Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01449 and CCNA_01450 are separated by 67 nucleotides CCNA_01450 and CCNA_R0036 are separated by 129 nucleotides CCNA_R0036 and CCNA_R0037 are separated by 45 nucleotides CCNA_R0037 and CCNA_01451 are separated by 172 nucleotides
CCNA_01449: CCNA_01449 - fructose-1,6-bisphosphatase, FIG superfamily, at 1,561,881 to 1,562,858
_01449
CCNA_01450: CCNA_01450 - single-stranded-DNA-specific exonuclease recJ, at 1,562,926 to 1,564,746
_01450
CCNA_R0036: CCNA_R0036 - tRNA-Glu, at 1,564,876 to 1,564,950
_R0036
CCNA_R0037: CCNA_R0037 - tRNA-Glu, at 1,564,996 to 1,565,070
_R0037
CCNA_01451: CCNA_01451 - cold shock protein cspD, at 1,565,243 to 1,565,833
_01451
Position (kb)
1562
1563
1564
1565 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1561.935 kb on + strand at 1561.943 kb on - strand at 1561.950 kb on + strand at 1561.950 kb on + strand at 1561.950 kb on + strand at 1561.950 kb on + strand at 1561.950 kb on + strand at 1561.958 kb on - strand at 1561.996 kb on - strand, within CCNA_01449 at 1561.999 kb on + strand, within CCNA_01449 at 1562.009 kb on + strand, within CCNA_01449 at 1562.055 kb on + strand, within CCNA_01449 at 1562.074 kb on - strand, within CCNA_01449 at 1562.074 kb on - strand, within CCNA_01449 at 1562.103 kb on + strand, within CCNA_01449 at 1562.108 kb on - strand, within CCNA_01449 at 1562.152 kb on - strand, within CCNA_01449 at 1562.166 kb on + strand, within CCNA_01449 at 1562.249 kb on + strand, within CCNA_01449 at 1562.283 kb on - strand, within CCNA_01449 at 1562.338 kb on - strand, within CCNA_01449 at 1562.339 kb on - strand, within CCNA_01449 at 1562.353 kb on + strand, within CCNA_01449 at 1562.400 kb on - strand, within CCNA_01449 at 1562.532 kb on - strand, within CCNA_01449 at 1562.545 kb on - strand, within CCNA_01449 at 1562.573 kb on + strand, within CCNA_01449 at 1562.639 kb on + strand, within CCNA_01449 at 1562.641 kb on + strand, within CCNA_01449 at 1562.647 kb on - strand, within CCNA_01449 at 1562.647 kb on - strand, within CCNA_01449 at 1562.647 kb on - strand, within CCNA_01449 at 1562.647 kb on - strand, within CCNA_01449 at 1562.647 kb on - strand, within CCNA_01449 at 1562.779 kb on + strand at 1562.779 kb on + strand at 1562.791 kb on - strand at 1562.822 kb on + strand at 1562.839 kb on - strand at 1562.843 kb on + strand at 1562.863 kb on + strand at 1562.863 kb on + strand at 1562.882 kb on - strand at 1562.893 kb on + strand at 1562.919 kb on - strand at 1562.919 kb on - strand at 1564.715 kb on + strand at 1564.721 kb on - strand at 1564.723 kb on - strand at 1564.749 kb on - strand at 1564.762 kb on + strand at 1564.771 kb on - strand at 1564.776 kb on - strand at 1564.943 kb on - strand at 1565.055 kb on + strand, within CCNA_R0037 at 1565.182 kb on - strand at 1565.228 kb on + strand at 1565.228 kb on + strand at 1565.228 kb on + strand at 1565.236 kb on - strand at 1565.236 kb on - strand at 1565.236 kb on - strand at 1565.236 kb on - strand at 1565.245 kb on - strand at 1565.330 kb on + strand, within CCNA_01451 at 1565.330 kb on + strand, within