Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01966 and CCNA_01967 are separated by 71 nucleotides CCNA_01967 and CCNA_01968 are separated by 94 nucleotides CCNA_01968 and CCNA_01969 are separated by 77 nucleotides
CCNA_01966: CCNA_01966 - vitamin B12-dependent ribonucleotide reductase, at 2,108,222 to 2,110,945
_01966
CCNA_01967: CCNA_01967 - hypothetical protein with pentapeptide repeats, at 2,111,017 to 2,111,514
_01967
CCNA_01968: CCNA_01968 - pentapeptide repeats containing protein, at 2,111,609 to 2,112,478
_01968
CCNA_01969: CCNA_01969 - aspartyl-tRNA synthetase, at 2,112,556 to 2,114,394
_01969
Position (kb)
2111
2112
2113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2110.618 kb on + strand, within CCNA_01966 at 2110.640 kb on - strand, within CCNA_01966 at 2110.642 kb on + strand, within CCNA_01966 at 2110.650 kb on - strand, within CCNA_01966 at 2110.650 kb on - strand, within CCNA_01966 at 2110.650 kb on - strand, within CCNA_01966 at 2110.650 kb on - strand, within CCNA_01966 at 2110.667 kb on + strand, within CCNA_01966 at 2110.763 kb on - strand at 2110.921 kb on + strand at 2110.934 kb on + strand at 2110.940 kb on + strand at 2110.959 kb on + strand at 2110.979 kb on + strand at 2110.979 kb on + strand at 2110.987 kb on - strand at 2111.042 kb on - strand at 2111.047 kb on - strand at 2111.056 kb on + strand at 2111.108 kb on - strand, within CCNA_01967 at 2111.108 kb on - strand, within CCNA_01967 at 2111.127 kb on - strand, within CCNA_01967 at 2111.145 kb on + strand, within CCNA_01967 at 2111.153 kb on - strand, within CCNA_01967 at 2111.153 kb on - strand, within CCNA_01967 at 2111.153 kb on - strand, within CCNA_01967 at 2111.245 kb on + strand, within CCNA_01967 at 2111.253 kb on - strand, within CCNA_01967 at 2111.271 kb on + strand, within CCNA_01967 at 2111.298 kb on - strand, within CCNA_01967 at 2111.316 kb on + strand, within CCNA_01967 at 2111.325 kb on + strand, within CCNA_01967 at 2111.348 kb on - strand, within CCNA_01967 at 2111.375 kb on + strand, within CCNA_01967 at 2111.375 kb on + strand, within CCNA_01967 at 2111.375 kb on + strand, within CCNA_01967 at 2111.410 kb on + strand, within CCNA_01967 at 2111.475 kb on - strand at 2111.476 kb on + strand at 2111.544 kb on + strand at 2111.567 kb on + strand at 2111.567 kb on + strand at 2111.600 kb on + strand at 2111.626 kb on + strand at 2111.886 kb on + strand, within CCNA_01968 at 2111.948 kb on + strand, within CCNA_01968 at 2112.436 kb on + strand at 2112.477 kb on - strand at 2112.542 kb on + strand at 2112.550 kb on - strand at 2112.550 kb on - strand at 2112.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,110,618 + CCNA_01966 0.88 +0.4 2,110,640 - CCNA_01966 0.89 +1.1 2,110,642 + CCNA_01966 0.89 +1.5 2,110,650 - CCNA_01966 0.89 +0.3 2,110,650 - CCNA_01966 0.89 -1.6 2,110,650 - CCNA_01966 0.89 -2.0 2,110,650 - CCNA_01966 0.89 +0.1 2,110,667 + CCNA_01966 0.90 -0.6 2,110,763 - +0.2 2,110,921 + +1.1 2,110,934 + -1.9 2,110,940 + +0.8 2,110,959 + +1.5 2,110,979 + +0.5 2,110,979 + +0.0 2,110,987 - -1.4 2,111,042 - -2.2 2,111,047 - -0.6 2,111,056 + +0.8 2,111,108 - CCNA_01967 0.18 +0.2 2,111,108 - CCNA_01967 0.18 -2.1 2,111,127 - CCNA_01967 0.22 -0.4 2,111,145 + CCNA_01967 0.26 +0.1 2,111,153 - CCNA_01967 0.27 -1.0 2,111,153 - CCNA_01967 0.27 -0.8 2,111,153 - CCNA_01967 0.27 -0.7 2,111,245 + CCNA_01967 0.46 +0.9 2,111,253 - CCNA_01967 0.47 -0.4 2,111,271 + CCNA_01967 0.51 +0.2 2,111,298 - CCNA_01967 0.56 +0.4 2,111,316 + CCNA_01967 0.60 +0.2 2,111,325 + CCNA_01967 0.62 +0.8 2,111,348 - CCNA_01967 0.66 +0.0 2,111,375 + CCNA_01967 0.72 +1.0 2,111,375 + CCNA_01967 0.72 +0.3 2,111,375 + CCNA_01967 0.72 +0.3 2,111,410 + CCNA_01967 0.79 +0.1 2,111,475 - -0.8 2,111,476 + -0.5 2,111,544 + +0.1 2,111,567 + +2.3 2,111,567 + +0.6 2,111,600 + -0.3 2,111,626 + +0.4 2,111,886 + CCNA_01968 0.32 -0.4 2,111,948 + CCNA_01968 0.39 -1.0 2,112,436 + +1.1 2,112,477 - -0.3 2,112,542 + +2.6 2,112,550 - +0.6 2,112,550 - +0.8 2,112,586 - +1.1
Or see this region's nucleotide sequence