Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01975 and CCNA_01976 overlap by 4 nucleotides CCNA_01976 and CCNA_01977 are separated by 95 nucleotides CCNA_01977 and CCNA_01978 are separated by 50 nucleotides
CCNA_01975: CCNA_01975 - anthranilate phosphoribosyltransferase, at 2,119,875 to 2,120,900
_01975
CCNA_01976: CCNA_01976 - Indole-3-glycerol phosphate synthase, at 2,120,897 to 2,121,685
_01976
CCNA_01977: CCNA_01977 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,121,781 to 2,122,371
_01977
CCNA_01978: CCNA_01978 - methyltransferase, at 2,122,422 to 2,123,273
_01978
Position (kb)
2120
2121
2122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2119.917 kb on + strand at 2119.925 kb on - strand at 2120.093 kb on + strand, within CCNA_01975 at 2120.095 kb on + strand, within CCNA_01975 at 2120.141 kb on - strand, within CCNA_01975 at 2120.156 kb on - strand, within CCNA_01975 at 2120.187 kb on + strand, within CCNA_01975 at 2120.247 kb on + strand, within CCNA_01975 at 2120.309 kb on - strand, within CCNA_01975 at 2120.400 kb on + strand, within CCNA_01975 at 2120.400 kb on + strand, within CCNA_01975 at 2120.409 kb on - strand, within CCNA_01975 at 2120.410 kb on - strand, within CCNA_01975 at 2120.496 kb on + strand, within CCNA_01975 at 2120.503 kb on - strand, within CCNA_01975 at 2120.539 kb on + strand, within CCNA_01975 at 2120.540 kb on - strand, within CCNA_01975 at 2120.544 kb on + strand, within CCNA_01975 at 2120.637 kb on + strand, within CCNA_01975 at 2120.642 kb on + strand, within CCNA_01975 at 2120.661 kb on + strand, within CCNA_01975 at 2120.705 kb on - strand, within CCNA_01975 at 2120.758 kb on - strand, within CCNA_01975 at 2120.787 kb on + strand, within CCNA_01975 at 2120.794 kb on - strand, within CCNA_01975 at 2120.834 kb on - strand at 2120.989 kb on + strand, within CCNA_01976 at 2121.027 kb on + strand, within CCNA_01976 at 2121.049 kb on + strand, within CCNA_01976 at 2121.062 kb on - strand, within CCNA_01976 at 2121.165 kb on + strand, within CCNA_01976 at 2121.171 kb on - strand, within CCNA_01976 at 2121.295 kb on - strand, within CCNA_01976 at 2121.320 kb on - strand, within CCNA_01976 at 2121.367 kb on - strand, within CCNA_01976 at 2121.407 kb on + strand, within CCNA_01976 at 2121.426 kb on - strand, within CCNA_01976 at 2121.452 kb on + strand, within CCNA_01976 at 2121.479 kb on + strand, within CCNA_01976 at 2121.585 kb on - strand, within CCNA_01976 at 2121.641 kb on - strand at 2121.745 kb on - strand at 2121.786 kb on - strand at 2121.791 kb on - strand at 2121.804 kb on + strand at 2121.837 kb on + strand at 2121.895 kb on + strand, within CCNA_01977 at 2121.903 kb on - strand, within CCNA_01977 at 2121.915 kb on - strand, within CCNA_01977 at 2121.950 kb on + strand, within CCNA_01977 at 2122.054 kb on - strand, within CCNA_01977 at 