Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01972 and CCNA_01973 are separated by 22 nucleotides CCNA_01973 and CCNA_01974 are separated by 115 nucleotides CCNA_01974 and CCNA_01975 are separated by 8 nucleotides
CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922
_01972
CCNA_01973: CCNA_01973 - hypothetical protein, at 2,118,945 to 2,119,154
_01973
CCNA_01974: CCNA_01974 - anthranilate synthase component II/para-aminobenzoate synthase glutamine amidotransferase component II, at 2,119,270 to 2,119,866
_01974
CCNA_01975: CCNA_01975 - anthranilate phosphoribosyltransferase, at 2,119,875 to 2,120,900
_01975
Position (kb)
2118
2119
2120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2117.976 kb on - strand, within CCNA_01972 at 2117.987 kb on + strand, within CCNA_01972 at 2117.987 kb on + strand, within CCNA_01972 at 2118.006 kb on + strand, within CCNA_01972 at 2118.098 kb on + strand, within CCNA_01972 at 2118.105 kb on - strand, within CCNA_01972 at 2118.120 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.163 kb on - strand, within CCNA_01972 at 2118.189 kb on - strand, within CCNA_01972 at 2118.240 kb on + strand, within CCNA_01972 at 2118.248 kb on - strand, within CCNA_01972 at 2118.255 kb on + strand, within CCNA_01972 at 2118.389 kb on - strand, within CCNA_01972 at 2118.416 kb on + strand, within CCNA_01972 at 2118.501 kb on + strand, within CCNA_01972 at 2118.518 kb on + strand, within CCNA_01972 at 2118.534 kb on - strand, within CCNA_01972 at 2118.651 kb on + strand, within CCNA_01972 at 2118.685 kb on + strand, within CCNA_01972 at 2118.722 kb on - strand, within CCNA_01972 at 2118.752 kb on + strand, within CCNA_01972 at 2118.757 kb on + strand, within CCNA_01972 at 2118.767 kb on + strand, within CCNA_01972 at 2118.769 kb on + strand at 2118.770 kb on - strand at 2118.784 kb on + strand at 2118.811 kb on + strand at 2118.856 kb on + strand at 2118.866 kb on + strand at 2118.902 kb on - strand at 2118.904 kb on + strand at 2118.983 kb on - strand, within CCNA_01973 at 2118.984 kb on - strand, within CCNA_01973 at 2119.002 kb on + strand, within CCNA_01973 at 2119.020 kb on + strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.107 kb on + strand, within CCNA_01973 at 2119.128 kb on + strand, within CCNA_01973 at 2119.128 kb on + strand, within CCNA_01973 at 2119.172 kb on - strand at 2119.183 kb on + strand at 2119.248 kb on - strand at 2119.288 kb on + strand at 2119.296 kb on - strand at 2119.296 kb on - strand at 2119.366 kb on + strand, within CCNA_01974 at 2119.432 kb on - strand, within CCNA_01974 at 2119.432 kb on - strand, within CCNA_01974 at 2119.464 kb on + strand, within CCNA_01974 at 2119.464 kb on + strand, within CCNA_01974 at 2119.470 kb on - strand, within CCNA_01974 at 2119.472 kb on - strand, within CCNA_01974 at 2119.505 kb on + strand, within CCNA_01974 at 2119.526 kb on + strand, within CCNA_01974 at 2119.530 kb on + strand, within CCNA_01974 at 2119.572 kb on - strand, within CCNA_01974 at 2119.611 kb on + strand, within CCNA_01974 at 2119.618 kb on + strand, within CCNA_01974 at 2119.619 kb