Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01730 and CCNA_01731 overlap by 4 nucleotides CCNA_01731 and CCNA_01732 overlap by 4 nucleotides CCNA_01732 and CCNA_01733 are separated by 73 nucleotides
CCNA_01730: CCNA_01730 - amidophosphoribosyltransferase, at 1,858,257 to 1,859,759
_01730
CCNA_01731: CCNA_01731 - colicin V production protein CvpA, at 1,859,756 to 1,860,373
_01731
CCNA_01732: CCNA_01732 - DNA repair protein RadA, at 1,860,370 to 1,861,752
_01732
CCNA_01733: CCNA_01733 - alanine racemase, at 1,861,826 to 1,862,920
_01733
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1859.513 kb on + strand, within CCNA_01730 at 1859.549 kb on - strand, within CCNA_01730 at 1859.551 kb on + strand, within CCNA_01730 at 1859.559 kb on - strand, within CCNA_01730 at 1859.591 kb on + strand, within CCNA_01730 at 1859.604 kb on + strand, within CCNA_01730 at 1859.612 kb on - strand at 1859.644 kb on + strand at 1859.733 kb on - strand at 1859.852 kb on + strand, within CCNA_01731 at 1859.852 kb on + strand, within CCNA_01731 at 1859.860 kb on - strand, within CCNA_01731 at 1859.898 kb on + strand, within CCNA_01731 at 1859.900 kb on - strand, within CCNA_01731 at 1859.966 kb on + strand, within CCNA_01731 at 1859.968 kb on + strand, within CCNA_01731 at 1859.974 kb on - strand, within CCNA_01731 at 1860.050 kb on + strand, within CCNA_01731 at 1860.063 kb on - strand, within CCNA_01731 at 1860.196 kb on + strand, within CCNA_01731 at 1860.249 kb on - strand, within CCNA_01731 at 1860.256 kb on - strand, within CCNA_01731 at 1860.365 kb on - strand at 1860.373 kb on + strand at 1860.373 kb on + strand at 1860.373 kb on + strand at 1860.380 kb on - strand at 1860.493 kb on + strand at 1860.690 kb on + strand, within CCNA_01732 at 1860.939 kb on + strand, within CCNA_01732 at 1861.224 kb on - strand, within CCNA_01732 at 1861.322 kb on + strand, within CCNA_01732 at 1861.440 kb on + strand, within CCNA_01732 at 1861.448 kb on - strand, within CCNA_01732 at 1861.610 kb on + strand, within CCNA_01732 at 1861.681 kb on + strand at 1861.707 kb on - strand at 1861.726 kb on + strand at 1861.771 kb on + strand at 1861.796 kb on - strand at 1861.823 kb on + strand at 1861.823 kb on + strand at 1861.831 kb on - strand at 1861.831 kb on - strand at 1861.836 kb on - strand at 1861.857 kb on - strand at 1861.864 kb on + strand at 1861.882 kb on - strand at 1861.883 kb on + strand at 1861.935 kb on + strand at 1861.935 kb on + strand at 1861.938 kb on - strand, within CCNA_01733 at 1862.026 kb on - strand, within CCNA_01733 at 1862.173 kb on + strand, within CCNA_01733 at 1862.253 kb on + strand, within CCNA_01733 at 1862.255 kb on + strand, within CCNA_01733 at 1862.274 kb on + strand, within CCNA_01733 at 1862.287 kb on - strand, within CCNA_01733 at 1862.399 kb on - strand, within CCNA_01733 at 1862.418 kb on + strand, within CCNA_01733 at 1862.423 kb on + strand, within CCNA_01733 at 1862.423 kb on + strand, within CCNA_01733 at 1862.431 kb on - strand, within CCNA_01733 at 1862.431 kb on - strand, within CCNA_01733 at 1862.431 kb on - strand, within CCNA_01733 at 1862.475 kb on - strand, within CCNA_01733 at 1862.496 kb on - strand, within CCNA_01733 at 1862.509 kb on + strand, within CCNA_01733 at 1862.509 kb on + strand, within CCNA_01733 at 1862.537 kb on + strand, within CCNA_01733 