Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01630 and CCNA_01632 are separated by 303 nucleotides CCNA_01632 and CCNA_01633 are separated by 149 nucleotides CCNA_01633 and CCNA_01634 overlap by 8 nucleotides CCNA_01634 and CCNA_01635 are separated by 2 nucleotides
CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721
_01630
CCNA_01632: CCNA_01632 - hypothetical protein, at 1,751,025 to 1,751,486
_01632
CCNA_01633: CCNA_01633 - GTP-binding protein era, at 1,751,636 to 1,752,586
_01633
CCNA_01634: CCNA_01634 - arylamine N-acetyltransferase, at 1,752,579 to 1,753,430
_01634
CCNA_01635: CCNA_01635 - DNA repair protein recO, at 1,753,433 to 1,754,164
_01635
Position (kb)
1751
1752
1753 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1750.697 kb on + strand at 1750.716 kb on + strand at 1750.724 kb on - strand at 1750.724 kb on - strand at 1750.724 kb on - strand at 1750.746 kb on - strand at 1750.785 kb on - strand at 1750.793 kb on - strand at 1750.818 kb on - strand at 1750.825 kb on + strand at 1750.828 kb on - strand at 1750.892 kb on + strand at 1750.902 kb on + strand at 1750.902 kb on + strand at 1750.908 kb on - strand at 1750.908 kb on - strand at 1750.913 kb on + strand at 1750.930 kb on - strand at 1750.971 kb on + strand at 1750.973 kb on + strand at 1750.973 kb on + strand at 1750.973 kb on + strand at 1750.981 kb on - strand at 1750.981 kb on - strand at 1750.981 kb on - strand at 1751.010 kb on - strand at 1751.034 kb on + strand at 1751.051 kb on + strand at 1751.052 kb on - strand at 1751.059 kb on - strand at 1751.067 kb on + strand at 1751.085 kb on + strand, within CCNA_01632 at 1751.085 kb on + strand, within CCNA_01632 at 1751.093 kb on - strand, within CCNA_01632 at 1751.119 kb on + strand, within CCNA_01632 at 1751.142 kb on + strand, within CCNA_01632 at 1751.161 kb on - strand, within CCNA_01632 at 1751.207 kb on + strand, within CCNA_01632 at 1751.232 kb on + strand, within CCNA_01632 at 1751.232 kb on + strand, within CCNA_01632 at 1751.240 kb on - strand, within CCNA_01632 at 1751.251 kb on - strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.298 kb on + strand, within CCNA_01632 at 1751.298 kb on + strand, within CCNA_01632 at 1751.317 kb on - strand, within CCNA_01632 at 1751.400 kb on + strand, within CCNA_01632 at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.462 kb on - strand at 1751.462 kb on - strand at 1751.467 kb on + strand at 1751.475 kb on - strand at 1751.475 kb on - strand at 1751.493 kb on + strand at 1751.493 kb on + strand at 1751.495 kb on + strand at 1751.509 kb on - strand at 1751.526 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand at 1752.514 kb on + strand at 1752.520 kb on + strand at 1752.520 kb on + strand at 1752.573 kb on + strand at 1752.581 kb on - strand at 1752.597 kb on - strand at 1752.637 kb on + strand at 1752.657 kb on + strand at 1752.660 kb on - strand at 1752.734 kb on - strand, within CCNA_01634 at 1752.750 kb on + strand, within CCNA_01634 at 1752.753 kb on - strand, within CCNA_01634 at 1752.758 kb on - strand, within CCNA_01634 at 1752.805 kb on - strand, within CCNA_01634 at 1752.888 kb on + strand, within CCNA_01634 at 1753.022 kb on + strand, within CCNA_01634 at 1753.022 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.023 kb on + strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.031 kb on - strand, within CCNA_01634 at 1753.122 kb on - strand, within CCNA_01634 at 1753.151 kb on + strand, within CCNA_01634 at 1753.172 kb on + strand, within CCNA_01634 at 1753.186 kb on - strand, within CCNA_01634 at 1753.208 kb on - strand, within CCNA_01634 at 1753.217 kb on + strand, within CCNA_01634 at 1753.225 kb on - strand, within CCNA_01634 at 1753.225 kb on - strand, within CCNA_01634 at 1753.265 kb on - strand, within CCNA_01634 at 1753.403 kb on + strand at 1753.430 kb on + strand at 1753.502 kb on + strand at 1753.504 kb on + strand at 1753.545 kb on - strand, within CCNA_01635