on - strand, within CCNA_01974 at 2119.632 kb on + strand, within CCNA_01974 at 2119.661 kb on - strand, within CCNA_01974 at 2119.678 kb on - strand, within CCNA_01974 at 2119.688 kb on + strand, within CCNA_01974 at 2119.696 kb on - strand, within CCNA_01974 at 2119.722 kb on + strand, within CCNA_01974 at 2119.737 kb on + strand, within CCNA_01974 at 2119.767 kb on + strand, within CCNA_01974 at 2119.825 kb on + strand at 2119.868 kb on - strand at 2119.868 kb on - strand at 2119.886 kb on + strand at 2119.917 kb on + strand at 2119.925 kb on - strand at 2120.093 kb on + strand, within CCNA_01975 at 2120.095 kb on + strand, within CCNA_01975 at 2120.141 kb on - strand, within CCNA_01975
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,117,976 - CCNA_01972 0.39 +1.1 2,117,987 + CCNA_01972 0.39 +0.5 2,117,987 + CCNA_01972 0.39 +0.0 2,118,006 + CCNA_01972 0.41 -0.2 2,118,098 + CCNA_01972 0.46 +1.7 2,118,105 - CCNA_01972 0.47 -0.2 2,118,120 + CCNA_01972 0.48 +0.5 2,118,155 + CCNA_01972 0.50 +1.7 2,118,155 + CCNA_01972 0.50 +0.3 2,118,163 - CCNA_01972 0.51 +0.7 2,118,189 - CCNA_01972 0.52 -0.4 2,118,240 + CCNA_01972 0.56 +0.5 2,118,248 - CCNA_01972 0.56 -0.9 2,118,255 + CCNA_01972 0.57 +0.3 2,118,389 - CCNA_01972 0.65 +0.8 2,118,416 + CCNA_01972 0.67 -0.3 2,118,501 + CCNA_01972 0.73 +0.4 2,118,518 + CCNA_01972 0.74 -0.3 2,118,534 - CCNA_01972 0.75 -3.0 2,118,651 + CCNA_01972 0.82 -0.0 2,118,685 + CCNA_01972 0.85 +0.7 2,118,722 - CCNA_01972 0.87 +0.5 2,118,752 + CCNA_01972 0.89 -0.4 2,118,757 + CCNA_01972 0.89 -0.4 2,118,767 + CCNA_01972 0.90 +0.2 2,118,769 + +1.2 2,118,770 - -1.8 2,118,784 + +0.4 2,118,811 + +0.0 2,118,856 + +0.2 2,118,866 + +0.5 2,118,902 - -0.0 2,118,904 + -0.1 2,118,983 - CCNA_01973 0.18 +0.3 2,118,984 - CCNA_01973 0.19 +0.1 2,119,002 + CCNA_01973 0.27 +0.2 2,119,020 + CCNA_01973 0.36 -0.0 2,119,093 - CCNA_01973 0.70 -0.4 2,119,093 - CCNA_01973 0.70 +1.5 2,119,093 - CCNA_01973 0.70 +0.0 2,119,107 + CCNA_01973 0.77 +0.0 2,119,128 + CCNA_01973 0.87 +0.3 2,119,128 + CCNA_01973 0.87 -1.5 2,119,172 - -1.3 2,119,183 + -1.5 2,119,248 - -0.6 2,119,288 + +0.5 2,119,296 - +1.0 2,119,296 - +0.7 2,119,366 + CCNA_01974 0.16 +0.2 2,119,432 - CCNA_01974 0.27 +0.9 2,119,432 - CCNA_01974 0.27 -0.5 2,119,464 + CCNA_01974 0.32 -0.1 2,119,464 + CCNA_01974 0.32 +0.5 2,119,470 - CCNA_01974 0.34 +0.1 2,119,472 - CCNA_01974 0.34 -1.9 2,119,505 + CCNA_01974 0.39 -0.4 2,119,526 + CCNA_01974 0.43 +0.1 2,119,530 + CCNA_01974 0.44 +0.4 2,119,572 - CCNA_01974 0.51 -0.7 2,119,611 + CCNA_01974 0.57 +0.6 2,119,618 + CCNA_01974 0.58 +0.0 2,119,619 - CCNA_01974 0.58 -0.7 2,119,632 + CCNA_01974 0.61 +1.4 2,119,661 - CCNA_01974 0.65 -2.2 2,119,678 - CCNA_01974 0.68 -1.3 2,119,688 + CCNA_01974 0.70 +0.1 2,119,696 - CCNA_01974 0.71 +0.3 2,119,722 + CCNA_01974 0.76 +0.3 2,119,737 + CCNA_01974 0.78 +0.2 2,119,767 + CCNA_01974 0.83 +2.1 2,119,825 + -0.9 2,119,868 - -0.4 2,119,868 - +1.0 2,119,886 + +0.3 2,119,917 + +0.1 2,119,925 - -1.7 2,120,093 + CCNA_01975 0.21 +0.5 2,120,095 + CCNA_01975 0.21 +0.2 2,120,141 - CCNA_01975 0.26 -0.5
Or see this region's nucleotide sequence