Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01626 and CCNA_01627 overlap by 4 nucleotides CCNA_01627 and CCNA_01628 are separated by 11 nucleotides CCNA_01628 and CCNA_01629 are separated by 123 nucleotides CCNA_01629 and CCNA_01630 are separated by 21 nucleotides
CCNA_01626: CCNA_01626 - pyridoxal phosphate biosynthetic protein pdxJ, at 1,747,568 to 1,748,332
_01626
CCNA_01627: CCNA_01627 - Holo-(acyl-carrier protein) synthase, at 1,748,329 to 1,748,730
_01627
CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035
_01628
CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004
_01629
CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721
_01630
Position (kb) 1748
1749
1750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1748.289 kb on + strand at 1748.321 kb on - strand at 1748.753 kb on - strand at 1748.890 kb on + strand, within CCNA_01628 at 1748.901 kb on + strand, within CCNA_01628 at 1749.028 kb on - strand at 1749.042 kb on + strand at 1749.042 kb on + strand at 1749.043 kb on + strand at 1749.050 kb on - strand at 1749.050 kb on - strand at 1749.077 kb on + strand at 1749.077 kb on + strand at 1749.077 kb on + strand at 1749.085 kb on - strand at 1749.085 kb on - strand at 1749.091 kb on + strand at 1749.156 kb on + strand at 1749.156 kb on + strand at 1749.249 kb on - strand, within CCNA_01629 at 1749.251 kb on + strand, within CCNA_01629 at 1749.251 kb on + strand, within CCNA_01629 at 1749.253 kb on + strand, within CCNA_01629 at 1749.259 kb on + strand, within CCNA_01629 at 1749.267 kb on - strand, within CCNA_01629 at 1749.323 kb on + strand, within CCNA_01629 at 1749.366 kb on + strand, within CCNA_01629 at 1749.366 kb on + strand, within CCNA_01629 at 1749.530 kb on - strand, within CCNA_01629 at 1749.530 kb on - strand, within CCNA_01629 at 1749.530 kb on - strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.548 kb on + strand, within CCNA_01629 at 1749.550 kb on - strand, within CCNA_01629 at 1749.551 kb on - strand, within CCNA_01629 at 1749.561 kb on + strand, within CCNA_01629 at 1749.566 kb on + strand, within CCNA_01629 at 1749.568 kb on - strand, within CCNA_01629 at 1749.569 kb on - strand, within CCNA_01629 at 1749.574 kb on - strand, within CCNA_01629 at 1749.576 kb on + strand, within CCNA_01629 at 1749.581 kb on + strand, within CCNA_01629 at 1749.584 kb on - strand, within CCNA_01629 at 1749.589 kb on - strand, within CCNA_01629 at 1749.603 kb on + strand, within CCNA_01629 at 1749.612 kb on - strand, within CCNA_01629 at 1749.624 kb on + strand, within CCNA_01629 at 1749.685 kb on - strand, within CCNA_01629 at 1749.778 kb on + strand, within CCNA_01629 at 1749.905 kb on + strand, within CCNA_01629
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,748,289 + +0.8 1,748,321 - +1.4 1,748,753 - -0.3 1,748,890 + CCNA_01628 0.50 -0.6 1,748,901 + CCNA_01628 0.54 -0.1 1,749,028 - +0.1 1,749,042 + +0.4 1,749,042 + +0.5 1,749,043 + -0.5 1,749,050 - +2.3 1,749,050 - -0.3 1,749,077 + -0.5 1,749,077 + +0.1 1,749,077 + +2.2 1,749,085 - -0.6 1,749,085 - +0.3 1,749,091 + +0.2 1,749,156 + +0.2 1,749,156 + +0.1 1,749,249 - CCNA_01629 0.11 +0.5 1,749,251 + CCNA_01629 0.11 +1.7 1,749,251 + CCNA_01629 0.11 +0.2 1,749,253 + CCNA_01629 0.11 +0.5 1,749,259 + CCNA_01629 0.12 +1.2 1,749,267 - CCNA_01629 0.13 -1.8 1,749,323 + CCNA_01629 0.19 +0.5 1,749,366 + CCNA_01629 0.24 +0.5 1,749,366 + CCNA_01629 0.24 +0.0 1,749,530 - CCNA_01629 0.44 -0.1 1,749,530 - CCNA_01629 0.44 -0.3 1,749,530 - CCNA_01629 0.44 +1.2 1,749,543 + CCNA_01629 0.45 +0.7 1,749,543 + CCNA_01629 0.45 +0.9 1,749,543 + CCNA_01629 0.45 +0.0 1,749,548 + CCNA_01629 0.46 +0.4 1,749,550 - CCNA_01629 0.46 -1.3 1,749,551 - CCNA_01629 0.46 +0.0 1,749,561 + CCNA_01629 0.48 +1.1 1,749,566 + CCNA_01629 0.48 +0.0 1,749,568 - CCNA_01629 0.48 +1.4 1,749,569 - CCNA_01629 0.48 +0.7 1,749,574 - CCNA_01629 0.49 +2.6 1,749,576 + CCNA_01629 0.49 +0.4 1,749,581 + CCNA_01629 0.50 +1.4 1,749,584 - CCNA_01629 0.50 -0.2 1,749,589 - CCNA_01629 0.51 -1.3 1,749,603 + CCNA_01629 0.52 +1.5 1,749,612 - CCNA_01629 0.54 -0.5 1,749,624 + CCNA_01629 0.55 +0.8 1,749,685 - CCNA_01629 0.62 +1.2 1,749,778 + CCNA_01629 0.73 +0.5 1,749,905 + CCNA_01629 0.88 +0.1
Or see this region's nucleotide sequence