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,750,697 + +1.4 1,750,716 + +0.0 1,750,724 - -0.5 1,750,724 - -0.2 1,750,724 - +0.3 1,750,746 - -0.4 1,750,785 - +1.6 1,750,793 - +1.6 1,750,818 - -1.2 1,750,825 + +0.3 1,750,828 - +0.9 1,750,892 + -0.7 1,750,902 + -1.2 1,750,902 + +0.6 1,750,908 - -0.5 1,750,908 - -0.4 1,750,913 + +0.1 1,750,930 - -0.6 1,750,971 + -0.4 1,750,973 + -0.8 1,750,973 + -1.1 1,750,973 + -0.2 1,750,981 - -2.3 1,750,981 - -0.1 1,750,981 - +1.8 1,751,010 - +0.0 1,751,034 + +0.1 1,751,051 + -0.2 1,751,052 - -1.1 1,751,059 - +0.3 1,751,067 + -0.9 1,751,085 + CCNA_01632 0.13 -0.2 1,751,085 + CCNA_01632 0.13 -0.5 1,751,093 - CCNA_01632 0.15 +0.0 1,751,119 + CCNA_01632 0.20 -1.4 1,751,142 + CCNA_01632 0.25 -2.6 1,751,161 - CCNA_01632 0.29 -0.4 1,751,207 + CCNA_01632 0.39 +0.0 1,751,232 + CCNA_01632 0.45 -1.3 1,751,232 + CCNA_01632 0.45 +0.7 1,751,240 - CCNA_01632 0.47 -0.2 1,751,251 - CCNA_01632 0.49 -0.2 1,751,288 + CCNA_01632 0.57 -1.3 1,751,288 + CCNA_01632 0.57 +0.1 1,751,288 + CCNA_01632 0.57 -0.2 1,751,288 + CCNA_01632 0.57 +0.2 1,751,288 + CCNA_01632 0.57 -0.2 1,751,288 + CCNA_01632 0.57 +0.2 1,751,288 + CCNA_01632 0.57 -2.6 1,751,296 - CCNA_01632 0.59 +0.2 1,751,296 - CCNA_01632 0.59 -1.8 1,751,296 - CCNA_01632 0.59 -1.1 1,751,296 - CCNA_01632 0.59 -1.1 1,751,296 - CCNA_01632 0.59 -0.3 1,751,296 - CCNA_01632 0.59 -0.2 1,751,298 + CCNA_01632 0.59 +0.6 1,751,298 + CCNA_01632 0.59 +1.0 1,751,317 - CCNA_01632 0.63 +1.0 1,751,400 + CCNA_01632 0.81 -0.6 1,751,454 + +0.7 1,751,454 + -2.1 1,751,454 + -0.8 1,751,454 + +0.6 1,751,462 - +0.5 1,751,462 - -1.2 1,751,467 + +0.5 1,751,475 - +1.8 1,751,475 - +1.4 1,751,493 + -1.9 1,751,493 + -0.8 1,751,495 + -0.1 1,751,509 - -0.1 1,751,526 - -1.8 1,751,626 - +0.7 1,751,626 - -0.7 1,751,626 - +1.1 1,752,514 + -0.6 1,752,520 + +0.4 1,752,520 + -0.7 1,752,573 + +0.8 1,752,581 - +0.3 1,752,597 - -0.9 1,752,637 + +0.5 1,752,657 + +0.1 1,752,660 - -0.3 1,752,734 - CCNA_01634 0.18 +0.8 1,752,750 + CCNA_01634 0.20 -0.5 1,752,753 - CCNA_01634 0.20 +0.8 1,752,758 - CCNA_01634 0.21 +0.0 1,752,805 - CCNA_01634 0.27 +0.4 1,752,888 + CCNA_01634 0.36 -0.2 1,753,022 + CCNA_01634 0.52 +2.0 1,753,022 + CCNA_01634 0.52 -0.4 1,753,023 + CCNA_01634 0.52 -0.4 1,753,023 + CCNA_01634 0.52 +0.3 1,753,023 + CCNA_01634 0.52 -0.9 1,753,023 + CCNA_01634 0.52 +0.5 1,753,023 + CCNA_01634 0.52 -0.3 1,753,023 + CCNA_01634 0.52 -0.3 1,753,031 - CCNA_01634 0.53 +0.3 1,753,031 - CCNA_01634 0.53 +0.8 1,753,031 - CCNA_01634 0.53 -2.4 1,753,031 - CCNA_01634 0.53 -0.2 1,753,031 - CCNA_01634 0.53 +1.8 1,753,031 - CCNA_01634 0.53 -1.9 1,753,122 - CCNA_01634 0.64 +0.4 1,753,151 + CCNA_01634 0.67 +0.4 1,753,172 + CCNA_01634 0.70 +0.0 1,753,186 - CCNA_01634 0.71 -1.0 1,753,208 - CCNA_01634 0.74 +0.2 1,753,217 + CCNA_01634 0.75 +0.1 1,753,225 - CCNA_01634 0.76 +1.4 1,753,225 - CCNA_01634 0.76 -2.1 1,753,265 - CCNA_01634 0.81 +1.4 1,753,403 + +0.5 1,753,430 + +0.0 1,753,502 + +0.2 1,753,504 + +0.4 1,753,545 - CCNA_01635 0.15 -0.2
Or see this region's nucleotide sequence