Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01926 and CCNA_01927 are separated by 136 nucleotides CCNA_01927 and CCNA_01928 overlap by 14 nucleotides CCNA_01928 and CCNA_01929 overlap by 4 nucleotides CCNA_01929 and CCNA_01930 are separated by 0 nucleotides
CCNA_01926: CCNA_01926 - GGDEF diguanylate cyclase DgcB, at 2,072,620 to 2,073,681
_01926
CCNA_01927: CCNA_01927 - enoyl-CoA hydratase, at 2,073,818 to 2,074,621
_01927
CCNA_01928: CCNA_01928 - conserved ACT domain protein, at 2,074,608 to 2,075,018
_01928
CCNA_01929: CCNA_01929 - hypothetical protein, at 2,075,015 to 2,075,419
_01929
CCNA_01930: CCNA_01930 - ADP-heptose LPS heptosyltransferase, at 2,075,420 to 2,076,391
_01930
Position (kb)
2073
2074
2075 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2072.861 kb on + strand, within CCNA_01926 at 2072.882 kb on - strand, within CCNA_01926 at 2072.906 kb on - strand, within CCNA_01926 at 2072.954 kb on - strand, within CCNA_01926 at 2073.000 kb on - strand, within CCNA_01926 at 2073.182 kb on - strand, within CCNA_01926 at 2073.204 kb on - strand, within CCNA_01926 at 2073.227 kb on - strand, within CCNA_01926 at 2073.257 kb on + strand, within CCNA_01926 at 2073.265 kb on - strand, within CCNA_01926 at 2073.275 kb on - strand, within CCNA_01926 at 2073.282 kb on + strand, within CCNA_01926 at 2073.290 kb on - strand, within CCNA_01926 at 2073.357 kb on - strand, within CCNA_01926 at 2073.357 kb on - strand, within CCNA_01926 at 2073.357 kb on - strand, within CCNA_01926 at 2073.403 kb on - strand, within CCNA_01926 at 2073.441 kb on + strand, within CCNA_01926 at 2073.496 kb on - strand, within CCNA_01926 at 2073.542 kb on - strand, within CCNA_01926 at 2073.651 kb on + strand at 2073.659 kb on - strand at 2073.699 kb on - strand at 2073.699 kb on - strand at 2073.777 kb on - strand at 2073.779 kb on + strand at 2073.811 kb on - strand at 2073.823 kb on - strand at 2073.845 kb on + strand at 2073.850 kb on + strand at 2073.871 kb on - strand at 2073.903 kb on + strand, within CCNA_01927 at 2073.911 kb on - strand, within CCNA_01927 at 2073.933 kb on - strand, within CCNA_01927 at 2073.934 kb on - strand, within CCNA_01927 at 2073.956 kb on - strand, within CCNA_01927 at 2073.972 kb on + strand, within CCNA_01927 at 2073.980 kb on - strand, within CCNA_01927 at 2073.980 kb on - strand, within CCNA_01927 at 2073.984 kb on - strand, within CCNA_01927 at 2074.148 kb on + strand, within CCNA_01927 at 2074.148 kb on + strand, within CCNA_01927 at 2074.148 kb on + strand, within CCNA_01927 at 2074.177 kb on - strand, within CCNA_01927 at 2074.232 kb on - strand, within CCNA_01927 at 2074.256 kb on - strand, within CCNA_01927 at 2074.257 kb on - strand, within CCNA_01927 at 2074.279 kb on - strand, within CCNA_01927 at 2074.436 kb on - strand, within CCNA_01927 at 2074.446 kb on - strand, within CCNA_01927 at 2074.446 kb on - strand, within CCNA_01927 at 2074.485 kb on - strand, within CCNA_01927 at 2074.485 kb on - strand, within CCNA_01927 at 2074.485 kb on - strand, within CCNA_01927 at 2074.486 kb on - strand, within CCNA_01927 at 2074.496 kb on - strand, within CCNA_01927 at 2074.513 kb on + strand, within CCNA_01927 at 2074.532 kb on + strand, within CCNA_01927 at 2074.586 kb on + strand at 2074.594 kb on - strand at 2074.604 kb on + strand at 2074.606 kb on + strand at 2074.614 kb on - strand at 2074.614 kb on - strand at 2074.632 kb on - strand at 2074.637 kb on + strand at 2074.679 kb on - strand, within