Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01818 and CCNA_01819 are separated by 157 nucleotides CCNA_01819 and CCNA_01820 are separated by 12 nucleotides
CCNA_01818: CCNA_01818 - D-alanine aminotransferase, at 1,944,941 to 1,945,804
_01818
CCNA_01819: CCNA_01819 - RNA-binding protein, Hfq family, at 1,945,962 to 1,946,210
_01819
CCNA_01820: CCNA_01820 - GTP-binding protein hflX, at 1,946,223 to 1,947,563
_01820
Position (kb)
1945
1946
1947 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1945.107 kb on + strand, within CCNA_01818 at 1945.107 kb on + strand, within CCNA_01818 at 1945.107 kb on + strand, within CCNA_01818 at 1945.115 kb on - strand, within CCNA_01818 at 1945.128 kb on - strand, within CCNA_01818 at 1945.160 kb on + strand, within CCNA_01818 at 1945.194 kb on + strand, within CCNA_01818 at 1945.199 kb on + strand, within CCNA_01818 at 1945.241 kb on + strand, within CCNA_01818 at 1945.248 kb on - strand, within CCNA_01818 at 1945.272 kb on + strand, within CCNA_01818 at 1945.312 kb on + strand, within CCNA_01818 at 1945.318 kb on + strand, within CCNA_01818 at 1945.326 kb on - strand, within CCNA_01818 at 1945.326 kb on - strand, within CCNA_01818 at 1945.402 kb on + strand, within CCNA_01818 at 1945.416 kb on - strand, within CCNA_01818 at 1945.467 kb on + strand, within CCNA_01818 at 1945.509 kb on - strand, within CCNA_01818 at 1945.526 kb on + strand, within CCNA_01818 at 1945.526 kb on + strand, within CCNA_01818 at 1945.536 kb on + strand, within CCNA_01818 at 1945.537 kb on - strand, within CCNA_01818 at 1945.583 kb on - strand, within CCNA_01818 at 1945.585 kb on + strand, within CCNA_01818 at 1945.591 kb on - strand, within CCNA_01818 at 1945.593 kb on - strand, within CCNA_01818 at 1945.608 kb on + strand, within CCNA_01818 at 1945.628 kb on + strand, within CCNA_01818 at 1945.716 kb on + strand, within CCNA_01818 at 1945.724 kb on - strand at 1945.898 kb on + strand at 1945.915 kb on - strand at 1946.211 kb on + strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.447 kb on + strand, within CCNA_01820 at 1946.449 kb on - strand, within CCNA_01820 at 1946.524 kb on - strand, within CCNA_01820 at 1946.524 kb on - strand, within CCNA_01820 at 1946.524 kb on - strand, within CCNA_01820 at 1946.580 kb on + strand, within CCNA_01820 at 1946.633 kb on - strand, within CCNA_01820 at 1946.645 kb on + strand, within CCNA_01820 at 1946.648 kb on - strand, within CCNA_01820 at 1946.648 kb on - strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.689 kb on - strand, within CCNA_01820 at 1946.770 kb on - strand, within CCNA_01820 at 1946.831 kb on + strand, within CCNA_01820 at 1946.831 kb on + strand, within CCNA_01820 at 1946.858 kb on + strand, within CCNA_01820 at 1946.866 kb on + strand, within