Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02083 and CCNA_02084 overlap by 4 nucleotides CCNA_02084 and CCNA_02085 overlap by 4 nucleotides CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides
CCNA_02083: CCNA_02083 - chromosome segregation and condensation protein B scpB, at 2,232,870 to 2,233,535
_02083
CCNA_02084: CCNA_02084 - chromosome segregation and condensation protein fusion scpA, at 2,233,532 to 2,234,356
_02084
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
Position (kb)
2234
2235
2236 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2233.357 kb on + strand, within CCNA_02083 at 2233.365 kb on - strand, within CCNA_02083 at 2233.367 kb on + strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.480 kb on + strand at 2233.527 kb on - strand at 2233.585 kb on - strand at 2233.617 kb on + strand, within CCNA_02084 at 2233.653 kb on - strand, within CCNA_02084 at 2233.735 kb on + strand, within CCNA_02084 at 2233.740 kb on + strand, within CCNA_02084 at 2233.740 kb on + strand, within CCNA_02084 at 2233.786 kb on + strand, within CCNA_02084 at 2233.817 kb on - strand, within CCNA_02084 at 2233.830 kb on + strand, within CCNA_02084 at 2233.830 kb on + strand, within CCNA_02084 at 2233.838 kb on - strand, within CCNA_02084 at 2233.838 kb on - strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.840 kb on + strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.862 kb on - strand, within CCNA_02084 at 2233.876 kb on + strand, within CCNA_02084 at 2233.898 kb on + strand, within CCNA_02084 at 2233.898 kb on + strand, within CCNA_02084 at 2233.906 kb on - strand, within CCNA_02084 at 2233.909 kb on + strand, within CCNA_02084 at 2233.922 kb on - strand, within CCNA_02084 at 2233.994 kb on - strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.057 kb on - strand, within CCNA_02084 at 2234.064 kb on + strand, within CCNA_02084 at 2234.064 kb on + strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.077 kb on - strand, within CCNA_02084 at 2234.090 kb on + strand, within CCNA_02084 at 2234.169 kb on + strand, within CCNA_02084 at 2234.257 kb on + strand, within CCNA_02084 at 2234.260 kb on + strand, within CCNA_02084 at 2234.334 kb on - strand at 2234.395 kb on + strand at 2234.403 kb on - strand at 2234.437 kb on + strand at 2234.445 kb on - strand at 2234.445 kb on - strand at 2234.501 kb on + strand, within CCNA_02085 at 2234.503 kb on - strand, within CCNA_02085 at 2234.538 kb on - strand, within CCNA_02085 at 2234.563 kb on + strand, within CCNA_02085 at 2234.585 kb on - strand, within CCNA_02085 at 2234.610 kb on + strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.620 kb on + strand, within CCNA_02085 at 2234.630 kb on - strand, within CCNA_02085 at 2234.804 kb on - strand, within CCNA_02085 at 2234.809 kb on - strand, within CCNA_02085 at 2234.827 kb on + strand, within CCNA_02085 at 2234.858 kb on - strand, within CCNA_02085 at 2234.914 kb on + strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.939 kb on - strand, within CCNA_02085 at 2235.017 kb on - strand, within CCNA_02085 at 2235.056 kb on + strand, within CCNA_02085 at 2235.063 kb on + strand, within CCNA_02085 at 2235.225 kb on + strand, within CCNA_02085 at 2235.233 kb on - strand, within CCNA_02085 at 2235.279 kb on + strand, within CCNA_02085 at 2235.287 kb on + strand at 2235.292 kb on + strand at 2235.293 kb on - strand at 2235.295 kb on - strand at 2235.302 kb on - strand at 2235.349 