Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01400

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01399 and CCNA_01400 are separated by 26 nucleotidesCCNA_01400 and CCNA_01403 are separated by 480 nucleotides CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088 _01399 CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453 _01400 CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833 _01403 Position (kb) 1520 1521Strain fitness (log2 ratio) -2 -1 0 1 2at 1519.124 kb on + strand, within CCNA_01399at 1519.124 kb on + strand, within CCNA_01399at 1519.124 kb on + strand, within CCNA_01399at 1519.124 kb on + strand, within CCNA_01399at 1519.196 kb on + strand, within CCNA_01399at 1519.201 kb on + strand, within CCNA_01399at 1519.204 kb on - strand, within CCNA_01399at 1519.209 kb on - strand, within CCNA_01399at 1519.209 kb on - strand, within CCNA_01399at 1519.227 kb on + strand, within CCNA_01399at 1519.227 kb on + strand, within CCNA_01399at 1519.235 kb on - strand, within CCNA_01399at 1519.264 kb on + strand, within CCNA_01399at 1519.272 kb on - strand, within CCNA_01399at 1519.321 kb on - strand, within CCNA_01399at 1519.326 kb on - strand, within CCNA_01399at 1519.326 kb on - strand, within CCNA_01399at 1519.345 kb on + strand, within CCNA_01399at 1519.361 kb on + strand, within CCNA_01399at 1519.366 kb on + strand, within CCNA_01399at 1519.369 kb on - strand, within CCNA_01399at 1519.369 kb on - strand, within CCNA_01399at 1519.369 kb on - strand, within CCNA_01399at 1519.379 kb on - strand, within CCNA_01399at 1519.409 kb on - strand, within CCNA_01399at 1519.434 kb on - strand, within CCNA_01399at 1519.434 kb on - strand, within CCNA_01399at 1519.516 kb on - strand, within CCNA_01399at 1519.599 kb on - strand, within CCNA_01399at 1519.606 kb on - strand, within CCNA_01399at 1519.618 kb on + strand, within CCNA_01399at 1519.626 kb on - strand, within CCNA_01399at 1519.654 kb on + strand, within CCNA_01399at 1519.654 kb on + strand, within CCNA_01399at 1519.654 kb on + strand, within CCNA_01399at 1519.662 kb on - strand, within CCNA_01399at 1519.662 kb on - strand, within CCNA_01399at 1519.662 kb on - strand, within CCNA_01399at 1519.705 kb on + strand, within CCNA_01399at 1519.712 kb on + strand, within CCNA_01399at 1519.720 kb on - strand, within CCNA_01399at 1519.751 kb on + strand, within CCNA_01399at 1519.751 kb on + strand, within CCNA_01399at 1519.759 kb on - strand, within CCNA_01399at 1519.759 kb on - strand, within CCNA_01399at 1519.792 kb on + strand, within CCNA_01399at 1519.795 kb on - strand, within CCNA_01399at 1519.800 kb on - strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.837 kb on - strand, within CCNA_01399at 1519.851 kb on - strand, within CCNA_01399at 1519.858 kb on - strand, within CCNA_01399at 1520.034 kb on + strandat 1520.112 kb on + strandat 1520.120 kb on - strandat 1520.228 kb on - strand, within CCNA_01400at 1520.253 kb on + strand, within CCNA_01400at 1520.344 kb on + strand, within CCNA_01400at 1520.425 kb on + strandat 1520.425 kb on - strandat 1520.445 kb on - strandat 1520.461 kb on + strandat 1520.482 kb on + strandat 1520.482 kb on + strandat 1520.490 kb on - strandat 1520.554 kb on - strandat 1520.735 kb on + strandat 1520.743 kb on - strandat 1520.794 kb on + strandat 1520.919 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,519,124 + CCNA_01399 0.37 +0.2
