Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01895 and CCNA_01896 are separated by 473 nucleotides CCNA_01896 and CCNA_01897 are separated by 270 nucleotides
CCNA_01895: CCNA_01895 - transporter, major facilitator superfamily, at 2,037,657 to 2,039,096
_01895
CCNA_01896: CCNA_01896 - hypothetical protein, at 2,039,570 to 2,039,776
_01896
CCNA_01897: CCNA_01897 - metal-dependent hydrolase, at 2,040,047 to 2,040,853
_01897
Position (kb)
2039
2040 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2038.584 kb on + strand, within CCNA_01895 at 2038.586 kb on - strand, within CCNA_01895 at 2038.676 kb on - strand, within CCNA_01895 at 2038.708 kb on + strand, within CCNA_01895 at 2038.812 kb on + strand, within CCNA_01895 at 2038.824 kb on + strand, within CCNA_01895 at 2038.824 kb on + strand, within CCNA_01895 at 2038.840 kb on + strand, within CCNA_01895 at 2038.891 kb on + strand, within CCNA_01895 at 2038.951 kb on + strand, within CCNA_01895 at 2038.952 kb on + strand, within CCNA_01895 at 2038.952 kb on + strand, within CCNA_01895 at 2038.952 kb on + strand, within CCNA_01895 at 2038.952 kb on + strand, within CCNA_01895 at 2038.952 kb on + strand, within CCNA_01895 at 2038.959 kb on - strand at 2038.960 kb on - strand at 2038.962 kb on + strand at 2038.970 kb on - strand at 2038.970 kb on - strand at 2038.992 kb on - strand at 2038.992 kb on - strand at 2039.011 kb on + strand at 2039.048 kb on - strand at 2039.081 kb on + strand at 2039.081 kb on - strand at 2039.108 kb on - strand at 2039.127 kb on + strand at 2039.208 kb on + strand at 2039.216 kb on - strand at 2039.240 kb on - strand at 2039.266 kb on + strand at 2039.266 kb on + strand at 2039.266 kb on - strand at 2039.266 kb on - strand at 2039.274 kb on - strand at 2039.274 kb on - strand at 2039.274 kb on - strand at 2039.293 kb on - strand at 2039.297 kb on + strand at 2039.305 kb on - strand at 2039.305 kb on - strand at 2039.305 kb on - strand at 2039.305 kb on - strand at 2039.351 kb on - strand at 2039.352 kb on + strand at 2039.360 kb on - strand at 2039.360 kb on - strand at 2039.360 kb on - strand at 2039.417 kb on - strand at 2039.440 kb on + strand at 2039.559 kb on - strand at 2039.618 kb on + strand, within CCNA_01896 at 2039.738 kb on + strand, within CCNA_01896 at 2039.744 kb on - strand, within CCNA_01896 at 2039.797 kb on - strand at 2039.865 kb on - strand at 2039.891 kb on - strand at 2039.909 kb on - strand at 2039.910 kb on - strand at 2039.910 kb on - strand at 2039.910 kb on - strand at 2039.910 kb on - strand at 2039.935 kb on + strand at 2040.053 kb on - strand at 2040.148 kb on - strand, within CCNA_01897 at 2040.203 kb on - strand, within CCNA_01897 at 2040.203 kb on - strand, within CCNA_01897 at 2040.224 kb on + strand, within CCNA_01897 at 2040.275 kb on - strand, within CCNA_01897 at 2040.275 kb on - strand, within CCNA_01897 at 2040.278 kb on + strand, within CCNA_01897 at 2040.303 kb on + strand, within CCNA_01897 at 2040.311 kb on - strand, within CCNA_01897 at 2040.311 kb on - strand, within CCNA_01897 at 