at 1862.537 kb on + strand, within CCNA_01733 at 1862.537 kb on + strand, within CCNA_01733 at 1862.545 kb on - strand, within CCNA_01733 at 1862.562 kb on + strand, within CCNA_01733 at 1862.583 kb on + strand, within CCNA_01733 at 1862.585 kb on - strand, within CCNA_01733 at 1862.591 kb on - strand, within CCNA_01733 at 1862.597 kb on - strand, within CCNA_01733 at 1862.621 kb on - strand, within CCNA_01733 at 1862.628 kb on + strand, within CCNA_01733 at 1862.663 kb on + strand, within CCNA_01733 at 1862.705 kb on + strand, within CCNA_01733 at 1862.710 kb on + strand, within CCNA_01733 at 1862.710 kb on + strand, within CCNA_01733 at 1862.713 kb on - strand, within CCNA_01733 at 1862.713 kb on - strand, within CCNA_01733 at 1862.726 kb on - strand, within CCNA_01733
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,859,513 + CCNA_01730 0.84 -0.2 1,859,549 - CCNA_01730 0.86 +0.6 1,859,551 + CCNA_01730 0.86 +2.6 1,859,559 - CCNA_01730 0.87 -1.2 1,859,591 + CCNA_01730 0.89 -1.9 1,859,604 + CCNA_01730 0.90 -1.0 1,859,612 - -0.8 1,859,644 + -0.8 1,859,733 - +0.2 1,859,852 + CCNA_01731 0.16 +2.1 1,859,852 + CCNA_01731 0.16 +0.9 1,859,860 - CCNA_01731 0.17 +0.7 1,859,898 + CCNA_01731 0.23 -0.4 1,859,900 - CCNA_01731 0.23 +0.9 1,859,966 + CCNA_01731 0.34 +0.1 1,859,968 + CCNA_01731 0.34 +0.9 1,859,974 - CCNA_01731 0.35 -1.3 1,860,050 + CCNA_01731 0.48 -0.4 1,860,063 - CCNA_01731 0.50 +1.3 1,860,196 + CCNA_01731 0.71 +0.1 1,860,249 - CCNA_01731 0.80 -0.3 1,860,256 - CCNA_01731 0.81 +0.6 1,860,365 - -0.0 1,860,373 + -0.4 1,860,373 + -1.1 1,860,373 + +0.6 1,860,380 - +0.2 1,860,493 + +1.3 1,860,690 + CCNA_01732 0.23 -1.1 1,860,939 + CCNA_01732 0.41 +0.9 1,861,224 - CCNA_01732 0.62 -1.3 1,861,322 + CCNA_01732 0.69 -0.4 1,861,440 + CCNA_01732 0.77 -0.0 1,861,448 - CCNA_01732 0.78 +0.2 1,861,610 + CCNA_01732 0.90 -1.5 1,861,681 + +0.3 1,861,707 - -0.3 1,861,726 + -1.0 1,861,771 + +1.0 1,861,796 - +0.7 1,861,823 + +0.5 1,861,823 + -0.1 1,861,831 - +2.6 1,861,831 - +0.9 1,861,836 - +0.2 1,861,857 - +0.0 1,861,864 + +1.0 1,861,882 - +0.8 1,861,883 + +1.1 1,861,935 + +1.6 1,861,935 + -0.3 1,861,938 - CCNA_01733 0.10 -0.6 1,862,026 - CCNA_01733 0.18 -0.5 1,862,173 + CCNA_01733 0.32 -0.5 1,862,253 + CCNA_01733 0.39 -0.0 1,862,255 + CCNA_01733 0.39 +0.7 1,862,274 + CCNA_01733 0.41 +0.0 1,862,287 - CCNA_01733 0.42 +0.6 1,862,399 - CCNA_01733 0.52 -0.3 1,862,418 + CCNA_01733 0.54 -0.1 1,862,423 + CCNA_01733 0.55 -0.3 1,862,423 + CCNA_01733 0.55 +0.3 1,862,431 - CCNA_01733 0.55 -0.8 1,862,431 - CCNA_01733 0.55 -0.1 1,862,431 - CCNA_01733 0.55 -0.9 1,862,475 - CCNA_01733 0.59 +1.3 1,862,496 - CCNA_01733 0.61 +0.9 1,862,509 + CCNA_01733 0.62 +1.0 1,862,509 + CCNA_01733 0.62 -0.9 1,862,537 + CCNA_01733 0.65 +0.8 1,862,537 + CCNA_01733 0.65 +0.1 1,862,537 + CCNA_01733 0.65 +1.7 1,862,545 - CCNA_01733 0.66 +0.3 1,862,562 + CCNA_01733 0.67 +1.1 1,862,583 + CCNA_01733 0.69 +0.0 1,862,585 - CCNA_01733 0.69 +0.7 1,862,591 - CCNA_01733 0.70 -0.2 1,862,597 - CCNA_01733 0.70 +0.4 1,862,621 - CCNA_01733 0.73 -0.1 1,862,628 + CCNA_01733 0.73 -0.0 1,862,663 + CCNA_01733 0.76 +0.8 1,862,705 + CCNA_01733 0.80 -0.0 1,862,710 + CCNA_01733 0.81 +2.5 1,862,710 + CCNA_01733 0.81 -0.9 1,862,713 - CCNA_01733 0.81 +0.1 1,862,713 - CCNA_01733 0.81 +0.4 1,862,726 - CCNA_01733 0.82 -0.7
Or see this region's nucleotide sequence