Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02116 and CCNA_02117 are separated by 114 nucleotides CCNA_02117 and CCNA_02118 are separated by 82 nucleotides
CCNA_02116: CCNA_02116 - hypothetical protein, at 2,265,728 to 2,266,525
_02116
CCNA_02117: CCNA_02117 - polyketide cyclase/lipid transport protein, at 2,266,640 to 2,267,236
_02117
CCNA_02118: CCNA_02118 - ATP-dependent helicase, dinG family, at 2,267,319 to 2,269,502
_02118
Position (kb)
2266
2267
2268 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2265.642 kb on + strand at 2265.716 kb on - strand at 2265.734 kb on + strand at 2265.753 kb on + strand at 2265.761 kb on - strand at 2265.789 kb on - strand at 2265.846 kb on - strand, within CCNA_02116 at 2265.867 kb on + strand, within CCNA_02116 at 2265.867 kb on + strand, within CCNA_02116 at 2265.875 kb on - strand, within CCNA_02116 at 2265.875 kb on - strand, within CCNA_02116 at 2265.920 kb on - strand, within CCNA_02116 at 2265.972 kb on - strand, within CCNA_02116 at 2265.977 kb on - strand, within CCNA_02116 at 2266.070 kb on + strand, within CCNA_02116 at 2266.078 kb on - strand, within CCNA_02116 at 2266.078 kb on - strand, within CCNA_02116 at 2266.079 kb on - strand, within CCNA_02116 at 2266.084 kb on - strand, within CCNA_02116 at 2266.143 kb on + strand, within CCNA_02116 at 2266.158 kb on + strand, within CCNA_02116 at 2266.161 kb on - strand, within CCNA_02116 at 2266.166 kb on - strand, within CCNA_02116 at 2266.212 kb on + strand, within CCNA_02116 at 2266.212 kb on + strand, within CCNA_02116 at 2266.220 kb on - strand, within CCNA_02116 at 2266.267 kb on - strand, within CCNA_02116 at 2266.363 kb on + strand, within CCNA_02116 at 2266.380 kb on + strand, within CCNA_02116 at 2266.380 kb on + strand, within CCNA_02116 at 2266.393 kb on - strand, within CCNA_02116 at 2266.414 kb on - strand, within CCNA_02116 at 2266.426 kb on - strand, within CCNA_02116 at 2266.441 kb on + strand, within CCNA_02116 at 2266.609 kb on + strand at 2266.672 kb on + strand at 2266.703 kb on + strand, within CCNA_02117 at 2266.722 kb on + strand, within CCNA_02117 at 2266.730 kb on - strand, within CCNA_02117 at 2266.746 kb on - strand, within CCNA_02117 at 2266.754 kb on - strand, within CCNA_02117 at 2266.810 kb on - strand, within CCNA_02117 at 2266.838 kb on - strand, within CCNA_02117 at 2266.839 kb on - strand, within CCNA_02117 at 2266.847 kb on + strand, within CCNA_02117 at 2266.862 kb on - strand, within CCNA_02117 at 2266.911 kb on + strand, within CCNA_02117 at 2266.926 kb on - strand, within CCNA_02117 at 2267.019 kb on + strand, within CCNA_02117 at 2267.098 kb on + strand, within CCNA_02117 at 2267.103 kb on + strand, within CCNA_02117 at 2267.108 kb