CCNA_01928 at 2074.688 kb on - strand, within CCNA_01928 at 2074.698 kb on + strand, within CCNA_01928 at 2074.769 kb on - strand, within CCNA_01928 at 2074.784 kb on - strand, within CCNA_01928 at 2074.784 kb on - strand, within CCNA_01928 at 2074.803 kb on + strand, within CCNA_01928 at 2074.803 kb on + strand, within CCNA_01928 at 2074.803 kb on + strand, within CCNA_01928 at 2074.803 kb on + strand, within CCNA_01928 at 2074.811 kb on - strand, within CCNA_01928 at 2074.854 kb on + strand, within CCNA_01928 at 2074.863 kb on + strand, within CCNA_01928 at 2075.026 kb on - strand at 2075.228 kb on + strand, within CCNA_01929 at 2075.228 kb on + strand, within CCNA_01929 at 2075.261 kb on - strand, within CCNA_01929 at 2075.360 kb on - strand, within CCNA_01929 at 2075.394 kb on + strand at 2075.412 kb on - strand at 2075.461 kb on - strand at 2075.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,072,861 + CCNA_01926 0.23 +1.1 2,072,882 - CCNA_01926 0.25 -0.5 2,072,906 - CCNA_01926 0.27 +2.1 2,072,954 - CCNA_01926 0.31 +0.2 2,073,000 - CCNA_01926 0.36 -1.1 2,073,182 - CCNA_01926 0.53 -0.0 2,073,204 - CCNA_01926 0.55 -1.0 2,073,227 - CCNA_01926 0.57 -0.0 2,073,257 + CCNA_01926 0.60 +0.2 2,073,265 - CCNA_01926 0.61 +1.0 2,073,275 - CCNA_01926 0.62 -0.5 2,073,282 + CCNA_01926 0.62 -0.1 2,073,290 - CCNA_01926 0.63 -1.7 2,073,357 - CCNA_01926 0.69 -0.8 2,073,357 - CCNA_01926 0.69 -0.8 2,073,357 - CCNA_01926 0.69 +1.3 2,073,403 - CCNA_01926 0.74 -0.7 2,073,441 + CCNA_01926 0.77 -0.0 2,073,496 - CCNA_01926 0.82 -1.1 2,073,542 - CCNA_01926 0.87 +1.2 2,073,651 + +0.2 2,073,659 - -1.1 2,073,699 - +0.2 2,073,699 - -0.5 2,073,777 - -0.3 2,073,779 + -1.2 2,073,811 - +1.0 2,073,823 - -1.0 2,073,845 + -0.2 2,073,850 + +0.8 2,073,871 - +2.4 2,073,903 + CCNA_01927 0.11 -0.0 2,073,911 - CCNA_01927 0.12 -0.4 2,073,933 - CCNA_01927 0.14 -0.4 2,073,934 - CCNA_01927 0.14 -0.2 2,073,956 - CCNA_01927 0.17 +0.4 2,073,972 + CCNA_01927 0.19 +0.1 2,073,980 - CCNA_01927 0.20 -0.3 2,073,980 - CCNA_01927 0.20 +0.7 2,073,984 - CCNA_01927 0.21 -0.4 2,074,148 + CCNA_01927 0.41 +0.3 2,074,148 + CCNA_01927 0.41 +0.1 2,074,148 + CCNA_01927 0.41 +1.5 2,074,177 - CCNA_01927 0.45 +0.6 2,074,232 - CCNA_01927 0.51 +0.7 2,074,256 - CCNA_01927 0.54 -0.7 2,074,257 - CCNA_01927 0.55 -0.3 2,074,279 - CCNA_01927 0.57 -1.0 2,074,436 - CCNA_01927 0.77 -0.6 2,074,446 - CCNA_01927 0.78 -1.4 2,074,446 - CCNA_01927 0.78 -0.1 2,074,485 - CCNA_01927 0.83 +0.9 2,074,485 - CCNA_01927 0.83 -0.3 2,074,485 - CCNA_01927 0.83 +1.2 2,074,486 - CCNA_01927 0.83 +0.2 2,074,496 - CCNA_01927 0.84 -0.0 2,074,513 + CCNA_01927 0.86 -0.6 2,074,532 + CCNA_01927 0.89 +0.5 2,074,586 + -0.2 2,074,594 - -1.1 2,074,604 + +0.5 2,074,606 + +0.0 2,074,614 - -0.7 2,074,614 - +0.4 2,074,632 - +0.2 2,074,637 + +0.8 2,074,679 - CCNA_01928 0.17 +0.9 2,074,688 - CCNA_01928 0.19 +0.3 2,074,698 + CCNA_01928 0.22 -0.9 2,074,769 - CCNA_01928 0.39 +0.5 2,074,784 - CCNA_01928 0.43 +1.0 2,074,784 - CCNA_01928 0.43 +1.0 2,074,803 + CCNA_01928 0.47 -1.3 2,074,803 + CCNA_01928 0.47 -0.6 2,074,803 + CCNA_01928 0.47 +0.4 2,074,803 + CCNA_01928 0.47 -1.1 2,074,811 - CCNA_01928 0.49 +3.0 2,074,854 + CCNA_01928 0.60 -2.3 2,074,863 + CCNA_01928 0.62 -0.3 2,075,026 - +0.3 2,075,228 + CCNA_01929 0.53 +0.9 2,075,228 + CCNA_01929 0.53 +0.1 2,075,261 - CCNA_01929 0.61 +0.6 2,075,360 - CCNA_01929 0.85 +0.7 2,075,394 + +0.5 2,075,412 - +0.5 2,075,461 - +0.9 2,075,462 - +0.1
Or see this region's nucleotide sequence