Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01450 and CCNA_R0036 are separated by 129 nucleotides CCNA_R0036 and CCNA_R0037 are separated by 45 nucleotides CCNA_R0037 and CCNA_01451 are separated by 172 nucleotides CCNA_01451 and CCNA_01452 overlap by 32 nucleotides CCNA_01452 and CCNA_R0038 are separated by 64 nucleotides CCNA_R0038 and CCNA_01453 are separated by 26 nucleotides
CCNA_01450: CCNA_01450 - single-stranded-DNA-specific exonuclease recJ, at 1,562,926 to 1,564,746
_01450
CCNA_R0036: CCNA_R0036 - tRNA-Glu, at 1,564,876 to 1,564,950
_R0036
CCNA_R0037: CCNA_R0037 - tRNA-Glu, at 1,564,996 to 1,565,070
_R0037
CCNA_01451: CCNA_01451 - cold shock protein cspD, at 1,565,243 to 1,565,833
_01451
CCNA_01452: CCNA_01452 - hypothetical protein, at 1,565,802 to 1,566,356
_01452
CCNA_R0038: CCNA_R0038 - tRNA-Pro, at 1,566,421 to 1,566,497
_R0038
CCNA_01453: CCNA_01453 - electron transport complex I subunit, NADH-ubiquinone oxidoreductase, at 1,566,524 to 1,566,829
_01453
Position (kb)
1565
1566 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1564.715 kb on + strand at 1564.721 kb on - strand at 1564.723 kb on - strand at 1564.749 kb on - strand at 1564.762 kb on + strand at 1564.771 kb on - strand at 1564.776 kb on - strand at 1564.943 kb on - strand at 1565.055 kb on + strand, within CCNA_R0037 at 1565.182 kb on - strand at 1565.228 kb on + strand at 1565.228 kb on + strand at 1565.228 kb on + strand at 1565.236 kb on - strand at 1565.236 kb on - strand at 1565.236 kb on - strand at 1565.236 kb on - strand at 1565.245 kb on - strand at 1565.330 kb on + strand, within CCNA_01451 at 1565.330 kb on + strand, within CCNA_01451 at 1565.332 kb on - strand, within CCNA_01451 at 1565.332 kb on - strand, within CCNA_01451 at 1565.338 kb on - strand, within CCNA_01451 at 1565.355 kb on + strand, within CCNA_01451 at 1565.363 kb on - strand, within CCNA_01451 at 1565.363 kb on - strand, within CCNA_01451 at 1565.363 kb on - strand, within CCNA_01451 at 1565.373 kb on - strand, within CCNA_01451 at 1565.447 kb on - strand, within CCNA_01451 at 1565.542 kb on + strand, within CCNA_01451 at 1565.609 kb on - strand, within CCNA_01451 at 1565.662 kb on + strand, within CCNA_01451 at 1565.663 kb on + strand, within CCNA_01451 at 1565.671 kb on - strand, within CCNA_01451 at 1565.671 kb on - strand, within CCNA_01451 at 1565.688 kb on - strand, within CCNA_01451 at 1565.713 kb on + strand, within CCNA_01451 at 1565.725 kb on + strand, within CCNA_01451 at 1565.773 kb on - strand, within CCNA_01451 at 1565.795 kb on - strand at 1565.855 kb on + strand at 1565.933 kb on - strand, within CCNA_01452 at 1565.964 kb on + strand, within CCNA_01452 at 1566.023 kb on + strand, within CCNA_01452 at 1566.115 kb on + strand, within CCNA_01452 at 1566.123 kb on - strand, within CCNA_01452 at 1566.243 kb on - strand, within CCNA_01452 at 1566.256 kb on - strand, within CCNA_01452 at 1566.272 kb on - strand, within CCNA_01452 at 1566.290 kb on + strand, within CCNA_01452 at 1566.300 kb on + strand, within CCNA_01452 at 1566.300 kb on + strand, within CCNA_01452 at 1566.306 kb on + strand at 1566.314 kb on + strand at 1566.384 kb on + strand at 1566.391 