2122.065 kb on + strand, within CCNA_01977 at 2122.239 kb on - strand, within CCNA_01977 at 2122.260 kb on + strand, within CCNA_01977 at 2122.260 kb on + strand, within CCNA_01977 at 2122.353 kb on - strand at 2122.360 kb on - strand at 2122.376 kb on + strand at 2122.379 kb on - strand at 2122.386 kb on + strand at 2122.394 kb on - strand at 2122.410 kb on - strand at 2122.449 kb on - strand at 2122.518 kb on - strand, within CCNA_01978 at 2122.522 kb on + strand, within CCNA_01978 at 2122.522 kb on + strand, within CCNA_01978 at 2122.543 kb on - strand, within CCNA_01978 at 2122.630 kb on - strand, within CCNA_01978 at 2122.630 kb on - strand, within CCNA_01978 at 2122.630 kb on - strand, within CCNA_01978
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,119,917 + +0.1 2,119,925 - -1.7 2,120,093 + CCNA_01975 0.21 +0.5 2,120,095 + CCNA_01975 0.21 +0.2 2,120,141 - CCNA_01975 0.26 -0.5 2,120,156 - CCNA_01975 0.27 -0.0 2,120,187 + CCNA_01975 0.30 -0.0 2,120,247 + CCNA_01975 0.36 +0.1 2,120,309 - CCNA_01975 0.42 -0.8 2,120,400 + CCNA_01975 0.51 +0.5 2,120,400 + CCNA_01975 0.51 +0.1 2,120,409 - CCNA_01975 0.52 +1.8 2,120,410 - CCNA_01975 0.52 -0.2 2,120,496 + CCNA_01975 0.61 +0.4 2,120,503 - CCNA_01975 0.61 -3.3 2,120,539 + CCNA_01975 0.65 +0.4 2,120,540 - CCNA_01975 0.65 +1.0 2,120,544 + CCNA_01975 0.65 +1.0 2,120,637 + CCNA_01975 0.74 -0.1 2,120,642 + CCNA_01975 0.75 -0.3 2,120,661 + CCNA_01975 0.77 +0.7 2,120,705 - CCNA_01975 0.81 -0.4 2,120,758 - CCNA_01975 0.86 +0.8 2,120,787 + CCNA_01975 0.89 +0.2 2,120,794 - CCNA_01975 0.90 -0.9 2,120,834 - +0.5 2,120,989 + CCNA_01976 0.12 +0.8 2,121,027 + CCNA_01976 0.16 +0.1 2,121,049 + CCNA_01976 0.19 -0.4 2,121,062 - CCNA_01976 0.21 -1.1 2,121,165 + CCNA_01976 0.34 +0.6 2,121,171 - CCNA_01976 0.35 +0.9 2,121,295 - CCNA_01976 0.50 +1.5 2,121,320 - CCNA_01976 0.54 +0.4 2,121,367 - CCNA_01976 0.60 -0.1 2,121,407 + CCNA_01976 0.65 +0.2 2,121,426 - CCNA_01976 0.67 -0.6 2,121,452 + CCNA_01976 0.70 +0.4 2,121,479 + CCNA_01976 0.74 +0.1 2,121,585 - CCNA_01976 0.87 -0.3 2,121,641 - +0.6 2,121,745 - +0.2 2,121,786 - -0.8 2,121,791 - -0.9 2,121,804 + +0.1 2,121,837 + +1.3 2,121,895 + CCNA_01977 0.19 -0.1 2,121,903 - CCNA_01977 0.21 -0.6 2,121,915 - CCNA_01977 0.23 -0.8 2,121,950 + CCNA_01977 0.29 +0.1 2,122,054 - CCNA_01977 0.46 +1.1 2,122,065 + CCNA_01977 0.48 +0.3 2,122,239 - CCNA_01977 0.77 -0.2 2,122,260 + CCNA_01977 0.81 -0.0 2,122,260 + CCNA_01977 0.81 -0.5 2,122,353 - +0.7 2,122,360 - -1.5 2,122,376 + +0.5 2,122,379 - -0.5 2,122,386 + -0.4 2,122,394 - -0.9 2,122,410 - -0.8 2,122,449 - -0.4 2,122,518 - CCNA_01978 0.11 -0.3 2,122,522 + CCNA_01978 0.12 -1.1 2,122,522 + CCNA_01978 0.12 -0.2 2,122,543 - CCNA_01978 0.14 -0.6 2,122,630 - CCNA_01978 0.24 -1.0 2,122,630 - CCNA_01978 0.24 +0.6 2,122,630 - CCNA_01978 0.24 +0.3
Or see this region's nucleotide sequence