Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01813 and CCNA_01814 overlap by 4 nucleotides CCNA_01814 and CCNA_01815 overlap by 4 nucleotides
CCNA_01813: CCNA_01813 - tRNA-dihydrouridine synthase, at 1,937,704 to 1,938,711
_01813
CCNA_01814: CCNA_01814 - nitrogen regulation protein ntrB, at 1,938,708 to 1,939,829
_01814
CCNA_01815: CCNA_01815 - nitrogen assimilation regulatory protein NtrC, at 1,939,826 to 1,941,247
_01815
Position (kb)
1938
1939
1940 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1937.737 kb on + strand at 1937.748 kb on + strand at 1937.901 kb on + strand, within CCNA_01813 at 1937.902 kb on + strand, within CCNA_01813 at 1937.929 kb on - strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.063 kb on - strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.108 kb on - strand, within CCNA_01813 at 1938.110 kb on + strand, within CCNA_01813 at 1938.134 kb on + strand, within CCNA_01813 at 1938.220 kb on + strand, within CCNA_01813 at 1938.220 kb on + strand, within CCNA_01813 at 1938.228 kb on - strand, within CCNA_01813 at 1938.254 kb on - strand, within CCNA_01813 at 1938.299 kb on - strand, within CCNA_01813 at 1938.363 kb on + strand, within CCNA_01813 at 1938.371 kb on - strand, within CCNA_01813 at 1938.429 kb on - strand, within CCNA_01813 at 1938.436 kb on + strand, within CCNA_01813 at 1938.444 kb on - strand, within CCNA_01813 at 1938.444 kb on - strand, within CCNA_01813 at 1938.478 kb on + strand, within CCNA_01813 at 1938.519 kb on + strand, within CCNA_01813 at 1938.546 kb on - strand, within CCNA_01813 at 1938.573 kb on + strand, within CCNA_01813 at 1938.573 kb on + strand, within CCNA_01813 at 1938.614 kb on + strand at 1938.614 kb on + strand at 1938.646 kb on - strand at 1938.658 kb on + strand at 1938.750 kb on + strand at 1938.789 kb on + strand at 1938.892 kb on - strand, within CCNA_01814 at 1938.907 kb on + strand, within CCNA_01814 at 1938.929 kb on + strand, within CCNA_01814 at 1939.782 kb on + strand at 1939.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,937,737 + -0.1 1,937,748 + +0.5 1,937,901 + CCNA_01813 0.20 +0.7 1,937,902 + CCNA_01813 0.20 +0.5 1,937,929 - CCNA_01813 0.22 -2.6 1,938,055 + CCNA_01813 0.35 +1.0 1,938,055 + CCNA_01813 0.35 +0.4 1,938,055 + CCNA_01813 0.35 +0.5 1,938,055 + CCNA_01813 0.35 +0.3 1,938,055 + CCNA_01813 0.35 +0.2 1,938,063 - CCNA_01813 0.36 -1.4 1,938,068 + CCNA_01813 0.36 -0.0 1,938,068 + CCNA_01813 0.36 +0.0 1,938,068 + CCNA_01813 0.36 +2.0 1,938,108 - CCNA_01813 0.40 -0.3 1,938,110 + CCNA_01813 0.40 -0.1 1,938,134 + CCNA_01813 0.43 +0.2 1,938,220 + CCNA_01813 0.51 +0.1 1,938,220 + CCNA_01813 0.51 +0.8 1,938,228 - CCNA_01813 0.52 -0.6 1,938,254 - CCNA_01813 0.55 -0.2 1,938,299 - CCNA_01813 0.59 -0.1 1,938,363 + CCNA_01813 0.65 +0.3 1,938,371 - CCNA_01813 0.66 -1.0 1,938,429 - CCNA_01813 0.72 -0.9 1,938,436 + CCNA_01813 0.73 +1.0 1,938,444 - CCNA_01813 0.73 -0.4 1,938,444 - CCNA_01813 0.73 -0.1 1,938,478 + CCNA_01813 0.77 +0.3 1,938,519 + CCNA_01813 0.81 +0.2 1,938,546 - CCNA_01813 0.84 +0.3 1,938,573 + CCNA_01813 0.86 +0.5 1,938,573 + CCNA_01813 0.86 +0.5 1,938,614 + +0.3 1,938,614 + -0.4 1,938,646 - +1.3 1,938,658 + -0.3 1,938,750 + -0.6 1,938,789 + +0.3 1,938,892 - CCNA_01814 0.16 -0.4 1,938,907 + CCNA_01814 0.18 +0.1 1,938,929 + CCNA_01814 0.20 +0.3 1,939,782 + -1.2 1,939,807 + +0.8
Or see this region's nucleotide sequence