Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01835 and CCNA_01836 are separated by 57 nucleotides CCNA_01836 and CCNA_01837 are separated by 148 nucleotides CCNA_01837 and CCNA_01840 are separated by 800 nucleotides
CCNA_01835: CCNA_01835 - ABC transporter ATP-binding protein, at 1,967,528 to 1,968,214
_01835
CCNA_01836: CCNA_01836 - acyl-CoA thioesterase I/lysophospholipase, at 1,968,272 to 1,968,904
_01836
CCNA_01837: CCNA_01837 - transposase, IS30 family, at 1,969,053 to 1,970,081
_01837
CCNA_01840: CCNA_01840 - MerR-family transcriptional regulator, at 1,970,882 to 1,972,324
_01840
Position (kb)
1969
1970
1971 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1968.106 kb on + strand, within CCNA_01835 at 1968.112 kb on + strand, within CCNA_01835 at 1968.114 kb on - strand, within CCNA_01835 at 1968.157 kb on + strand at 1968.158 kb on + strand at 1968.160 kb on - strand at 1968.165 kb on - strand at 1968.166 kb on - strand at 1968.179 kb on + strand at 1968.187 kb on - strand at 1968.260 kb on + strand at 1968.263 kb on - strand at 1968.364 kb on + strand, within CCNA_01836 at 1968.372 kb on - strand, within CCNA_01836 at 1968.385 kb on + strand, within CCNA_01836 at 1968.403 kb on + strand, within CCNA_01836 at 1968.434 kb on + strand, within CCNA_01836 at 1968.434 kb on + strand, within CCNA_01836 at 1968.436 kb on + strand, within CCNA_01836 at 1968.436 kb on + strand, within CCNA_01836 at 1968.436 kb on + strand, within CCNA_01836 at 1968.442 kb on - strand, within CCNA_01836 at 1968.454 kb on - strand, within CCNA_01836 at 1968.454 kb on - strand, within CCNA_01836 at 1968.471 kb on - strand, within CCNA_01836 at 1968.608 kb on + strand, within CCNA_01836 at 1968.613 kb on + strand, within CCNA_01836 at 1968.669 kb on - strand, within CCNA_01836 at 1968.671 kb on + strand, within CCNA_01836 at 1968.671 kb on + strand, within CCNA_01836 at 1968.676 kb on + strand, within CCNA_01836 at 1968.777 kb on - strand, within CCNA_01836 at 1968.857 kb on - strand at 1968.877 kb on - strand at 1968.974 kb on + strand at 1968.977 kb on - strand at 1968.992 kb on - strand at 1969.051 kb on + strand at 1969.127 kb on - strand at 1969.186 kb on - strand, within CCNA_01837 at 1969.247 kb on + strand, within CCNA_01837 at 1969.252 kb on - strand, within CCNA_01837 at 1969.254 kb on + strand, within CCNA_01837 at 1969.323 kb on + strand, within CCNA_01837 at 1969.331 kb on - strand, within CCNA_01837 at 1969.474 kb on - strand, within CCNA_01837 at 1969.493 kb on - strand, within CCNA_01837 at 1969.500 kb on + strand, within CCNA_01837 at 1969.509 kb on + strand, within CCNA_01837 at 1969.509 kb on + strand, within CCNA_01837 at 1969.509 kb on + strand, within CCNA_01837 at 1969.517 kb on - strand, within CCNA_01837 at 1969.552 kb on - strand, within CCNA_01837 at 1969.565 kb on - strand, within CCNA_01837 at 1969.615 kb on - strand, within CCNA_01837 at 1969.643 kb on - strand, within CCNA_01837 at 1969.675 kb on + strand, within CCNA_01837 at 1969.708 kb on - strand, within CCNA_01837 at 1969.727 kb on - strand, within CCNA_01837 at 1969.746 kb on + strand, within CCNA_01837 at 1969.748 kb on - strand, within CCNA_01837 at 1969.755 kb on - strand, within CCNA_01837 at 1969.757 kb on + strand, within CCNA_01837 at 1969.765 kb on + strand, within CCNA_01837 at 1969.787 kb on + strand, within CCNA_01837 at 1969.827 kb on - strand, within CCNA_01837 at 1969.827 kb on - strand, within CCNA_01837 at 1969.835 kb on + strand, within CCNA_01837 at 1969.843 kb on - strand, within CCNA_01837 at 1969.845 kb on + strand, within CCNA_01837 at 1969.874 kb on + strand, within CCNA_01837 at 1969.919 kb on + strand, within CCNA_01837 at 1969.927 kb on - strand, within CCNA_01837 at 1969.927 kb on - strand, within CCNA_01837 at 1969.978 kb on + strand, within CCNA_01837 at 1969.978 kb on + strand, within CCNA_01837 at 1969.986 kb on - strand at 1969.988 kb on + strand at 1970.001 kb on - strand at 1970.001 kb on - strand at 1970.216 kb on - strand at 1970.275 kb on - strand at 1970.282 kb on - strand at 1970.323 kb on - strand at 1970.333 kb on + strand at 1970.338 kb on + strand at 1970.389 kb on - strand at 1970.425 kb on + strand at 1970.492 kb on + strand at 1970.516 kb on - strand at 1970.525 kb on + strand at 1970.575 kb on + strand at 1970.583 kb on - strand at 1970.583 kb on - strand at 1970.583 kb on - strand at 1970.599 kb on + strand at 1970.614 kb on + strand at 1970.622 kb on + strand at 1970.633 kb on + strand at 1970.633 kb on + strand at 1970.641 kb on - strand at 1970.641 kb on - strand at 1970.641 kb on - strand at 1970.654 kb on + strand at 1970.706 kb on + strand at 1970.760 kb on - strand at 1970.784 kb on + strand at 1970.793 kb on + strand at 1970.803 kb on + strand at 1970.842 kb on - strand at 1970.847 kb on - strand at 1970.941 kb on + strand at 1970.962 kb on + strand at 1970.963 kb on + strand at 1970.995 kb on - strand at 1970.995 kb on - strand at 1971.016 kb on - strand at 1971.056 kb on - strand, within CCNA_01840