CCNA_01451 at 1565.332 kb on - strand, within CCNA_01451 at 1565.332 kb on - strand, within CCNA_01451 at 1565.338 kb on - strand, within CCNA_01451 at 1565.355 kb on + strand, within CCNA_01451 at 1565.363 kb on - strand, within CCNA_01451 at 1565.363 kb on - strand, within CCNA_01451 at 1565.363 kb on - strand, within CCNA_01451 at 1565.373 kb on - strand, within CCNA_01451 at 1565.447 kb on - strand, within CCNA_01451 at 1565.542 kb on + strand, within CCNA_01451 at 1565.609 kb on - strand, within CCNA_01451 at 1565.662 kb on + strand, within CCNA_01451 at 1565.663 kb on + strand, within CCNA_01451 at 1565.671 kb on - strand, within CCNA_01451 at 1565.671 kb on - strand, within CCNA_01451 at 1565.688 kb on - strand, within CCNA_01451 at 1565.713 kb on + strand, within CCNA_01451 at 1565.725 kb on + strand, within CCNA_01451
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,561,935 + -0.3 1,561,943 - -1.1 1,561,950 + +0.8 1,561,950 + -0.2 1,561,950 + -0.9 1,561,950 + +0.8 1,561,950 + +0.5 1,561,958 - +0.1 1,561,996 - CCNA_01449 0.12 -0.8 1,561,999 + CCNA_01449 0.12 -0.8 1,562,009 + CCNA_01449 0.13 -0.7 1,562,055 + CCNA_01449 0.18 +0.5 1,562,074 - CCNA_01449 0.20 -1.4 1,562,074 - CCNA_01449 0.20 -0.2 1,562,103 + CCNA_01449 0.23 +1.8 1,562,108 - CCNA_01449 0.23 +2.4 1,562,152 - CCNA_01449 0.28 +0.5 1,562,166 + CCNA_01449 0.29 +2.0 1,562,249 + CCNA_01449 0.38 -0.5 1,562,283 - CCNA_01449 0.41 -0.7 1,562,338 - CCNA_01449 0.47 -0.2 1,562,339 - CCNA_01449 0.47 -2.4 1,562,353 + CCNA_01449 0.48 -0.9 1,562,400 - CCNA_01449 0.53 +0.8 1,562,532 - CCNA_01449 0.67 -0.2 1,562,545 - CCNA_01449 0.68 -0.5 1,562,573 + CCNA_01449 0.71 +0.7 1,562,639 + CCNA_01449 0.78 +1.5 1,562,641 + CCNA_01449 0.78 -1.2 1,562,647 - CCNA_01449 0.78 -0.6 1,562,647 - CCNA_01449 0.78 -2.0 1,562,647 - CCNA_01449 0.78 +0.8 1,562,647 - CCNA_01449 0.78 -0.3 1,562,647 - CCNA_01449 0.78 +0.2 1,562,779 + -0.5 1,562,779 + -0.2 1,562,791 - +0.5 1,562,822 + -0.1 1,562,839 - -0.2 1,562,843 + +0.9 1,562,863 + +0.1 1,562,863 + +0.8 1,562,882 - +1.0 1,562,893 + +0.6 1,562,919 - -0.9 1,562,919 - -0.6 1,564,715 + +0.0 1,564,721 - +0.2 1,564,723 - +0.8 1,564,749 - -0.2 1,564,762 + +1.0 1,564,771 - -1.2 1,564,776 - +0.1 1,564,943 - -1.5 1,565,055 + CCNA_R0037 0.79 +0.1 1,565,182 - +0.5 1,565,228 + +0.1 1,565,228 + +1.6 1,565,228 + +0.3 1,565,236 - -0.5 1,565,236 - +0.1 1,565,236 - -1.4 1,565,236 - -1.3 1,565,245 - +1.8 1,565,330 + CCNA_01451 0.15 +0.1 1,565,330 + CCNA_01451 0.15 +0.9 1,565,332 - CCNA_01451 0.15 -1.5 1,565,332 - CCNA_01451 0.15 -0.4 1,565,338 - CCNA_01451 0.16 -0.9 1,565,355 + CCNA_01451 0.19 +0.3 1,565,363 - CCNA_01451 0.20 -0.5 1,565,363 - CCNA_01451 0.20 -2.0 1,565,363 - CCNA_01451 0.20 -0.9 1,565,373 - CCNA_01451 0.22 -0.4 1,565,447 - CCNA_01451 0.35 -0.3 1,565,542 + CCNA_01451 0.51 +0.3 1,565,609 - CCNA_01451 0.62 -0.4 1,565,662 + CCNA_01451 0.71 +0.4 1,565,663 + CCNA_01451 0.71 +0.6 1,565,671 - CCNA_01451 0.72 +1.2 1,565,671 - CCNA_01451 0.72 -0.7 1,565,688 - CCNA_01451 0.75 -1.2 1,565,713 + CCNA_01451 0.80 +0.2 1,565,725 + CCNA_01451 0.82 +2.0
Or see this region's nucleotide sequence