Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01918 and CCNA_01919 are separated by 81 nucleotides CCNA_01919 and CCNA_01920 are separated by 120 nucleotides
CCNA_01918: CCNA_01918 - cyclic di-GMP effector protein PopA, at 2,061,343 to 2,062,668
_01918
CCNA_01919: CCNA_01919 - FrnE protein, at 2,062,750 to 2,063,394
_01919
CCNA_01920: CCNA_01920 - transcription-repair coupling factor Mfd, at 2,063,515 to 2,066,982
_01920
Position (kb)
2062
2063
2064 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2061.825 kb on + strand, within CCNA_01918 at 2061.837 kb on + strand, within CCNA_01918 at 2061.837 kb on + strand, within CCNA_01918 at 2061.837 kb on + strand, within CCNA_01918 at 2061.845 kb on - strand, within CCNA_01918 at 2061.860 kb on + strand, within CCNA_01918 at 2061.868 kb on - strand, within CCNA_01918 at 2061.895 kb on + strand, within CCNA_01918 at 2061.934 kb on + strand, within CCNA_01918 at 2062.023 kb on + strand, within CCNA_01918 at 2062.023 kb on + strand, within CCNA_01918 at 2062.031 kb on - strand, within CCNA_01918 at 2062.031 kb on - strand, within CCNA_01918 at 2062.044 kb on - strand, within CCNA_01918 at 2062.064 kb on - strand, within CCNA_01918 at 2062.068 kb on - strand, within CCNA_01918 at 2062.196 kb on + strand, within CCNA_01918 at 2062.196 kb on + strand, within CCNA_01918 at 2062.209 kb on - strand, within CCNA_01918 at 2062.329 kb on + strand, within CCNA_01918 at 2062.466 kb on - strand, within CCNA_01918 at 2062.476 kb on + strand, within CCNA_01918 at 2062.477 kb on - strand, within CCNA_01918 at 2062.543 kb on + strand at 2062.596 kb on - strand at 2062.671 kb on - strand at 2062.711 kb on - strand at 2062.711 kb on - strand at 2062.913 kb on - strand, within CCNA_01919 at 2062.930 kb on + strand, within CCNA_01919 at 2062.947 kb on - strand, within CCNA_01919 at 2062.965 kb on + strand, within CCNA_01919 at 2062.971 kb on - strand, within CCNA_01919 at 2062.973 kb on - strand, within CCNA_01919 at 2062.973 kb on - strand, within CCNA_01919 at 2062.973 kb on - strand, within CCNA_01919 at 2062.989 kb on + strand, within CCNA_01919 at 2062.989 kb on + strand, within CCNA_01919 at 2062.997 kb on - strand, within CCNA_01919 at 2063.017 kb on + strand, within CCNA_01919 at 2063.052 kb on + strand, within CCNA_01919 at 2063.052 kb on + strand, within CCNA_01919 at 2063.060 kb on - strand, within CCNA_01919 at 2063.068 kb on + strand, within CCNA_01919 at 2063.086 kb on - strand, within CCNA_01919 at 2063.103 kb on + strand, within CCNA_01919 at 2063.117 kb on - strand, within CCNA_01919 at 2063.138 kb on - strand, within CCNA_01919 at 2063.154 kb on - strand, within CCNA_01919 at 2063.154 kb on - strand, within CCNA_01919 at 2063.199 kb on + strand, within CCNA_01919 at 2063.237 kb on - strand, within CCNA_01919 at 2063.237 kb on - strand, within CCNA_01919 at 2063.268 kb on + strand, within CCNA_01919 at 2063.278 kb on + strand, within CCNA_01919 at 2063.278 kb on + strand, within CCNA_01919 at 2063.382 kb on - strand at 2063.418 kb on - strand at 2063.468 kb on - strand at 2063.506 kb on + strand at 2063.514 kb on - strand at 2063.559 kb on - strand at 2063.616 kb on - strand at 2063.616 kb on - strand at 2063.662 kb on - strand at 2063.681 kb on - strand at 2063.691 kb on + strand at 2063.747 kb on - strand at 2063.782 kb on - strand at 2063.833 kb on + strand at 2063.841 kb on - strand at 2063.841 kb on - strand at 2063.864 kb on + strand, within CCNA_01920 at 2063.864 kb on + strand, within CCNA_01920 at 2063.872 kb on - strand, within CCNA_01920 at 2063.872 kb on - strand, within CCNA_01920 at 2064.050 kb