on + strand, within CCNA_02117 at 2267.108 kb on + strand, within CCNA_02117 at 2267.109 kb on + strand, within CCNA_02117 at 2267.109 kb on + strand, within CCNA_02117 at 2267.111 kb on - strand, within CCNA_02117 at 2267.115 kb on + strand, within CCNA_02117 at 2267.115 kb on + strand, within CCNA_02117 at 2267.130 kb on + strand, within CCNA_02117 at 2267.130 kb on + strand, within CCNA_02117 at 2267.138 kb on - strand, within CCNA_02117 at 2267.138 kb on - strand, within CCNA_02117 at 2267.149 kb on + strand, within CCNA_02117 at 2267.149 kb on + strand, within CCNA_02117 at 2267.162 kb on + strand, within CCNA_02117 at 2267.165 kb on - strand, within CCNA_02117 at 2267.170 kb on - strand, within CCNA_02117 at 2267.231 kb on - strand at 2267.231 kb on - strand at 2267.238 kb on + strand at 2267.324 kb on - strand at 2267.405 kb on + strand at 2267.439 kb on - strand at 2267.490 kb on + strand at 2267.532 kb on - strand at 2267.560 kb on - strand, within CCNA_02118 at 2267.578 kb on - strand, within CCNA_02118 at 2267.658 kb on + strand, within CCNA_02118 at 2267.663 kb on + strand, within CCNA_02118 at 2267.666 kb on + strand, within CCNA_02118 at 2267.673 kb on - strand, within CCNA_02118 at 2267.674 kb on - strand, within CCNA_02118 at 2267.729 kb on + strand, within CCNA_02118 at 2267.748 kb on + strand, within CCNA_02118 at 2267.778 kb on + strand, within CCNA_02118 at 2267.778 kb on + strand, within CCNA_02118 at 2267.786 kb on - strand, within CCNA_02118 at 2267.788 kb on + strand, within CCNA_02118 at 2267.796 kb on - strand, within CCNA_02118 at 2267.796 kb on - strand, within CCNA_02118 at 2267.796 kb on - strand, within CCNA_02118 at 2267.806 kb on + strand, within CCNA_02118 at 2267.853 kb on + strand, within CCNA_02118 at 2267.884 kb on + strand, within CCNA_02118 at 2268.028 kb on + strand, within CCNA_02118 at 2268.038 kb on + strand, within CCNA_02118 at 2268.041 kb on - strand, within CCNA_02118 at 2268.067 kb on - strand, within CCNA_02118 at 2268.104 kb on + strand, within CCNA_02118 at 2268.104 kb on + strand, within CCNA_02118 at 2268.117 kb on - strand, within CCNA_02118 at 2268.208 kb on - strand, within CCNA_02118 at 2268.208 kb on - strand, within CCNA_02118
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,265,642 + +0.6 2,265,716 - -0.1 2,265,734 + +0.0 2,265,753 + -2.5 2,265,761 - -0.7 2,265,789 - -1.8 2,265,846 - CCNA_02116 0.15 +0.4 2,265,867 + CCNA_02116 0.17 -0.2 2,265,867 + CCNA_02116 0.17 -1.0 2,265,875 - CCNA_02116 0.18 -0.2 2,265,875 - CCNA_02116 0.18 -1.9 2,265,920 - CCNA_02116 0.24 -0.3 2,265,972 - CCNA_02116 0.31 -1.5 2,265,977 - CCNA_02116 0.31 -0.3 2,266,070 + CCNA_02116 0.43 +0.7 2,266,078 - CCNA_02116 0.44 -0.8 2,266,078 - CCNA_02116 