Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01738 and CCNA_01739 are separated by 204 nucleotides CCNA_01739 and CCNA_01740 are separated by 13 nucleotides CCNA_01740 and CCNA_01741 are separated by 14 nucleotides CCNA_01741 and CCNA_01742 are separated by 268 nucleotides
CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063
_01738
CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852
_01739
CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144
_01740
CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539
_01741
CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467
_01742
Position (kb)
1869
1870 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1868.275 kb on - strand, within CCNA_01738 at 1868.301 kb on + strand, within CCNA_01738 at 1868.303 kb on - strand, within CCNA_01738 at 1868.414 kb on + strand, within CCNA_01738 at 1868.427 kb on - strand, within CCNA_01738 at 1868.497 kb on - strand, within CCNA_01738 at 1868.552 kb on - strand, within CCNA_01738 at 1868.571 kb on + strand, within CCNA_01738 at 1868.571 kb on + strand, within CCNA_01738 at 1868.578 kb on + strand, within CCNA_01738 at 1868.620 kb on + strand, within CCNA_01738 at 1868.632 kb on + strand, within CCNA_01738 at 1868.687 kb on + strand, within CCNA_01738 at 1868.692 kb on + strand, within CCNA_01738 at 1868.692 kb on + strand, within CCNA_01738 at 1868.692 kb on + strand, within CCNA_01738 at 1868.700 kb on - strand, within CCNA_01738 at 1868.707 kb on - strand, within CCNA_01738 at 1868.728 kb on - strand, within CCNA_01738 at 1868.728 kb on - strand, within CCNA_01738 at 1868.728 kb on - strand, within CCNA_01738 at 1868.758 kb on + strand, within CCNA_01738 at 1868.776 kb on + strand, within CCNA_01738 at 1868.841 kb on - strand at 1868.847 kb on + strand at 1868.853 kb on + strand at 1868.872 kb on + strand at 1868.875 kb on - strand at 1868.880 kb on + strand at 1868.880 kb on - strand at 1868.880 kb on - strand at 1868.903 kb on - strand at 1868.904 kb on + strand at 1868.922 kb on - strand at 1868.950 kb on + strand at 1868.979 kb on - strand at 1869.000 kb on - strand at 1869.001 kb on - strand at 1869.012 kb on - strand at 1869.017 kb on + strand at 1869.050 kb on + strand at 1869.064 kb on + strand at 1869.065 kb on + strand at 1869.072 kb on - strand at 1869.113 kb on + strand at 1869.121 kb on - strand at 1869.126 kb on - strand at 1869.190 kb on + strand at 1869.265 kb on + strand at 1869.265 kb on + strand at 1869.265 kb on + strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.319 kb on + strand at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.327 kb on - strand, within CCNA_01739 at 1869.409 kb on - strand, within CCNA_01739 at 1869.437 kb on - strand, within CCNA_01739 at 1869.603 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.678 kb on - strand, within CCNA_01739 at 1869.739 kb on - strand, within CCNA_01739 at 1869.748 kb on - strand, within CCNA_01739 at 1869.760 kb on - strand, within CCNA_01739 at 1870.749 kb on + strand at 1870.757 kb on - strand at 1870.757 kb on - strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.825 kb on + strand at 1870.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,868,275 - CCNA_01738 0.68 -0.2 1,868,301 + CCNA_01738 0.69 +0.8 1,868,303 - CCNA_01738 0.69 -0.8 1,868,414 + CCNA_01738 0.73 -0.4 1,868,427 - CCNA_01738 0.74 +0.2 1,868,497 - CCNA_01738 0.77 +0.3 1,868,552 - CCNA_01738 0.79 -0.2 1,868,571 + CCNA_01738 0.80 +2.6 1,868,571 + CCNA_01738 0.80 +0.2 1,868,578 + CCNA_01738 0.80 -0.3 1,868,620 + CCNA_01738 0.82 -0.9 1,868,632 + CCNA_01738 0.82 +0.8 1,868,687 + CCNA_01738 0.84 +0.7 1,868,692 + CCNA_01738 0.85 -0.5 1,868,692 + CCNA_01738 0.85 +0.5 1,868,692 + CCNA_01738 0.85 +0.2 1,868,700 - CCNA_01738 0.85 +0.7 1,868,707 - CCNA_01738 0.85 -1.0 1,868,728 - CCNA_01738 0.86 -0.7 1,868,728 - CCNA_01738 0.86 +0.2 1,868,728 - CCNA_01738 0.86 -0.3 1,868,758 + CCNA_01738 0.87 +0.8 1,868,776 + CCNA_01738 0.88 +0.1 1,868,841 - +0.4 1,868,847 + +0.8 1,868,853 + +0.1 1,868,872 + +0.4 1,868,875 - +1.3 1,868,880 + -0.3 1,868,880 - +0.3 1,868,880 - -0.1 1,868,903 - +0.1 1,868,904 + -0.3 1,868,922 - +0.2 1,868,950 + -0.3 1,868,979 - +0.3 1,869,000 - +0.8 1,869,001 - +0.4 1,869,012 - +0.2 1,869,017 + -0.7 1,869,050 + +0.9 1,869,064 + -1.6 1,869,065 + -0.0 1,869,072 - -1.2 1,869,113 + -0.4 1,869,121 - +0.2 1,869,126 - +0.1 1,869,190 + +1.1 1,869,265 + +1.2 1,869,265 + +1.9 1,869,265 + -1.1 1,869,273 - +0.2 1,869,273 - +0.2 1,869,273 - +0.5 1,869,319 + -0.2 1,869,327 - CCNA_01739 0.10 +0.5 1,869,327 - CCNA_01739 0.10 +0.3 1,869,327 - CCNA_01739 0.10 -0.6 1,869,327 - CCNA_01739 0.10 -0.1 1,869,327 - CCNA_01739 0.10 +0.5 1,869,409 - CCNA_01739 0.24 +0.3 1,869,437 - CCNA_01739 0.29 -0.1 1,869,603 - CCNA_01739 0.57 +0.8 1,869,642 - CCNA_01739 0.64 +0.3 1,869,678 - CCNA_01739 0.70 -1.6 1,869,739 - CCNA_01739 0.81 +0.0 1,869,748 - CCNA_01739 0.82 -0.8 1,869,760 - CCNA_01739 0.84 +0.6 1,870,749 + -2.8 1,870,757 - -0.1 1,870,757 - -0.4 1,870,778 + +0.1 1,870,778 + +0.3 1,870,778 + -0.7 1,870,825 + +0.3 1,870,826 - -0.6
Or see this region's nucleotide sequence