,282 - -0.3
2,285,287 - +0.5
2,285,296 + -0.3
2,285,296 + +0.4
2,285,304 - -0.3
2,285,381 + -0.5
2,285,381 + -0.3
2,285,413 - +1.5
2,285,546 - +0.2
2,285,595 + -0.1
2,285,710 + CCNA_02131 0.13 +1.5
2,285,727 + CCNA_02131 0.14 +0.8
2,285,730 - CCNA_02131 0.14 -0.5
2,285,732 + CCNA_02131 0.14 -0.2
2,285,735 - CCNA_02131 0.14 +0.4
2,285,735 - CCNA_02131 0.14 -0.4
2,285,735 - CCNA_02131 0.14 +0.0
2,285,740 - CCNA_02131 0.15 -0.8
2,285,750 - CCNA_02131 0.15 -2.2
2,285,788 + CCNA_02131 0.17 -0.8
2,285,796 - CCNA_02131 0.17 -1.0
2,285,829 - CCNA_02131 0.18 +0.0
2,285,931 + CCNA_02131 0.22 +0.1
2,285,931 + CCNA_02131 0.22 -1.0
2,285,931 + CCNA_02131 0.22 -1.2
2,285,931 + CCNA_02131 0.22 +0.7
2,285,934 - CCNA_02131 0.23 -0.8
2,285,936 + CCNA_02131 0.23 -0.5
2,285,939 - CCNA_02131 0.23 -1.9
2,285,939 - CCNA_02131 0.23 -1.0
2,285,939 - CCNA_02131 0.23 -0.5
2,285,939 - CCNA_02131 0.23 -0.1
2,285,944 - CCNA_02131 0.23 -0.3
2,285,944 - CCNA_02131 0.23 -0.6
2,286,095 + CCNA_02131 0.29 -1.3
2,286,126 + CCNA_02131 0.30 -2.2
2,286,154 + CCNA_02131 0.31 -0.3
2,286,205 + CCNA_02131 0.33 -1.1
2,286,205 + CCNA_02131 0.33 +0.7
2,286,213 - CCNA_02131 0.34 -0.2
2,286,286 + CCNA_02131 0.37 +1.0
2,286,286 + CCNA_02131 0.37 -0.7

Or see this region's nucleotide sequence