on + strand, within CCNA_01920 at 2064.093 kb on - strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.111 kb on + strand, within CCNA_01920 at 2064.119 kb on - strand, within CCNA_01920 at 2064.127 kb on + strand, within CCNA_01920 at 2064.132 kb on + strand, within CCNA_01920 at 2064.132 kb on + strand, within CCNA_01920 at 2064.140 kb on - strand, within CCNA_01920 at 2064.205 kb on + strand, within CCNA_01920 at 2064.205 kb on - strand, within CCNA_01920 at 2064.272 kb on + strand, within CCNA_01920 at 2064.278 kb on + strand, within CCNA_01920 at 2064.320 kb on + strand, within CCNA_01920 at 2064.337 kb on + strand, within CCNA_01920 at 2064.388 kb on - strand, within CCNA_01920
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,061,825 + CCNA_01918 0.36 +0.2 2,061,837 + CCNA_01918 0.37 +0.3 2,061,837 + CCNA_01918 0.37 +0.6 2,061,837 + CCNA_01918 0.37 +0.4 2,061,845 - CCNA_01918 0.38 +0.1 2,061,860 + CCNA_01918 0.39 +0.3 2,061,868 - CCNA_01918 0.40 +0.2 2,061,895 + CCNA_01918 0.42 +0.8 2,061,934 + CCNA_01918 0.45 -1.1 2,062,023 + CCNA_01918 0.51 +0.2 2,062,023 + CCNA_01918 0.51 +1.4 2,062,031 - CCNA_01918 0.52 +0.0 2,062,031 - CCNA_01918 0.52 -0.2 2,062,044 - CCNA_01918 0.53 -0.2 2,062,064 - CCNA_01918 0.54 -0.3 2,062,068 - CCNA_01918 0.55 -1.8 2,062,196 + CCNA_01918 0.64 +0.5 2,062,196 + CCNA_01918 0.64 +0.1 2,062,209 - CCNA_01918 0.65 -0.8 2,062,329 + CCNA_01918 0.74 +0.7 2,062,466 - CCNA_01918 0.85 +0.3 2,062,476 + CCNA_01918 0.85 +0.3 2,062,477 - CCNA_01918 0.86 +0.1 2,062,543 + +1.1 2,062,596 - -0.9 2,062,671 - +0.7 2,062,711 - +0.2 2,062,711 - +0.9 2,062,913 - CCNA_01919 0.25 -0.1 2,062,930 + CCNA_01919 0.28 +1.8 2,062,947 - CCNA_01919 0.31 -0.1 2,062,965 + CCNA_01919 0.33 -0.2 2,062,971 - CCNA_01919 0.34 -0.4 2,062,973 - CCNA_01919 0.35 -0.2 2,062,973 - CCNA_01919 0.35 -0.3 2,062,973 - CCNA_01919 0.35 +2.2 2,062,989 + CCNA_01919 0.37 +0.9 2,062,989 + CCNA_01919 0.37 +0.9 2,062,997 - CCNA_01919 0.38 +0.0 2,063,017 + CCNA_01919 0.41 -0.1 2,063,052 + CCNA_01919 0.47 -0.0 2,063,052 + CCNA_01919 0.47 -0.2 2,063,060 - CCNA_01919 0.48 +1.0 2,063,068 + CCNA_01919 0.49 -0.2 2,063,086 - CCNA_01919 0.52 +0.3 2,063,103 + CCNA_01919 0.55 +0.8 2,063,117 - CCNA_01919 0.57 -0.6 2,063,138 - CCNA_01919 0.60 +0.4 2,063,154 - CCNA_01919 0.63 -1.1 2,063,154 - CCNA_01919 0.63 -0.5 2,063,199 + CCNA_01919 0.70 -0.1 2,063,237 - CCNA_01919 0.76 -1.1 2,063,237 - CCNA_01919 0.76 +0.1 2,063,268 + CCNA_01919 0.80 -0.2 2,063,278 + CCNA_01919 0.82 -0.8 2,063,278 + CCNA_01919 0.82 +0.8 2,063,382 - -0.6 2,063,418 - +0.4 2,063,468 - +0.8 2,063,506 + -0.5 2,063,514 - +0.9 2,063,559 - +0.4 2,063,616 - -0.6 2,063,616 - +1.0 2,063,662 - +0.5 2,063,681 - +0.3 2,063,691 + +0.1 2,063,747 - -0.2 2,063,782 - +0.1 2,063,833 + +0.7 2,063,841 - -0.0 2,063,841 - +0.0 2,063,864 + CCNA_01920 0.10 +1.1 2,063,864 + CCNA_01920 0.10 -0.2 2,063,872 - CCNA_01920 0.10 +0.3 2,063,872 - CCNA_01920 0.10 +0.2 2,064,050 + CCNA_01920 0.15 +0.6 2,064,093 - CCNA_01920 0.17 -1.0 2,064,111 + CCNA_01920 0.17 +0.1 2,064,111 + CCNA_01920 0.17 +0.4 2,064,111 + CCNA_01920 0.17 -3.7 2,064,111 + CCNA_01920 0.17 -1.2 2,064,111 + CCNA_01920 0.17 +2.2 2,064,111 + CCNA_01920 0.17 -0.2 2,064,119 - CCNA_01920 0.17 +0.5 2,064,127 + CCNA_01920 0.18 +0.7 2,064,132 + CCNA_01920 0.18 -1.1 2,064,132 + CCNA_01920 0.18 +2.5 2,064,140 - CCNA_01920 0.18 -0.9 2,064,205 + CCNA_01920 0.20 -0.8 2,064,205 - CCNA_01920 0.20 +0.1 2,064,272 + CCNA_01920 0.22 +1.0 2,064,278 + CCNA_01920 0.22 -0.5 2,064,320 + CCNA_01920 0.23 -0.5 2,064,337 + CCNA_01920 0.24 +0.3 2,064,388 - CCNA_01920 0.25 +0.7
Or see this region's nucleotide sequence