Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02061 and CCNA_02062 are separated by 110 nucleotides CCNA_02062 and CCNA_02063 are separated by 82 nucleotides
CCNA_02061: CCNA_02061 - hypothetical protein, at 2,210,438 to 2,211,667
_02061
CCNA_02062: CCNA_02062 - DNA repair protein recN, at 2,211,778 to 2,213,484
_02062
CCNA_02063: CCNA_02063 - beta-barrel assembly machine (BAM) protein BamD, at 2,213,567 to 2,214,496
_02063
Position (kb)
2211
2212
2213
2214 Strain fitness (log2 ratio)
-2
-1
0
1 at 2210.778 kb on - strand, within CCNA_02061 at 2210.837 kb on - strand, within CCNA_02061 at 2210.839 kb on + strand, within CCNA_02061 at 2210.839 kb on + strand, within CCNA_02061 at 2210.839 kb on + strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.847 kb on - strand, within CCNA_02061 at 2210.862 kb on - strand, within CCNA_02061 at 2211.068 kb on - strand, within CCNA_02061 at 2211.086 kb on + strand, within CCNA_02061 at 2211.111 kb on - strand, within CCNA_02061 at 2211.111 kb on - strand, within CCNA_02061 at 2211.146 kb on + strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.154 kb on - strand, within CCNA_02061 at 2211.198 kb on - strand, within CCNA_02061 at 2211.200 kb on + strand, within CCNA_02061 at 2211.264 kb on - strand, within CCNA_02061 at 2211.316 kb on + strand, within CCNA_02061 at 2211.324 kb on - strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.471 kb on + strand, within CCNA_02061 at 2211.491 kb on + strand, within CCNA_02061 at 2211.573 kb on - strand at 2211.575 kb on + strand at 2211.608 kb on + strand at 2211.616 kb on - strand at 2211.625 kb on + strand at 2211.633 kb on - strand at 2211.663 kb on - strand at 2211.663 kb on - strand at 2211.670 kb on - strand at 2211.672 kb on - strand at 2211.878 kb on + strand at 2211.886 kb on - strand at 2212.054 kb on + strand, within CCNA_02062 at 2212.175 kb on + strand, within CCNA_02062 at 2212.241 kb on + strand, within CCNA_02062 at 2212.322 kb on + strand, within CCNA_02062 at 2212.327 kb on + strand, within CCNA_02062 at 2212.330 kb on - strand, within CCNA_02062 at 2212.449 kb on - strand, within CCNA_02062 at 2212.571 kb on + strand, within CCNA_02062 at 2212.669 kb on - strand, within CCNA_02062 at 2212.692 kb on - strand, within CCNA_02062 at 2212.829 kb on - strand, within CCNA_02062 at 2212.878 kb on + strand, within CCNA_02062 at 2212.886 kb on - strand, within CCNA_02062 at 2212.886 kb on - strand, within CCNA_02062 at 2213.054 kb on + strand, within CCNA_02062 at 2213.054 kb on + strand, within CCNA_02062 at 2213.062 kb on - strand, within CCNA_02062 at 2213.128 kb on - strand, within CCNA_02062 at 2213.130 kb on + strand, within CCNA_02062 at 2213.580 kb on + strand at 2213.586 kb on + strand at 2213.594 kb on - strand at 2213.608 kb on - strand at 2213.634 kb on + strand at 2213.682 kb on + strand, within CCNA_02063 at 2213.710 kb on + strand, within CCNA_02063
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,210,778 - CCNA_02061 0.28 -0.3 2,210,837 - CCNA_02061 0.32 -0.5 2,210,839 + CCNA_02061 0.33 +0.4 2,210,839 + CCNA_02061 0.33 +0.4 2,210,839 + CCNA_02061 0.33 +0.3 2,210,847 - CCNA_02061 0.33 -0.0 2,210,847 - CCNA_02061 0.33 +1.3 2,210,847 - CCNA_02061 0.33 +0.3 2,210,862 - CCNA_02061 0.34 -0.1 2,211,068 - CCNA_02061 0.51 -0.3 2,211,086 + CCNA_02061 0.53 +1.1 2,211,111 - CCNA_02061 0.55 +0.1 2,211,111 - CCNA_02061 0.55 -0.4 2,211,146 + CCNA_02061 0.58 +0.0 2,211,154 - CCNA_02061 0.58 -0.7 2,211,154 - CCNA_02061 0.58 +0.3 2,211,154 - CCNA_02061 0.58 +0.2 2,211,198 - CCNA_02061 0.62 -1.0 2,211,200 + CCNA_02061 0.62 -1.1 2,211,264 - CCNA_02061 0.67 -0.4 2,211,316 + CCNA_02061 0.71 -0.2 2,211,324 - CCNA_02061 0.72 -0.1 2,211,471 + CCNA_02061 0.84 +0.9 2,211,471 + CCNA_02061 0.84 -0.4 2,211,471 + CCNA_02061 0.84 +0.3 2,211,491 + CCNA_02061 0.86 +0.4 2,211,573 - -0.8 2,211,575 + -0.0 2,211,608 + +0.4 2,211,616 - -0.7 2,211,625 + +0.1 2,211,633 - +0.2 2,211,663 - +0.0 2,211,663 - +0.8 2,211,670 - -0.1 2,211,672 - -0.4 2,211,878 + +0.4 2,211,886 - +0.4 2,212,054 + CCNA_02062 0.16 -2.1 2,212,175 + CCNA_02062 0.23 +0.9 2,212,241 + CCNA_02062 0.27 +0.1 2,212,322 + CCNA_02062 0.32 +1.0 2,212,327 + CCNA_02062 0.32 +0.8 2,212,330 - CCNA_02062 0.32 -1.1 2,212,449 - CCNA_02062 0.39 -0.5 2,212,571 + CCNA_02062 0.46 +0.7 2,212,669 - CCNA_02062 0.52 -0.6 2,212,692 - CCNA_02062 0.54 -1.9 2,212,829 - CCNA_02062 0.62 +0.4 2,212,878 + CCNA_02062 0.64 -0.4 2,212,886 - CCNA_02062 0.65 +0.4 2,212,886 - CCNA_02062 0.65 -0.6 2,213,054 + CCNA_02062 0.75 -0.1 2,213,054 + CCNA_02062 0.75 -0.1 2,213,062 - CCNA_02062 0.75 -1.2 2,213,128 - CCNA_02062 0.79 +0.1 2,213,130 + CCNA_02062 0.79 +0.7 2,213,580 + -0.4 2,213,586 + +0.1 2,213,594 - +0.4 2,213,608 - -0.7 2,213,634 + -1.4 2,213,682 + CCNA_02063 0.12 +0.1 2,213,710 + CCNA_02063 0.15 +0.3
Or see this region's nucleotide sequence