Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01755 and CCNA_01756 are separated by 97 nucleotides CCNA_01756 and CCNA_01757 are separated by 63 nucleotides CCNA_01757 and CCNA_01758 are separated by 44 nucleotides
CCNA_01755: CCNA_01755 - two component sensor histidine kinase, at 1,881,785 to 1,883,437
_01755
CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654
_01756
CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548
_01757
CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594
_01758
Position (kb)
1883
1884
1885 Strain fitness (log2 ratio)
-2
-1
0
1 at 1882.722 kb on + strand, within CCNA_01755 at 1882.744 kb on - strand, within CCNA_01755 at 1882.791 kb on + strand, within CCNA_01755 at 1882.856 kb on + strand, within CCNA_01755 at 1882.867 kb on + strand, within CCNA_01755 at 1882.875 kb on - strand, within CCNA_01755 at 1882.885 kb on + strand, within CCNA_01755 at 1882.893 kb on - strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.928 kb on + strand, within CCNA_01755 at 1882.979 kb on + strand, within CCNA_01755 at 1883.022 kb on - strand, within CCNA_01755 at 1883.031 kb on + strand, within CCNA_01755 at 1883.044 kb on - strand, within CCNA_01755 at 1883.148 kb on + strand, within CCNA_01755 at 1883.192 kb on - strand, within CCNA_01755 at 1883.216 kb on - strand, within CCNA_01755 at 1883.230 kb on + strand, within CCNA_01755 at 1883.231 kb on + strand, within CCNA_01755 at 1883.234 kb on - strand, within CCNA_01755 at 1883.293 kb on - strand at 1883.303 kb on + strand at 1883.303 kb on - strand at 1883.321 kb on + strand at 1883.362 kb on + strand at 1883.377 kb on - strand at 1883.437 kb on + strand at 1883.445 kb on - strand at 1883.445 kb on - strand at 1883.464 kb on + strand at 1883.568 kb on + strand, within CCNA_01756 at 1883.568 kb on + strand, within CCNA_01756 at 1883.631 kb on + strand, within CCNA_01756 at 1883.634 kb on - strand, within CCNA_01756 at 1883.639 kb on - strand, within CCNA_01756 at 1883.644 kb on - strand at 1883.686 kb on - strand at 1883.707 kb on + strand at 1883.753 kb on + strand at 1883.753 kb on + strand at 1883.761 kb on - strand at 1883.840 kb on - strand, within CCNA_01757 at 1883.963 kb on + strand, within CCNA_01757 at 1884.003 kb on + strand, within CCNA_01757 at 1884.021 kb on - strand, within CCNA_01757 at 1884.021 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.138 kb on - strand, within CCNA_01757 at 1884.178 kb on + strand, within CCNA_01757 at 1884.178 kb on + strand, within CCNA_01757 at 1884.366 kb on + strand, within CCNA_01757 at 1884.393 kb on - strand, within CCNA_01757 at 1884.456 kb on - strand, within CCNA_01757 at 1884.471 kb on - strand at 1884.486 kb on - strand at 1884.499 kb on - strand at 1884.542 kb on + strand at 1884.550 kb on - strand at 1884.550 kb on - strand at 1884.556 kb on + strand at 1884.556 kb on + strand at 1884.573 kb on - strand at 1884.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,882,722 + CCNA_01755 0.57 -0.3 1,882,744 - CCNA_01755 0.58 +0.4 1,882,791 + CCNA_01755 0.61 +0.3 1,882,856 + CCNA_01755 0.65 -0.4 1,882,867 + CCNA_01755 0.65 -0.1 1,882,875 - CCNA_01755 0.66 -0.0 1,882,885 + CCNA_01755 0.67 -0.3 1,882,893 - CCNA_01755 0.67 +0.6 1,882,911 + CCNA_01755 0.68 +0.0 1,882,911 + CCNA_01755 0.68 +0.3 1,882,928 + CCNA_01755 0.69 -0.5 1,882,979 + CCNA_01755 0.72 +0.4 1,883,022 - CCNA_01755 0.75 -0.1 1,883,031 + CCNA_01755 0.75 -0.5 1,883,044 - CCNA_01755 0.76 +0.3 1,883,148 + CCNA_01755 0.82 -0.0 1,883,192 - CCNA_01755 0.85 +0.2 1,883,216 - CCNA_01755 0.87 +1.0 1,883,230 + CCNA_01755 0.87 -0.2 1,883,231 + CCNA_01755 0.87 +0.6 1,883,234 - CCNA_01755 0.88 -0.4 1,883,293 - +0.5 1,883,303 + +0.5 1,883,303 - +0.6 1,883,321 + -0.4 1,883,362 + +0.5 1,883,377 - -0.6 1,883,437 + -1.6 1,883,445 - +0.8 1,883,445 - -0.9 1,883,464 + -0.7 1,883,568 + CCNA_01756 0.28 +0.6 1,883,568 + CCNA_01756 0.28 -0.1 1,883,631 + CCNA_01756 0.80 +0.7 1,883,634 - CCNA_01756 0.82 +0.6 1,883,639 - CCNA_01756 0.87 +0.1 1,883,644 - +0.3 1,883,686 - +0.1 1,883,707 + -1.9 1,883,753 + +0.2 1,883,753 + +0.8 1,883,761 - -0.3 1,883,840 - CCNA_01757 0.15 -0.6 1,883,963 + CCNA_01757 0.29 +0.1 1,884,003 + CCNA_01757 0.34 -1.3 1,884,021 - CCNA_01757 0.36 -0.8 1,884,021 - CCNA_01757 0.36 -1.4 1,884,037 - CCNA_01757 0.38 +0.4 1,884,037 - CCNA_01757 0.38 -0.8 1,884,138 - CCNA_01757 0.51 -0.4 1,884,178 + CCNA_01757 0.55 +0.9 1,884,178 + CCNA_01757 0.55 -0.7 1,884,366 + CCNA_01757 0.78 -0.4 1,884,393 - CCNA_01757 0.81 -0.2 1,884,456 - CCNA_01757 0.89 +0.0 1,884,471 - +0.6 1,884,486 - -0.6 1,884,499 - -0.0 1,884,542 + +0.2 1,884,550 - +0.6 1,884,550 - +0.5 1,884,556 + +0.6 1,884,556 + +1.0 1,884,573 - -0.6 1,884,590 + -0.5
Or see this region's nucleotide sequence