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,968,106 + CCNA_01835 0.84 -1.2 1,968,112 + CCNA_01835 0.85 +0.6 1,968,114 - CCNA_01835 0.85 +0.3 1,968,157 + +1.7 1,968,158 + +1.0 1,968,160 - +2.1 1,968,165 - +0.1 1,968,166 - +1.3 1,968,179 + -0.3 1,968,187 - +1.1 1,968,260 + +0.6 1,968,263 - +1.1 1,968,364 + CCNA_01836 0.15 +0.6 1,968,372 - CCNA_01836 0.16 +1.0 1,968,385 + CCNA_01836 0.18 -1.2 1,968,403 + CCNA_01836 0.21 -1.5 1,968,434 + CCNA_01836 0.26 -0.0 1,968,434 + CCNA_01836 0.26 -0.2 1,968,436 + CCNA_01836 0.26 +0.3 1,968,436 + CCNA_01836 0.26 -0.4 1,968,436 + CCNA_01836 0.26 -0.2 1,968,442 - CCNA_01836 0.27 -1.1 1,968,454 - CCNA_01836 0.29 -1.6 1,968,454 - CCNA_01836 0.29 -0.3 1,968,471 - CCNA_01836 0.31 -2.3 1,968,608 + CCNA_01836 0.53 -0.7 1,968,613 + CCNA_01836 0.54 +0.1 1,968,669 - CCNA_01836 0.63 -0.2 1,968,671 + CCNA_01836 0.63 -0.3 1,968,671 + CCNA_01836 0.63 -0.1 1,968,676 + CCNA_01836 0.64 -0.6 1,968,777 - CCNA_01836 0.80 +1.1 1,968,857 - -0.3 1,968,877 - +1.3 1,968,974 + +0.3 1,968,977 - -2.2 1,968,992 - -1.3 1,969,051 + +0.6 1,969,127 - +0.5 1,969,186 - CCNA_01837 0.13 +0.9 1,969,247 + CCNA_01837 0.19 +0.4 1,969,252 - CCNA_01837 0.19 +0.5 1,969,254 + CCNA_01837 0.20 +0.9 1,969,323 + CCNA_01837 0.26 -0.9 1,969,331 - CCNA_01837 0.27 -0.7 1,969,474 - CCNA_01837 0.41 -0.5 1,969,493 - CCNA_01837 0.43 -2.0 1,969,500 + CCNA_01837 0.43 +0.1 1,969,509 + CCNA_01837 0.44 -0.6 1,969,509 + CCNA_01837 0.44 +0.1 1,969,509 + CCNA_01837 0.44 -0.8 1,969,517 - CCNA_01837 0.45 -1.8 1,969,552 - CCNA_01837 0.48 -0.7 1,969,565 - CCNA_01837 0.50 +0.3 1,969,615 - CCNA_01837 0.55 +0.3 1,969,643 - CCNA_01837 0.57 -0.2 1,969,675 + CCNA_01837 0.60 -2.3 1,969,708 - CCNA_01837 0.64 +0.9 1,969,727 - CCNA_01837 0.66 +0.3 1,969,746 + CCNA_01837 0.67 +0.4 1,969,748 - CCNA_01837 0.68 +0.5 1,969,755 - CCNA_01837 0.68 -1.1 1,969,757 + CCNA_01837 0.68 +1.6 1,969,765 + CCNA_01837 0.69 -0.9 1,969,787 + CCNA_01837 0.71 +0.3 1,969,827 - CCNA_01837 0.75 -0.7 1,969,827 - CCNA_01837 0.75 -0.7 1,969,835 + CCNA_01837 0.76 -1.1 1,969,843 - CCNA_01837 0.77 +0.3 1,969,845 + CCNA_01837 0.77 -0.4 1,969,874 + CCNA_01837 0.80 -0.5 1,969,919 + CCNA_01837 0.84 -1.4 1,969,927 - CCNA_01837 0.85 -1.0 1,969,927 - CCNA_01837 0.85 -3.5 1,969,978 + CCNA_01837 0.90 +0.5 1,969,978 + CCNA_01837 0.90 +0.1 1,969,986 - +0.9 1,969,988 + -1.7 1,970,001 - -1.7 1,970,001 - -1.8 1,970,216 - -3.1 1,970,275 - -0.3 1,970,282 - -0.8 1,970,323 - +1.1 1,970,333 + -1.9 1,970,338 + -0.7 1,970,389 - -1.8 1,970,425 + -2.5 1,970,492 + +0.5 1,970,516 - -0.4 1,970,525 + +1.0 1,970,575 + -1.0 1,970,583 - +1.7 1,970,583 - -0.5 1,970,583 - -1.7 1,970,599 + +0.5 1,970,614 + -0.6 1,970,622 + -0.1 1,970,633 + -1.1 1,970,633 + -0.7 1,970,641 - -0.1 1,970,641 - +0.3 1,970,641 - +0.8 1,970,654 + +0.1 1,970,706 + -0.9 1,970,760 - -0.3 1,970,784 + -0.2 1,970,793 + -0.8 1,970,803 + -0.4 1,970,842 - +0.8 1,970,847 - -0.2 1,970,941 + +1.9 1,970,962 + -1.0 1,970,963 + -0.9 1,970,995 - +0.4 1,970,995 - +1.1 1,971,016 - +0.5 1,971,056 - CCNA_01840 0.12 +0.5
Or see this region's nucleotide sequence