Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01692 and CCNA_01693 are separated by 127 nucleotides CCNA_01693 and CCNA_01694 are separated by 13 nucleotides
CCNA_01692: CCNA_01692 - GMP synthase GuaA, at 1,819,124 to 1,820,686
_01692
CCNA_01693: CCNA_01693 - LysR-family transcriptional regulator, at 1,820,814 to 1,821,710
_01693
CCNA_01694: CCNA_01694 - CocE/NonD family hydrolase, at 1,821,724 to 1,823,658
_01694
Position (kb)
1820
1821
1822 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1819.868 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1820.121 kb on + strand, within CCNA_01692 at 1820.245 kb on + strand, within CCNA_01692 at 1820.410 kb on + strand, within CCNA_01692 at 1820.736 kb on - strand at 1820.803 kb on + strand at 1820.903 kb on - strand at 1820.972 kb on - strand, within CCNA_01693 at 1821.159 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.291 kb on - strand, within CCNA_01693 at 1821.304 kb on + strand, within CCNA_01693 at 1821.319 kb on + strand, within CCNA_01693 at 1821.322 kb on - strand, within CCNA_01693 at 1821.389 kb on - strand, within CCNA_01693 at 1821.398 kb on + strand, within CCNA_01693 at 1821.421 kb on + strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.501 kb on + strand, within CCNA_01693 at 1821.514 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.566 kb on + strand, within CCNA_01693 at 1821.574 kb on - strand, within CCNA_01693 at 1821.616 kb on + strand, within CCNA_01693 at 1821.621 kb on + strand at 1821.621 kb on + strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.665 kb on + strand at 1821.666 kb on - strand at 1821.682 kb on + strand at 1821.682 kb on - strand at 1821.683 kb on + strand at 1821.704 kb on + strand at 1821.816 kb on - strand at 1821.825 kb on + strand at 1821.893 kb on + strand at 1821.941 kb on - strand, within CCNA_01694 at 1822.026 kb on - strand, within CCNA_01694 at 1822.026 kb on - strand, within CCNA_01694 at 1822.026 kb on - strand, within CCNA_01694 at 1822.071 kb on + strand, within CCNA_01694 at 1822.089 kb on + strand, within CCNA_01694 at 1822.098 kb on + strand, within CCNA_01694 at 1822.098 kb on + strand, within CCNA_01694 at 1822.205 kb on + strand, within CCNA_01694 at 1822.222 kb on + strand, within CCNA_01694 at 1822.237 kb on - strand, within CCNA_01694 at 1822.238 kb on + strand, within CCNA_01694 at 1822.238 kb on + strand, within CCNA_01694 at 1822.248 kb on + strand, within CCNA_01694 at 1822.248 kb on + strand, within CCNA_01694 at 1822.256 kb on + strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.256 kb on - strand, within CCNA_01694 at 1822.264 kb on - strand, within CCNA_01694 at 1822.308 kb on + strand, within CCNA_01694 at 1822.311 kb on - strand, within CCNA_01694 at 1822.315 kb on + strand, within CCNA_01694 at 1822.316 kb on - strand, within CCNA_01694 at 1822.378 kb on - strand, within CCNA_01694 at 1822.378 kb on - strand, within CCNA_01694 at 1822.488 kb on + strand, within CCNA_01694 at 1822.548 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.553 kb on + strand, within CCNA_01694 at 1822.561 kb on - strand, within CCNA_01694 at 1822.561 kb on - strand, within CCNA_01694 at 1822.561 kb on - strand, within CCNA_01694 at 1822.592 kb on + strand, within CCNA_01694 at 1822.600 kb on - strand, within CCNA_01694 at 1822.600 kb on - strand, within CCNA_01694 at 1822.618 kb on - strand, within CCNA_01694 at 1822.626 kb on + strand, within CCNA_01694 at 1822.664 kb on - strand, within CCNA_01694 at 1822.687 kb on - strand, within CCNA_01694