1,519,124 + CCNA_01399 0.37 -0.8
1,519,124 + CCNA_01399 0.37 -0.2
1,519,124 + CCNA_01399 0.37 +0.8
1,519,196 + CCNA_01399 0.42 -1.9
1,519,201 + CCNA_01399 0.42 +0.0
1,519,204 - CCNA_01399 0.42 +0.5
1,519,209 - CCNA_01399 0.43 -0.6
1,519,209 - CCNA_01399 0.43 -1.5
1,519,227 + CCNA_01399 0.44 -0.4
1,519,227 + CCNA_01399 0.44 -2.2
1,519,235 - CCNA_01399 0.44 -0.0
1,519,264 + CCNA_01399 0.46 -1.5
1,519,272 - CCNA_01399 0.47 +0.7
1,519,321 - CCNA_01399 0.50 +0.2
1,519,326 - CCNA_01399 0.50 +0.4
1,519,326 - CCNA_01399 0.50 +2.5
1,519,345 + CCNA_01399 0.51 -2.0
1,519,361 + CCNA_01399 0.53 -0.9
1,519,366 + CCNA_01399 0.53 +0.6
1,519,369 - CCNA_01399 0.53 -1.0
1,519,369 - CCNA_01399 0.53 +1.5
1,519,369 - CCNA_01399 0.53 +0.3
1,519,379 - CCNA_01399 0.54 +1.2
1,519,409 - CCNA_01399 0.56 -0.1
1,519,434 - CCNA_01399 0.57 -0.5
1,519,434 - CCNA_01399 0.57 +0.7
1,519,516 - CCNA_01399 0.63 +0.3
1,519,599 - CCNA_01399 0.68 +0.1
1,519,606 - CCNA_01399 0.68 +0.9
1,519,618 + CCNA_01399 0.69 -0.7
1,519,626 - CCNA_01399 0.70 -0.7
1,519,654 + CCNA_01399 0.72 -1.1
1,519,654 + CCNA_01399 0.72 +2.0
1,519,654 + CCNA_01399 0.72 +1.8
1,519,662 - CCNA_01399 0.72 -0.2
1,519,662 - CCNA_01399 0.72 +0.4
1,519,662 - CCNA_01399 0.72 +0.4
1,519,705 + CCNA_01399 0.75 -0.7
1,519,712 + CCNA_01399 0.75 +0.1
1,519,720 - CCNA_01399 0.76 +0.5
1,519,751 + CCNA_01399 0.78 -0.4
1,519,751 + CCNA_01399 0.78 +0.5
1,519,759 - CCNA_01399 0.78 -0.2
1,519,759 - CCNA_01399 0.78 +0.5
1,519,792 + CCNA_01399 0.81 -0.5
1,519,795 - CCNA_01399 0.81 -0.6
1,519,800 - CCNA_01399 0.81 +0.5
1,519,802 + CCNA_01399 0.81 -0.9
1,519,802 + CCNA_01399 0.81 -0.0
1,519,802 + CCNA_01399 0.81 -2.5
1,519,802 + CCNA_01399 0.81 -0.1
1,519,802 + CCNA_01399 0.81 -1.1
1,519,802 + CCNA_01399 0.81 -0.0
1,519,802 + CCNA_01399 0.81 +1.1
1,519,802 + CCNA_01399 0.81 -0.8
1,519,802 + CCNA_01399 0.81 -0.5
1,519,802 + CCNA_01399 0.81 -1.7
1,519,802 + CCNA_01399 0.81 -0.0
1,519,802 + CCNA_01399 0.81 +1.0
1,519,802 + CCNA_01399 0.81 -1.3
1,519,802 + CCNA_01399 0.81 +0.5
1,519,810 - CCNA_01399 0.82 -0.8
1,519,810 - CCNA_01399 0.82 +1.2
1,519,810 - CCNA_01399 0.82 -0.4
1,519,810 - CCNA_01399 0.82 -1.5
1,519,810 - CCNA_01399 0.82 +0.3
1,519,810 - CCNA_01399 0.82 +1.1
1,519,810 - CCNA_01399 0.82 +0.2
1,519,810 - CCNA_01399 0.82 +0.3
1,519,837 - CCNA_01399 0.84 +0.6
1,519,851 - CCNA_01399 0.84 -1.4
1,519,858 - CCNA_01399 0.85 +1.6
1,520,034 + -1.8
1,520,112 + -0.0
1,520,120 - +0.8
1,520,228 - CCNA_01400 0.33 +0.5
1,520,253 + CCNA_01400 0.41 -1.3
1,520,344 + CCNA_01400 0.68 -1.7
1,520,425 + +1.7
1,520,425 - -0.4
1,520,445 - -0.2
1,520,461 + +0.4
1,520,482 + -0.0
1,520,482 + +0.0
1,520,490 - -0.4
1,520,554 - -0.5
1,520,735 + -0.7
1,520,743 - -1.0
1,520,794 + -0.8
1,520,919 + +0.1

Or see this region's nucleotide sequence