Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01793 and CCNA_01794 are separated by 12 nucleotides CCNA_01794 and CCNA_01795 are separated by 113 nucleotides CCNA_01795 and CCNA_01797 are separated by 353 nucleotides CCNA_01797 and CCNA_01799 are separated by 165 nucleotides
CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958
_01793
CCNA_01794: CCNA_01794 - enoyl-CoA hydratase/isomerase family, at 1,920,971 to 1,921,741
_01794
CCNA_01795: CCNA_01795 - phosphopyruvate hydratase, at 1,921,855 to 1,923,135
_01795
CCNA_01797: CCNA_01797 - FtsB-related septum formation initiator, at 1,923,489 to 1,923,791
_01797
CCNA_01799: CCNA_01799 - pyruvate dehydrogenase E1 component alpha subunit, at 1,923,957 to 1,924,988
_01799
Position (kb)
1921
1922
1923
1924 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1920.855 kb on - strand, within CCNA_01793 at 1920.887 kb on - strand at 1920.887 kb on - strand at 1920.921 kb on - strand at 1920.921 kb on - strand at 1920.942 kb on - strand at 1920.954 kb on + strand at 1920.989 kb on + strand at 1920.995 kb on + strand at 1920.997 kb on - strand at 1921.019 kb on - strand at 1921.025 kb on + strand at 1921.055 kb on - strand, within CCNA_01794 at 1921.084 kb on - strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.160 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.184 kb on - strand, within CCNA_01794 at 1921.228 kb on - strand, within CCNA_01794 at 1921.273 kb on + strand, within CCNA_01794 at 1921.281 kb on - strand, within CCNA_01794 at 1921.326 kb on - strand, within CCNA_01794 at 1921.335 kb on + strand, within CCNA_01794 at 1921.343 kb on - strand, within CCNA_01794 at 1921.343 kb on - strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.353 kb on - strand, within CCNA_01794 at 1921.353 kb on - strand, within CCNA_01794 at 1921.353 kb on - strand, within CCNA_01794 at 1921.392 kb on + strand, within CCNA_01794 at 1921.392 kb on + strand, within CCNA_01794 at 1921.397 kb on + strand, within CCNA_01794 at 1921.408 kb on + strand, within CCNA_01794 at 1921.463 kb on - strand, within CCNA_01794 at 1921.466 kb on + strand, within CCNA_01794 at 1921.466 kb on + strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.493 kb on - strand, within CCNA_01794 at 1921.537 kb on + strand, within CCNA_01794 at 1921.553 kb on + strand, within CCNA_01794 at 1921.579 kb on + strand, within CCNA_01794 at 1921.655 kb on + strand, within CCNA_01794 at 1921.670 kb on - strand at 1921.670 kb on - strand at 1921.670 kb on - strand at 1921.676 kb on - strand at 1921.758 kb on - strand at 1921.758 kb on - strand at 1921.783 kb on - strand at 1921.851 kb on + strand at 1921.859 kb on - strand at 1921.905 kb on + strand at 1921.965 kb on + strand at 1922.105 kb on + strand, within CCNA_01795 at 1922.285 kb on + strand, within CCNA_01795 at 1922.428 kb on + strand, within CCNA_01795 at 1922.436 kb on - strand, within CCNA_01795 at 1922.443 kb on + strand, within CCNA_01795 at 1922.542 kb on + strand, within CCNA_01795 at 1922.738 kb on + strand, within CCNA_01795 at 1922.808 kb on + strand, within CCNA_01795 at 1922.832 kb on + strand, within CCNA_01795 at 1922.835 kb on - strand, within CCNA_01795 at 1922.926 kb on + strand, within CCNA_01795 at 1922.934 kb on - strand, within CCNA_01795 at 1922.968 kb on - strand, within CCNA_01795 at 1922.985 kb on + strand, within CCNA_01795 at 1923.012 kb on + strand at 1923.049 kb on + strand at 1923.054 kb on + strand at 1923.108 kb on - strand at 1923.126 kb on - strand at 1923.145 kb on + strand at 1923.155 kb on + strand at 1923.190 kb on + strand at 1923.289 kb on + strand at 1923.312 kb on + strand at 1923.356 kb on - strand at 1923.406 kb on + strand at 1923.483 kb on + strand at 1923.758 kb on + strand, within CCNA_01797 at 1923.773 kb on + strand at 1923.773 kb on + strand at 1923.798 kb on - strand at 1923.821 kb on + strand at 1923.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,920,855 - CCNA_01793 0.90 -1.2 1,920,887 - -0.3 1,920,887 - -0.0 1,920,921 - -0.6 1,920,921 - -0.4 1,920,942 - -1.0 1,920,954 + -0.1 1,920,989 + +0.4 1,920,995 + -0.8 1,920,997 - +0.3 1,921,019 - +0.5 1,921,025 + +2.3 1,921,055 - CCNA_01794 0.11 -0.6 1,921,084 - CCNA_01794 0.15 -1.2 1,921,157 + CCNA_01794 0.24 +1.0 1,921,157 + CCNA_01794 0.24 -0.7 1,921,160 - CCNA_01794 0.25 -0.5 1,921,165 - CCNA_01794 0.25 +0.1 1,921,165 - CCNA_01794 0.25 +0.6 1,921,165 - CCNA_01794 0.25 +0.2 1,921,184 - CCNA_01794 0.28 -0.5 1,921,228 - CCNA_01794 0.33 +0.5 1,921,273 + CCNA_01794 0.39 -0.8 1,921,281 - CCNA_01794 0.40 +0.4 1,921,326 - CCNA_01794 0.46 +0.4 1,921,335 + CCNA_01794 0.47 -2.1 1,921,343 - CCNA_01794 0.48 +1.3 1,921,343 - CCNA_01794 0.48 -0.6 1,921,345 + CCNA_01794 0.49 +0.9 1,921,345 + CCNA_01794 0.49 -0.6 1,921,353 - CCNA_01794 0.50 +0.7 1,921,353 - CCNA_01794 0.50 -0.2 1,921,353 - CCNA_01794 0.50 -0.3 1,921,392 + CCNA_01794 0.55 -0.6 1,921,392 + CCNA_01794 0.55 -0.4 1,921,397 + CCNA_01794 0.55 -1.9 1,921,408 + CCNA_01794 0.57 -0.1 1,921,463 - CCNA_01794 0.64 +0.7 1,921,466 + CCNA_01794 0.64 -1.2 1,921,466 + CCNA_01794 0.64 -0.7 1,921,485 + CCNA_01794 0.67 -0.5 1,921,485 + CCNA_01794 0.67 -0.2 1,921,493 - CCNA_01794 0.68 -0.7 1,921,537 + CCNA_01794 0.73 -1.2 1,921,553 + CCNA_01794 0.75 +0.7 1,921,579 + CCNA_01794 0.79 +0.8 1,921,655 + CCNA_01794 0.89 -0.7 1,921,670 - -0.4 1,921,670 - +1.3 1,921,670 - -1.5 1,921,676 - -1.0 1,921,758 - -0.4 1,921,758 - +0.1 1,921,783 - +0.5 1,921,851 + +0.4 1,921,859 - -0.7 1,921,905 + -1.1 1,921,965 + -0.1 1,922,105 + CCNA_01795 0.20 -0.2 1,922,285 + CCNA_01795 0.34 -1.0 1,922,428 + CCNA_01795 0.45 +0.3 1,922,436 - CCNA_01795 0.45 +0.3 1,922,443 + CCNA_01795 0.46 -1.9 1,922,542 + CCNA_01795 0.54 +0.9 1,922,738 + CCNA_01795 0.69 -0.1 1,922,808 + CCNA_01795 0.74 -1.5 1,922,832 + CCNA_01795 0.76 +0.3 1,922,835 - CCNA_01795 0.77 +1.9 1,922,926 + CCNA_01795 0.84 +0.6 1,922,934 - CCNA_01795 0.84 +1.9 1,922,968 - CCNA_01795 0.87 +0.1 1,922,985 + CCNA_01795 0.88 -1.7 1,923,012 + +0.6 1,923,049 + -0.6 1,923,054 + -0.4 1,923,108 - +2.3 1,923,126 - +1.0 1,923,145 + +0.2 1,923,155 + +1.1 1,923,190 + -0.7 1,923,289 + -2.5 1,923,312 + +0.4 1,923,356 - -0.3 1,923,406 + +1.0 1,923,483 + +0.6 1,923,758 + CCNA_01797 0.89 -0.5 1,923,773 + +0.9 1,923,773 + +0.7 1,923,798 - -0.7 1,923,821 + -0.2 1,923,864 + -0.1
Or see this region's nucleotide sequence