0.44 -0.9 2,266,079 - CCNA_02116 0.44 +1.1 2,266,084 - CCNA_02116 0.45 -0.6 2,266,143 + CCNA_02116 0.52 -1.5 2,266,158 + CCNA_02116 0.54 +0.5 2,266,161 - CCNA_02116 0.54 -0.5 2,266,166 - CCNA_02116 0.55 -0.3 2,266,212 + CCNA_02116 0.61 -0.6 2,266,212 + CCNA_02116 0.61 +1.1 2,266,220 - CCNA_02116 0.62 -0.8 2,266,267 - CCNA_02116 0.68 -0.0 2,266,363 + CCNA_02116 0.80 +0.7 2,266,380 + CCNA_02116 0.82 -0.5 2,266,380 + CCNA_02116 0.82 -0.8 2,266,393 - CCNA_02116 0.83 -0.4 2,266,414 - CCNA_02116 0.86 -0.8 2,266,426 - CCNA_02116 0.87 +1.0 2,266,441 + CCNA_02116 0.89 -0.6 2,266,609 + +0.7 2,266,672 + -0.8 2,266,703 + CCNA_02117 0.11 +2.0 2,266,722 + CCNA_02117 0.14 -0.6 2,266,730 - CCNA_02117 0.15 -1.2 2,266,746 - CCNA_02117 0.18 +0.7 2,266,754 - CCNA_02117 0.19 -1.0 2,266,810 - CCNA_02117 0.28 -1.2 2,266,838 - CCNA_02117 0.33 -0.2 2,266,839 - CCNA_02117 0.33 +1.0 2,266,847 + CCNA_02117 0.35 -0.8 2,266,862 - CCNA_02117 0.37 -1.3 2,266,911 + CCNA_02117 0.45 -1.5 2,266,926 - CCNA_02117 0.48 +1.1 2,267,019 + CCNA_02117 0.63 -0.5 2,267,098 + CCNA_02117 0.77 -1.4 2,267,103 + CCNA_02117 0.78 -0.5 2,267,108 + CCNA_02117 0.78 -1.0 2,267,108 + CCNA_02117 0.78 -0.5 2,267,109 + CCNA_02117 0.79 -0.8 2,267,109 + CCNA_02117 0.79 -0.2 2,267,111 - CCNA_02117 0.79 -0.0 2,267,115 + CCNA_02117 0.80 -0.4 2,267,115 + CCNA_02117 0.80 -0.6 2,267,130 + CCNA_02117 0.82 +0.9 2,267,130 + CCNA_02117 0.82 -0.3 2,267,138 - CCNA_02117 0.83 -1.3 2,267,138 - CCNA_02117 0.83 -0.3 2,267,149 + CCNA_02117 0.85 -0.4 2,267,149 + CCNA_02117 0.85 -2.8 2,267,162 + CCNA_02117 0.87 -0.3 2,267,165 - CCNA_02117 0.88 -0.5 2,267,170 - CCNA_02117 0.89 +0.2 2,267,231 - -0.4 2,267,231 - -0.4 2,267,238 + -0.1 2,267,324 - +0.5 2,267,405 + -0.7 2,267,439 - +0.1 2,267,490 + -1.0 2,267,532 - +0.4 2,267,560 - CCNA_02118 0.11 -0.6 2,267,578 - CCNA_02118 0.12 -0.8 2,267,658 + CCNA_02118 0.16 -1.3 2,267,663 + CCNA_02118 0.16 -1.1 2,267,666 + CCNA_02118 0.16 -1.3 2,267,673 - CCNA_02118 0.16 +0.6 2,267,674 - CCNA_02118 0.16 -0.1 2,267,729 + CCNA_02118 0.19 -0.5 2,267,748 + CCNA_02118 0.20 -1.5 2,267,778 + CCNA_02118 0.21 -1.3 2,267,778 + CCNA_02118 0.21 +0.7 2,267,786 - CCNA_02118 0.21 +0.4 2,267,788 + CCNA_02118 0.21 -0.4 2,267,796 - CCNA_02118 0.22 -1.4 2,267,796 - CCNA_02118 0.22 -0.3 2,267,796 - CCNA_02118 0.22 +0.5 2,267,806 + CCNA_02118 0.22 -0.6 2,267,853 + CCNA_02118 0.24 +0.9 2,267,884 + CCNA_02118 0.26 -1.0 2,268,028 + CCNA_02118 0.32 +0.7 2,268,038 + CCNA_02118 0.33 -1.3 2,268,041 - CCNA_02118 0.33 -1.0 2,268,067 - CCNA_02118 0.34 +1.1 2,268,104 + CCNA_02118 0.36 -0.6 2,268,104 + CCNA_02118 0.36 +0.9 2,268,117 - CCNA_02118 0.37 +0.7 2,268,208 - CCNA_02118 0.41 +1.0 2,268,208 - CCNA_02118 0.41 -0.1
Or see this region's nucleotide sequence