CCNA_01820 at 1946.909 kb on + strand, within CCNA_01820 at 1946.909 kb on + strand, within CCNA_01820 at 1946.942 kb on - strand, within CCNA_01820 at 1946.962 kb on + strand, within CCNA_01820 at 1946.969 kb on - strand, within CCNA_01820 at 1947.067 kb on - strand, within CCNA_01820 at 1947.090 kb on + strand, within CCNA_01820 at 1947.126 kb on - strand, within CCNA_01820 at 1947.175 kb on + strand, within CCNA_01820 at 1947.203 kb on + strand, within CCNA_01820 at 1947.208 kb on + strand, within CCNA_01820
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,945,107 + CCNA_01818 0.19 +0.5 1,945,107 + CCNA_01818 0.19 +0.2 1,945,107 + CCNA_01818 0.19 +0.4 1,945,115 - CCNA_01818 0.20 -2.3 1,945,128 - CCNA_01818 0.22 +0.4 1,945,160 + CCNA_01818 0.25 +0.0 1,945,194 + CCNA_01818 0.29 +0.8 1,945,199 + CCNA_01818 0.30 +0.5 1,945,241 + CCNA_01818 0.35 +0.7 1,945,248 - CCNA_01818 0.36 -0.1 1,945,272 + CCNA_01818 0.38 +0.3 1,945,312 + CCNA_01818 0.43 +0.1 1,945,318 + CCNA_01818 0.44 -0.9 1,945,326 - CCNA_01818 0.45 +0.1 1,945,326 - CCNA_01818 0.45 +0.0 1,945,402 + CCNA_01818 0.53 -1.8 1,945,416 - CCNA_01818 0.55 -0.6 1,945,467 + CCNA_01818 0.61 +0.2 1,945,509 - CCNA_01818 0.66 +0.1 1,945,526 + CCNA_01818 0.68 -0.2 1,945,526 + CCNA_01818 0.68 -0.1 1,945,536 + CCNA_01818 0.69 -0.0 1,945,537 - CCNA_01818 0.69 -0.3 1,945,583 - CCNA_01818 0.74 -0.3 1,945,585 + CCNA_01818 0.75 +0.6 1,945,591 - CCNA_01818 0.75 +0.6 1,945,593 - CCNA_01818 0.75 -0.1 1,945,608 + CCNA_01818 0.77 -0.6 1,945,628 + CCNA_01818 0.80 +1.5 1,945,716 + CCNA_01818 0.90 +0.9 1,945,724 - +0.9 1,945,898 + +0.5 1,945,915 - -2.4 1,946,211 + +0.1 1,946,219 - -0.3 1,946,219 - -0.6 1,946,219 - +0.3 1,946,219 - -2.4 1,946,219 - -0.7 1,946,447 + CCNA_01820 0.17 -0.6 1,946,449 - CCNA_01820 0.17 -0.1 1,946,524 - CCNA_01820 0.22 +0.6 1,946,524 - CCNA_01820 0.22 -0.7 1,946,524 - CCNA_01820 0.22 +0.1 1,946,580 + CCNA_01820 0.27 +0.4 1,946,633 - CCNA_01820 0.31 -2.2 1,946,645 + CCNA_01820 0.31 +0.9 1,946,648 - CCNA_01820 0.32 -0.5 1,946,648 - CCNA_01820 0.32 -0.4 1,946,681 + CCNA_01820 0.34 +0.7 1,946,681 + CCNA_01820 0.34 +0.5 1,946,681 + CCNA_01820 0.34 -0.3 1,946,681 + CCNA_01820 0.34 -0.5 1,946,689 - CCNA_01820 0.35 -0.7 1,946,770 - CCNA_01820 0.41 -1.0 1,946,831 + CCNA_01820 0.45 +1.8 1,946,831 + CCNA_01820 0.45 -0.2 1,946,858 + CCNA_01820 0.47 +1.0 1,946,866 + CCNA_01820 0.48 +0.1 1,946,909 + CCNA_01820 0.51 +0.2 1,946,909 + CCNA_01820 0.51 +0.6 1,946,942 - CCNA_01820 0.54 -0.2 1,946,962 + CCNA_01820 0.55 -0.2 1,946,969 - CCNA_01820 0.56 -1.9 1,947,067 - CCNA_01820 0.63 -1.1 1,947,090 + CCNA_01820 0.65 +0.7 1,947,126 - CCNA_01820 0.67 +0.2 1,947,175 + CCNA_01820 0.71 +0.5 1,947,203 + CCNA_01820 0.73 +0.9 1,947,208 + CCNA_01820 0.73 -2.9
Or see this region's nucleotide sequence