kb on + strand at 1566.394 kb on + strand at 1566.402 kb on - strand at 1566.519 kb on + strand at 1566.527 kb on - strand at 1566.574 kb on + strand, within CCNA_01453 at 1566.574 kb on + strand, within CCNA_01453 at 1566.581 kb on + strand, within CCNA_01453 at 1566.582 kb on - strand, within CCNA_01453 at 1566.582 kb on - strand, within CCNA_01453 at 1566.587 kb on - strand, within CCNA_01453 at 1566.642 kb on + strand, within CCNA_01453 at 1566.650 kb on + strand, within CCNA_01453 at 1566.684 kb on + strand, within CCNA_01453 at 1566.711 kb on + strand, within CCNA_01453 at 1566.719 kb on - strand, within CCNA_01453 at 1566.719 kb on - strand, within CCNA_01453 at 1566.781 kb on - strand, within CCNA_01453 at 1566.781 kb on - strand, within CCNA_01453 at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.814 kb on + strand at 1566.822 kb on - strand at 1566.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,564,715 + +0.0 1,564,721 - +0.2 1,564,723 - +0.8 1,564,749 - -0.2 1,564,762 + +1.0 1,564,771 - -1.2 1,564,776 - +0.1 1,564,943 - -1.5 1,565,055 + CCNA_R0037 0.79 +0.1 1,565,182 - +0.5 1,565,228 + +0.1 1,565,228 + +1.6 1,565,228 + +0.3 1,565,236 - -0.5 1,565,236 - +0.1 1,565,236 - -1.4 1,565,236 - -1.3 1,565,245 - +1.8 1,565,330 + CCNA_01451 0.15 +0.1 1,565,330 + CCNA_01451 0.15 +0.9 1,565,332 - CCNA_01451 0.15 -1.5 1,565,332 - CCNA_01451 0.15 -0.4 1,565,338 - CCNA_01451 0.16 -0.9 1,565,355 + CCNA_01451 0.19 +0.3 1,565,363 - CCNA_01451 0.20 -0.5 1,565,363 - CCNA_01451 0.20 -2.0 1,565,363 - CCNA_01451 0.20 -0.9 1,565,373 - CCNA_01451 0.22 -0.4 1,565,447 - CCNA_01451 0.35 -0.3 1,565,542 + CCNA_01451 0.51 +0.3 1,565,609 - CCNA_01451 0.62 -0.4 1,565,662 + CCNA_01451 0.71 +0.4 1,565,663 + CCNA_01451 0.71 +0.6 1,565,671 - CCNA_01451 0.72 +1.2 1,565,671 - CCNA_01451 0.72 -0.7 1,565,688 - CCNA_01451 0.75 -1.2 1,565,713 + CCNA_01451 0.80 +0.2 1,565,725 + CCNA_01451 0.82 +2.0 1,565,773 - CCNA_01451 0.90 -0.9 1,565,795 - -2.1 1,565,855 + +1.1 1,565,933 - CCNA_01452 0.24 +0.1 1,565,964 + CCNA_01452 0.29 +0.5 1,566,023 + CCNA_01452 0.40 +0.3 1,566,115 + CCNA_01452 0.56 +0.5 1,566,123 - CCNA_01452 0.58 -1.2 1,566,243 - CCNA_01452 0.79 +1.1 1,566,256 - CCNA_01452 0.82 +0.6 1,566,272 - CCNA_01452 0.85 +0.1 1,566,290 + CCNA_01452 0.88 +0.3 1,566,300 + CCNA_01452 0.90 -0.1 1,566,300 + CCNA_01452 0.90 +0.6 1,566,306 + -0.3 1,566,314 + +0.6 1,566,384 + -1.7 1,566,391 + +1.1 1,566,394 + -0.2 1,566,402 - +0.0 1,566,519 + -0.0 1,566,527 - +0.8 1,566,574 + CCNA_01453 0.16 +2.5 1,566,574 + CCNA_01453 0.16 +0.0 1,566,581 + CCNA_01453 0.19 +0.0 1,566,582 - CCNA_01453 0.19 +0.1 1,566,582 - CCNA_01453 0.19 -0.8 1,566,587 - CCNA_01453 0.21 +1.0 1,566,642 + CCNA_01453 0.39 -0.1 1,566,650 + CCNA_01453 0.41 +0.2 1,566,684 + CCNA_01453 0.52 -0.7 1,566,711 + CCNA_01453 0.61 +0.3 1,566,719 - CCNA_01453 0.64 +0.1 1,566,719 - CCNA_01453 0.64 +1.2 1,566,781 - CCNA_01453 0.84 -0.2 1,566,781 - CCNA_01453 0.84 +1.2 1,566,814 + -0.4 1,566,814 + -0.7 1,566,814 + +0.9 1,566,814 + +1.6 1,566,814 + +0.2 1,566,814 + +0.2 1,566,814 + +0.2 1,566,814 + +0.4 1,566,814 + +0.4 1,566,814 + +0.2 1,566,822 - -1.5 1,566,822 - +0.0
Or see this region's nucleotide sequence