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,819,868 + CCNA_01692 0.48 +0.1 1,819,948 + CCNA_01692 0.53 +0.5 1,819,948 + CCNA_01692 0.53 -0.2 1,820,121 + CCNA_01692 0.64 +0.1 1,820,245 + CCNA_01692 0.72 -0.2 1,820,410 + CCNA_01692 0.82 +0.5 1,820,736 - -1.5 1,820,803 + +0.5 1,820,903 - +1.3 1,820,972 - CCNA_01693 0.18 -1.4 1,821,159 + CCNA_01693 0.38 -0.6 1,821,283 + CCNA_01693 0.52 -1.7 1,821,283 + CCNA_01693 0.52 +1.2 1,821,291 - CCNA_01693 0.53 -0.8 1,821,304 + CCNA_01693 0.55 +0.1 1,821,319 + CCNA_01693 0.56 -0.3 1,821,322 - CCNA_01693 0.57 -1.0 1,821,389 - CCNA_01693 0.64 -0.7 1,821,398 + CCNA_01693 0.65 +0.6 1,821,421 + CCNA_01693 0.68 +0.4 1,821,429 - CCNA_01693 0.69 -1.1 1,821,436 + CCNA_01693 0.69 -0.2 1,821,436 + CCNA_01693 0.69 -0.6 1,821,501 + CCNA_01693 0.77 -1.0 1,821,514 - CCNA_01693 0.78 -0.5 1,821,543 - CCNA_01693 0.81 +1.2 1,821,543 - CCNA_01693 0.81 +0.1 1,821,556 + CCNA_01693 0.83 +0.3 1,821,556 + CCNA_01693 0.83 +0.1 1,821,564 - CCNA_01693 0.84 -0.2 1,821,564 - CCNA_01693 0.84 +1.0 1,821,566 + CCNA_01693 0.84 +0.2 1,821,574 - CCNA_01693 0.85 +1.6 1,821,616 + CCNA_01693 0.89 -0.2 1,821,621 + -0.2 1,821,621 + -0.1 1,821,629 - -0.3 1,821,629 - -0.5 1,821,629 - -0.7 1,821,665 + -1.7 1,821,666 - -0.3 1,821,682 + -0.5 1,821,682 - -0.6 1,821,683 + +0.2 1,821,704 + -1.0 1,821,816 - -3.2 1,821,825 + +0.3 1,821,893 + -0.8 1,821,941 - CCNA_01694 0.11 +1.7 1,822,026 - CCNA_01694 0.16 -2.1 1,822,026 - CCNA_01694 0.16 -0.6 1,822,026 - CCNA_01694 0.16 -0.3 1,822,071 + CCNA_01694 0.18 +0.5 1,822,089 + CCNA_01694 0.19 -0.2 1,822,098 + CCNA_01694 0.19 +0.1 1,822,098 + CCNA_01694 0.19 -0.9 1,822,205 + CCNA_01694 0.25 -1.1 1,822,222 + CCNA_01694 0.26 -0.1 1,822,237 - CCNA_01694 0.27 +0.3 1,822,238 + CCNA_01694 0.27 -0.1 1,822,238 + CCNA_01694 0.27 -0.2 1,822,248 + CCNA_01694 0.27 -0.7 1,822,248 + CCNA_01694 0.27 +0.2 1,822,256 + CCNA_01694 0.27 -0.3 1,822,256 - CCNA_01694 0.27 -0.9 1,822,256 - CCNA_01694 0.27 +0.1 1,822,256 - CCNA_01694 0.27 -1.9 1,822,256 - CCNA_01694 0.27 +0.0 1,822,256 - CCNA_01694 0.27 -1.2 1,822,264 - CCNA_01694 0.28 -0.4 1,822,308 + CCNA_01694 0.30 +1.3 1,822,311 - CCNA_01694 0.30 +0.2 1,822,315 + CCNA_01694 0.31 +0.1 1,822,316 - CCNA_01694 0.31 +0.2 1,822,378 - CCNA_01694 0.34 -0.1 1,822,378 - CCNA_01694 0.34 +1.0 1,822,488 + CCNA_01694 0.39 +0.8 1,822,548 + CCNA_01694 0.43 +0.5 1,822,553 + CCNA_01694 0.43 +0.1 1,822,553 + CCNA_01694 0.43 +0.0 1,822,553 + CCNA_01694 0.43 -2.2 1,822,553 + CCNA_01694 0.43 -0.9 1,822,561 - CCNA_01694 0.43 -0.5 1,822,561 - CCNA_01694 0.43 +0.6 1,822,561 - CCNA_01694 0.43 +0.8 1,822,592 + CCNA_01694 0.45 -0.9 1,822,600 - CCNA_01694 0.45 +0.2 1,822,600 - CCNA_01694 0.45 +0.3 1,822,618 - CCNA_01694 0.46 +0.4 1,822,626 + CCNA_01694 0.47 -1.5 1,822,664 - CCNA_01694 0.49 +0.5 1,822,687 - CCNA_01694 0.50 -0.5
Or see this region's nucleotide sequence