Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01691 and CCNA_01692 are separated by 32 nucleotides CCNA_01692 and CCNA_01693 are separated by 127 nucleotides
CCNA_01691: CCNA_01691 - tRNA/rRNA methyltransferase, at 1,817,814 to 1,819,091
_01691
CCNA_01692: CCNA_01692 - GMP synthase GuaA, at 1,819,124 to 1,820,686
_01692
CCNA_01693: CCNA_01693 - LysR-family transcriptional regulator, at 1,820,814 to 1,821,710
_01693
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-1
0
1 at 1818.163 kb on - strand, within CCNA_01691 at 1818.199 kb on + strand, within CCNA_01691 at 1818.260 kb on + strand, within CCNA_01691 at 1818.264 kb on - strand, within CCNA_01691 at 1818.287 kb on + strand, within CCNA_01691 at 1818.310 kb on - strand, within CCNA_01691 at 1818.327 kb on - strand, within CCNA_01691 at 1818.426 kb on + strand, within CCNA_01691 at 1818.437 kb on + strand, within CCNA_01691 at 1818.448 kb on + strand, within CCNA_01691 at 1818.514 kb on - strand, within CCNA_01691 at 1818.550 kb on + strand, within CCNA_01691 at 1818.620 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.701 kb on - strand, within CCNA_01691 at 1818.702 kb on + strand, within CCNA_01691 at 1818.740 kb on + strand, within CCNA_01691 at 1818.815 kb on + strand, within CCNA_01691 at 1818.885 kb on + strand, within CCNA_01691 at 1818.961 kb on + strand, within CCNA_01691 at 1818.983 kb on - strand at 1819.070 kb on - strand at 1819.107 kb on - strand at 1819.109 kb on + strand at 1819.120 kb on + strand at 1819.259 kb on + strand at 1819.267 kb on - strand at 1819.421 kb on + strand, within CCNA_01692 at 1819.566 kb on + strand, within CCNA_01692 at 1819.788 kb on - strand, within CCNA_01692 at 1819.868 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1819.948 kb on + strand, within CCNA_01692 at 1820.121 kb on + strand, within CCNA_01692 at 1820.245 kb on + strand, within CCNA_01692 at 1820.410 kb on + strand, within CCNA_01692 at 1820.736 kb on - strand at 1820.803 kb on + strand at 1820.903 kb on - strand at 1820.972 kb on - strand, within CCNA_01693 at 1821.159 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.283 kb on + strand, within CCNA_01693 at 1821.291 kb on - strand, within CCNA_01693 at 1821.304 kb on + strand, within CCNA_01693 at 1821.319 kb on + strand, within CCNA_01693 at 1821.322 kb on - strand, within CCNA_01693 at 1821.389 kb on - strand, within CCNA_01693 at 1821.398 kb on + strand, within CCNA_01693 at 1821.421 kb on + strand, within CCNA_01693 at 1821.429 kb on - strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.436 kb on + strand, within CCNA_01693 at 1821.501 kb on + strand, within CCNA_01693 at 1821.514 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.543 kb on - strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.556 kb on + strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.564 kb on - strand, within CCNA_01693 at 1821.566 kb on + strand, within CCNA_01693 at 1821.574 kb on - strand, within CCNA_01693 at 1821.616 kb on + strand, within CCNA_01693 at 1821.621 kb on + strand at 1821.621 kb on + strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.629 kb on - strand at 1821.665 kb on + strand at 1821.666 kb on - strand at 1821.682 kb on + strand at 1821.682 kb on - strand at 1821.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,818,163 - CCNA_01691 0.27 -1.1 1,818,199 + CCNA_01691 0.30 +0.6 1,818,260 + CCNA_01691 0.35 +0.8 1,818,264 - CCNA_01691 0.35 +0.7 1,818,287 + CCNA_01691 0.37 -0.1 1,818,310 - CCNA_01691 0.39 -1.0 1,818,327 - CCNA_01691 0.40 -1.2 1,818,426 + CCNA_01691 0.48 +0.4 1,818,437 + CCNA_01691 0.49 +1.2 1,818,448 + CCNA_01691 0.50 +0.3 1,818,514 - CCNA_01691 0.55 -1.4 1,818,550 + CCNA_01691 0.58 -0.1 1,818,620 + CCNA_01691 0.63 +0.8 1,818,693 + CCNA_01691 0.69 -0.1 1,818,693 + CCNA_01691 0.69 +0.4 1,818,693 + CCNA_01691 0.69 +0.3 1,818,701 - CCNA_01691 0.69 +1.6 1,818,702 + CCNA_01691 0.69 +0.2 1,818,740 + CCNA_01691 0.72 -0.2 1,818,815 + CCNA_01691 0.78 -0.3 1,818,885 + CCNA_01691 0.84 -0.5 1,818,961 + CCNA_01691 0.90 +0.3 1,818,983 - -1.7 1,819,070 - +0.3 1,819,107 - -0.5 1,819,109 + +0.8 1,819,120 + +0.4 1,819,259 + +1.1 1,819,267 - +0.0 1,819,421 + CCNA_01692 0.19 -0.9 1,819,566 + CCNA_01692 0.28 -0.3 1,819,788 - CCNA_01692 0.42 -1.2 1,819,868 + CCNA_01692 0.48 +0.1 1,819,948 + CCNA_01692 0.53 +0.5 1,819,948 + CCNA_01692 0.53 -0.2 1,820,121 + CCNA_01692 0.64 +0.1 1,820,245 + CCNA_01692 0.72 -0.2 1,820,410 + CCNA_01692 0.82 +0.5 1,820,736 - -1.5 1,820,803 + +0.5 1,820,903 - +1.3 1,820,972 - CCNA_01693 0.18 -1.4 1,821,159 + CCNA_01693 0.38 -0.6 1,821,283 + CCNA_01693 0.52 -1.7 1,821,283 + CCNA_01693 0.52 +1.2 1,821,291 - CCNA_01693 0.53 -0.8 1,821,304 + CCNA_01693 0.55 +0.1 1,821,319 + CCNA_01693 0.56 -0.3 1,821,322 - CCNA_01693 0.57 -1.0 1,821,389 - CCNA_01693 0.64 -0.7 1,821,398 + CCNA_01693 0.65 +0.6 1,821,421 + CCNA_01693 0.68 +0.4 1,821,429 - CCNA_01693 0.69 -1.1 1,821,436 + CCNA_01693 0.69 -0.2 1,821,436 + CCNA_01693 0.69 -0.6 1,821,501 + CCNA_01693 0.77 -1.0 1,821,514 - CCNA_01693 0.78 -0.5 1,821,543 - CCNA_01693 0.81 +1.2 1,821,543 - CCNA_01693 0.81 +0.1 1,821,556 + CCNA_01693 0.83 +0.3 1,821,556 + CCNA_01693 0.83 +0.1 1,821,564 - CCNA_01693 0.84 -0.2 1,821,564 - CCNA_01693 0.84 +1.0 1,821,566 + CCNA_01693 0.84 +0.2 1,821,574 - CCNA_01693 0.85 +1.6 1,821,616 + CCNA_01693 0.89 -0.2 1,821,621 + -0.2 1,821,621 + -0.1 1,821,629 - -0.3 1,821,629 - -0.5 1,821,629 - -0.7 1,821,665 + -1.7 1,821,666 - -0.3 1,821,682 + -0.5 1,821,682 - -0.6 1,821,683 + +0.2
Or see this region's nucleotide sequence