2040.311 kb on - strand, within CCNA_01897 at 2040.311 kb on - strand, within CCNA_01897 at 2040.475 kb on - strand, within CCNA_01897 at 2040.480 kb on - strand, within CCNA_01897 at 2040.480 kb on - strand, within CCNA_01897 at 2040.481 kb on - strand, within CCNA_01897 at 2040.498 kb on - strand, within CCNA_01897 at 2040.499 kb on - strand, within CCNA_01897 at 2040.581 kb on + strand, within CCNA_01897 at 2040.608 kb on - strand, within CCNA_01897 at 2040.645 kb on - strand, within CCNA_01897 at 2040.652 kb on - strand, within CCNA_01897 at 2040.658 kb on + strand, within CCNA_01897 at 2040.766 kb on + strand, within CCNA_01897 at 2040.766 kb on + strand, within CCNA_01897 at 2040.774 kb on - strand at 2040.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,038,584 + CCNA_01895 0.64 -1.6 2,038,586 - CCNA_01895 0.65 +0.1 2,038,676 - CCNA_01895 0.71 +1.0 2,038,708 + CCNA_01895 0.73 -0.5 2,038,812 + CCNA_01895 0.80 -0.5 2,038,824 + CCNA_01895 0.81 -1.0 2,038,824 + CCNA_01895 0.81 +1.5 2,038,840 + CCNA_01895 0.82 +0.4 2,038,891 + CCNA_01895 0.86 +0.4 2,038,951 + CCNA_01895 0.90 -0.3 2,038,952 + CCNA_01895 0.90 -1.6 2,038,952 + CCNA_01895 0.90 -0.3 2,038,952 + CCNA_01895 0.90 -0.1 2,038,952 + CCNA_01895 0.90 -1.4 2,038,952 + CCNA_01895 0.90 +0.8 2,038,959 - +0.1 2,038,960 - -0.2 2,038,962 + -0.1 2,038,970 - -1.0 2,038,970 - -0.2 2,038,992 - -0.9 2,038,992 - -1.5 2,039,011 + -0.5 2,039,048 - -1.0 2,039,081 + -0.6 2,039,081 - -0.3 2,039,108 - +0.4 2,039,127 + -0.2 2,039,208 + -1.4 2,039,216 - -1.3 2,039,240 - -0.1 2,039,266 + -0.2 2,039,266 + +0.8 2,039,266 - -0.1 2,039,266 - +0.0 2,039,274 - -1.6 2,039,274 - -0.7 2,039,274 - +2.4 2,039,293 - -0.4 2,039,297 + -1.4 2,039,305 - +0.4 2,039,305 - -0.3 2,039,305 - +0.2 2,039,305 - -1.1 2,039,351 - -0.5 2,039,352 + +1.8 2,039,360 - +0.6 2,039,360 - +0.0 2,039,360 - +0.2 2,039,417 - -0.7 2,039,440 + -0.9 2,039,559 - -0.0 2,039,618 + CCNA_01896 0.23 -2.3 2,039,738 + CCNA_01896 0.81 -0.2 2,039,744 - CCNA_01896 0.84 +0.2 2,039,797 - -1.3 2,039,865 - -2.1 2,039,891 - +0.2 2,039,909 - -0.3 2,039,910 - -0.5 2,039,910 - -1.0 2,039,910 - -0.1 2,039,910 - +0.2 2,039,935 + +0.2 2,040,053 - -0.1 2,040,148 - CCNA_01897 0.13 +0.2 2,040,203 - CCNA_01897 0.19 +0.8 2,040,203 - CCNA_01897 0.19 +0.3 2,040,224 + CCNA_01897 0.22 +0.0 2,040,275 - CCNA_01897 0.28 +0.2 2,040,275 - CCNA_01897 0.28 +0.8 2,040,278 + CCNA_01897 0.29 -1.6 2,040,303 + CCNA_01897 0.32 +0.3 2,040,311 - CCNA_01897 0.33 +0.6 2,040,311 - CCNA_01897 0.33 -0.2 2,040,311 - CCNA_01897 0.33 +0.1 2,040,311 - CCNA_01897 0.33 +0.5 2,040,475 - CCNA_01897 0.53 +0.3 2,040,480 - CCNA_01897 0.54 +0.4 2,040,480 - CCNA_01897 0.54 +0.1 2,040,481 - CCNA_01897 0.54 +0.5 2,040,498 - CCNA_01897 0.56 -0.2 2,040,499 - CCNA_01897 0.56 -0.1 2,040,581 + CCNA_01897 0.66 -0.5 2,040,608 - CCNA_01897 0.70 -0.3 2,040,645 - CCNA_01897 0.74 +0.0 2,040,652 - CCNA_01897 0.75 +0.8 2,040,658 + CCNA_01897 0.76 -1.1 2,040,766 + CCNA_01897 0.89 -1.7 2,040,766 + CCNA_01897 0.89 -1.1 2,040,774 - +0.3 2,040,774 - -0.4
Or see this region's nucleotide sequence