Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01986 and CCNA_01987 overlap by 4 nucleotides CCNA_01987 and CCNA_01988 are separated by 9 nucleotides CCNA_01988 and CCNA_01989 overlap by 4 nucleotides CCNA_01989 and CCNA_01990 are separated by 2 nucleotides
CCNA_01986: CCNA_01986 - lipid-A-disaccharide synthase, at 2,132,287 to 2,133,483
_01986
CCNA_01987: CCNA_01987 - UDP-2,3-diacylglucosamine pyrophosphatase LpxI, at 2,133,480 to 2,134,322
_01987
CCNA_01988: CCNA_01988 - UDP-N-acetylglucosamine O-acyltransferase LpxA, at 2,134,332 to 2,135,123
_01988
CCNA_01989: CCNA_01989 - (3R)-hydroxymyristoyl-ACP dehydratase FabZ, at 2,135,120 to 2,135,599
_01989
CCNA_01990: CCNA_01990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, at 2,135,602 to 2,136,621
_01990
Position (kb)
2134
2135
2136 Strain fitness (log2 ratio)
-1
0
1 at 2134.320 kb on - strand at 2134.329 kb on + strand at 2134.560 kb on - strand, within CCNA_01988 at 2134.608 kb on - strand, within CCNA_01988 at 2134.648 kb on + strand, within CCNA_01988 at 2134.804 kb on - strand, within CCNA_01988 at 2134.819 kb on + strand, within CCNA_01988 at 2135.017 kb on + strand, within CCNA_01988 at 2135.134 kb on - strand at 2135.804 kb on - strand, within CCNA_01990 at 2135.885 kb on + strand, within CCNA_01990
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,134,320 - +0.5 2,134,329 + +1.5 2,134,560 - CCNA_01988 0.29 +0.8 2,134,608 - CCNA_01988 0.35 -0.5 2,134,648 + CCNA_01988 0.40 +0.2 2,134,804 - CCNA_01988 0.60 +0.5 2,134,819 + CCNA_01988 0.61 -0.2 2,135,017 + CCNA_01988 0.86 -0.8 2,135,134 - +0.5 2,135,804 - CCNA_01990 0.20 +0.5 2,135,885 + CCNA_01990 0.28 -0.5
Or see this region's nucleotide sequence