Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01675 and CCNA_01676 are separated by 71 nucleotides CCNA_01676 and CCNA_01677 are separated by 101 nucleotides
CCNA_01675: CCNA_01675 - outer membrane protein, at 1,797,735 to 1,799,519
_01675
CCNA_01676: CCNA_01676 - hypothetical protein, at 1,799,591 to 1,803,712
_01676
CCNA_01677: CCNA_01677 - carboxypeptidase G2 precursor, at 1,803,814 to 1,805,058
_01677
Position (kb)
1799
1800
1801
1802
1803
1804 Strain fitness (log2 ratio)
-1
0
1 at 1799.096 kb on + strand, within CCNA_01675 at 1799.096 kb on + strand, within CCNA_01675 at 1799.530 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.538 kb on - strand at 1799.538 kb on - strand at 1799.622 kb on + strand at 1799.632 kb on + strand at 1799.640 kb on - strand at 1799.985 kb on - strand at 1801.147 kb on + strand, within CCNA_01676 at 1801.345 kb on + strand, within CCNA_01676 at 1801.666 kb on + strand, within CCNA_01676 at 1801.815 kb on + strand, within CCNA_01676 at 1802.122 kb on + strand, within CCNA_01676 at 1802.483 kb on + strand, within CCNA_01676 at 1803.000 kb on + strand, within CCNA_01676 at 1803.781 kb on + strand at 1803.824 kb on + strand at 1804.198 kb on - strand, within CCNA_01677 at 1804.248 kb on + strand, within CCNA_01677 at 1804.330 kb on + strand, within CCNA_01677 at 1804.333 kb on - strand, within CCNA_01677 at 1804.339 kb on - strand, within CCNA_01677 at 1804.567 kb on - strand, within CCNA_01677 at 1804.666 kb on + strand, within CCNA_01677 at 1804.674 kb on - strand, within CCNA_01677
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,799,096 + CCNA_01675 0.76 -0.8 1,799,096 + CCNA_01675 0.76 +0.5 1,799,530 + -0.7 1,799,535 + +1.3 1,799,535 + -0.8 1,799,535 + +0.1 1,799,535 + -1.6 1,799,535 + -0.2 1,799,538 - +0.8 1,799,538 - +0.1 1,799,622 + +0.2 1,799,632 + +0.7 1,799,640 - -0.8 1,799,985 - +0.8 1,801,147 + CCNA_01676 0.38 -0.2 1,801,345 + CCNA_01676 0.43 +0.2 1,801,666 + CCNA_01676 0.50 +0.0 1,801,815 + CCNA_01676 0.54 +0.2 1,802,122 + CCNA_01676 0.61 -0.3 1,802,483 + CCNA_01676 0.70 -0.2 1,803,000 + CCNA_01676 0.83 +0.8 1,803,781 + +0.4 1,803,824 + +1.2 1,804,198 - CCNA_01677 0.31 +0.5 1,804,248 + CCNA_01677 0.35 +0.8 1,804,330 + CCNA_01677 0.41 +0.8 1,804,333 - CCNA_01677 0.42 +0.1 1,804,339 - CCNA_01677 0.42 +0.5 1,804,567 - CCNA_01677 0.60 +0.8 1,804,666 + CCNA_01677 0.68 -0.9 1,804,674 - CCNA_01677 0.69 +0.2
Or see this region's nucleotide sequence