kb on + strand at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.374 kb on + strand at 2236.227 kb on - strand at 2236.237 kb on + strand at 2236.252 kb on + strand at 2236.262 kb on + strand at 2236.265 kb on - strand at 2236.278 kb on + strand at 2236.286 kb on - strand at 2236.286 kb on - strand at 2236.295 kb on - strand at 2236.295 kb on - strand at 2236.310 kb on + strand at 2236.313 kb on + strand at 2236.318 kb on - strand at 2236.345 kb on + strand at 2236.348 kb on - strand at 2236.350 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,233,357 + CCNA_02083 0.73 +0.7 2,233,365 - CCNA_02083 0.74 +0.6 2,233,367 + CCNA_02083 0.75 -1.5 2,233,370 - CCNA_02083 0.75 -0.2 2,233,370 - CCNA_02083 0.75 +0.4 2,233,480 + -1.3 2,233,527 - +0.0 2,233,585 - +0.2 2,233,617 + CCNA_02084 0.10 -0.9 2,233,653 - CCNA_02084 0.15 +1.7 2,233,735 + CCNA_02084 0.25 -0.3 2,233,740 + CCNA_02084 0.25 -0.8 2,233,740 + CCNA_02084 0.25 -1.2 2,233,786 + CCNA_02084 0.31 -0.5 2,233,817 - CCNA_02084 0.35 +0.1 2,233,830 + CCNA_02084 0.36 -0.1 2,233,830 + CCNA_02084 0.36 -0.8 2,233,838 - CCNA_02084 0.37 +0.3 2,233,838 - CCNA_02084 0.37 +0.7 2,233,840 + CCNA_02084 0.37 +0.1 2,233,840 + CCNA_02084 0.37 +0.7 2,233,840 + CCNA_02084 0.37 -1.3 2,233,840 + CCNA_02084 0.37 +1.1 2,233,840 + CCNA_02084 0.37 -0.2 2,233,856 + CCNA_02084 0.39 -1.0 2,233,856 + CCNA_02084 0.39 +0.6 2,233,856 + CCNA_02084 0.39 -0.0 2,233,862 - CCNA_02084 0.40 -1.7 2,233,876 + CCNA_02084 0.42 -0.3 2,233,898 + CCNA_02084 0.44 -0.6 2,233,898 + CCNA_02084 0.44 -0.2 2,233,906 - CCNA_02084 0.45 -0.6 2,233,909 + CCNA_02084 0.46 +0.3 2,233,922 - CCNA_02084 0.47 +0.3 2,233,994 - CCNA_02084 0.56 +0.2 2,234,049 + CCNA_02084 0.63 -0.7 2,234,049 + CCNA_02084 0.63 -1.2 2,234,057 - CCNA_02084 0.64 -0.4 2,234,064 + CCNA_02084 0.64 -0.1 2,234,064 + CCNA_02084 0.64 -1.3 2,234,072 - CCNA_02084 0.65 +0.6 2,234,072 - CCNA_02084 0.65 +2.0 2,234,077 - CCNA_02084 0.66 +0.3 2,234,090 + CCNA_02084 0.68 -1.1 2,234,169 + CCNA_02084 0.77 +0.6 2,234,257 + CCNA_02084 0.88 +0.2 2,234,260 + CCNA_02084 0.88 +0.7 2,234,334 - +0.5 2,234,395 + -1.9 2,234,403 - -0.7 2,234,437 + -1.0 2,234,445 - +1.7 2,234,445 - -1.7 2,234,501 + CCNA_02085 0.14 -0.6 2,234,503 - CCNA_02085 0.14 +0.7 2,234,538 - CCNA_02085 0.18 -1.1 2,234,563 + CCNA_02085 0.20 -0.1 2,234,585 - CCNA_02085 0.22 +0.9 2,234,610 + CCNA_02085 0.25 -0.9 2,234,618 - CCNA_02085 0.26 -1.2 2,234,618 - CCNA_02085 0.26 +0.7 2,234,620 + CCNA_02085 0.26 +0.4 2,234,630 - CCNA_02085 0.27 +1.1 2,234,804 - CCNA_02085 0.43 -1.2 2,234,809 - CCNA_02085 0.44 -0.5 2,234,827 + CCNA_02085 0.46 +0.1 2,234,858 - CCNA_02085 0.49 +0.1 2,234,914 + CCNA_02085 0.54 -0.9 2,234,922 - CCNA_02085 0.55 -0.3 2,234,922 - CCNA_02085 0.55 +0.4 2,234,939 - CCNA_02085 0.56 -1.7 2,235,017 - CCNA_02085 0.64 +0.4 2,235,056 + CCNA_02085 0.68 +0.7 2,235,063 + CCNA_02085 0.68 -1.7 2,235,225 + CCNA_02085 0.84 -0.5 2,235,233 - CCNA_02085 0.85 -1.7 2,235,279 + CCNA_02085 0.89 +0.7 2,235,287 + +0.3 2,235,292 + +0.4 2,235,293 - +0.4 2,235,295 - -1.4 2,235,302 - -0.1 2,235,349 + -0.7 2,235,357 - -1.5 2,235,357 - -0.5 2,235,374 + -1.4 2,236,227 - +0.5 2,236,237 + -0.2 2,236,252 + +0.1 2,236,262 + +1.2 2,236,265 - -0.3 2,236,278 + -0.8 2,236,286 - +0.4 2,236,286 - +0.3 2,236,295 - +0.3 2,236,295 - -0.1 2,236,310 + -0.5 2,236,313 + -0.7 2,236,318 - +0.7 2,236,345 + -1.6 2,236,348 - +0.0 2,236,350 + -0.8 2,236,368 - -0.8 2,236,368 - +0.6 2,236,376 - +0.1
Or see this region's nucleotide sequence