Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01399 and CCNA_01400 are separated by 26 nucleotides CCNA_01400 and CCNA_01403 are separated by 480 nucleotides
CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088
_01399
CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453
_01400
CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833
_01403
Position (kb)
1520
1521 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.196 kb on + strand, within CCNA_01399 at 1519.201 kb on + strand, within CCNA_01399 at 1519.204 kb on - strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.227 kb on + strand, within CCNA_01399 at 1519.227 kb on + strand, within CCNA_01399 at 1519.235 kb on - strand, within CCNA_01399 at 1519.264 kb on + strand, within CCNA_01399 at 1519.272 kb on - strand, within CCNA_01399 at 1519.321 kb on - strand, within CCNA_01399 at 1519.326 kb on - strand, within CCNA_01399 at 1519.326 kb on - strand, within CCNA_01399 at 1519.345 kb on + strand, within CCNA_01399 at 1519.361 kb on + strand, within CCNA_01399 at 1519.366 kb on + strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.379 kb on - strand, within CCNA_01399 at 1519.409 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.516 kb on - strand, within CCNA_01399 at 1519.599 kb on - strand, within CCNA_01399 at 1519.606 kb on - strand, within CCNA_01399 at 1519.618 kb on + strand, within CCNA_01399 at 1519.626 kb on - strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.705 kb on + strand, within CCNA_01399 at 1519.712 kb on + strand, within CCNA_01399 at 1519.720 kb on - strand, within CCNA_01399 at 1519.751 kb on + strand, within CCNA_01399 at 1519.751 kb on + strand, within CCNA_01399 at 1519.759 kb on - strand, within CCNA_01399 at 1519.759 kb on - strand, within CCNA_01399 at 1519.792 kb on + strand, within CCNA_01399 at 1519.795 kb on - strand, within CCNA_01399 at 1519.800 kb on - strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.837 kb on - strand, within CCNA_01399 at 1519.851 kb on - strand, within CCNA_01399 at 1519.858 kb on - strand, within CCNA_01399 at 1520.034 kb on + strand at 1520.112 kb on + strand at 1520.120 kb on - strand at 1520.228 kb on - strand, within CCNA_01400 at 1520.253 kb on + strand, within CCNA_01400 at 1520.344 kb on + strand, within CCNA_01400 at 1520.425 kb on + strand at 1520.425 kb on - strand at 1520.445 kb on - strand at 1520.461 kb on + strand at 1520.482 kb on + strand at 1520.482 kb on + strand at 1520.490 kb on - strand at 1520.554 kb on - strand at 1520.735 kb on + strand at 1520.743 kb on - strand at 1520.794 kb on + strand at 1520.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,519,124 + CCNA_01399 0.37 +0.2 1,519,124 + CCNA_01399 0.37 -0.8 1,519,124 + CCNA_01399 0.37 -0.2 1,519,124 + CCNA_01399 0.37 +0.8 1,519,196 + CCNA_01399 0.42 -1.9 1,519,201 + CCNA_01399 0.42 +0.0 1,519,204 - CCNA_01399 0.42 +0.5 1,519,209 - CCNA_01399 0.43 -0.6 1,519,209 - CCNA_01399 0.43 -1.5 1,519,227 + CCNA_01399 0.44 -0.4 1,519,227 + CCNA_01399 0.44 -2.2 1,519,235 - CCNA_01399 0.44 -0.0 1,519,264 + CCNA_01399 0.46 -1.5 1,519,272 - CCNA_01399 0.47 +0.7 1,519,321 - CCNA_01399 0.50 +0.2 1,519,326 - CCNA_01399 0.50 +0.4 1,519,326 - CCNA_01399 0.50 +2.5 1,519,345 + CCNA_01399 0.51 -2.0 1,519,361 + CCNA_01399 0.53 -0.9 1,519,366 + CCNA_01399 0.53 +0.6 1,519,369 - CCNA_01399 0.53 -1.0 1,519,369 - CCNA_01399 0.53 +1.5 1,519,369 - CCNA_01399 0.53 +0.3 1,519,379 - CCNA_01399 0.54 +1.2 1,519,409 - CCNA_01399 0.56 -0.1 1,519,434 - CCNA_01399 0.57 -0.5 1,519,434 - CCNA_01399 0.57 +0.7 1,519,516 - CCNA_01399 0.63 +0.3 1,519,599 - CCNA_01399 0.68 +0.1 1,519,606 - CCNA_01399 0.68 +0.9 1,519,618 + CCNA_01399 0.69 -0.7 1,519,626 - CCNA_01399 0.70 -0.7 1,519,654 + CCNA_01399 0.72 -1.1 1,519,654 + CCNA_01399 0.72 +2.0 1,519,654 + CCNA_01399 0.72 +1.8 1,519,662 - CCNA_01399 0.72 -0.2 1,519,662 - CCNA_01399 0.72 +0.4 1,519,662 - CCNA_01399 0.72 +0.4 1,519,705 + CCNA_01399 0.75 -0.7 1,519,712 + CCNA_01399 0.75 +0.1 1,519,720 - CCNA_01399 0.76 +0.5 1,519,751 + CCNA_01399 0.78 -0.4 1,519,751 + CCNA_01399 0.78 +0.5 1,519,759 - CCNA_01399 0.78 -0.2 1,519,759 - CCNA_01399 0.78 +0.5 1,519,792 + CCNA_01399 0.81 -0.5 1,519,795 - CCNA_01399 0.81 -0.6 1,519,800 - CCNA_01399 0.81 +0.5 1,519,802 + CCNA_01399 0.81 -0.9 1,519,802 + CCNA_01399 0.81 -0.0 1,519,802 + CCNA_01399 0.81 -2.5 1,519,802 + CCNA_01399 0.81 -0.1 1,519,802 + CCNA_01399 0.81 -1.1 1,519,802 + CCNA_01399 0.81 -0.0 1,519,802 + CCNA_01399 0.81 +1.1 1,519,802 + CCNA_01399 0.81 -0.8 1,519,802 + CCNA_01399 0.81 -0.5 1,519,802 + CCNA_01399 0.81 -1.7 1,519,802 + CCNA_01399 0.81 -0.0 1,519,802 + CCNA_01399 0.81 +1.0 1,519,802 + CCNA_01399 0.81 -1.3 1,519,802 + CCNA_01399 0.81 +0.5 1,519,810 - CCNA_01399 0.82 -0.8 1,519,810 - CCNA_01399 0.82 +1.2 1,519,810 - CCNA_01399 0.82 -0.4 1,519,810 - CCNA_01399 0.82 -1.5 1,519,810 - CCNA_01399 0.82 +0.3 1,519,810 - CCNA_01399 0.82 +1.1 1,519,810 - CCNA_01399 0.82 +0.2 1,519,810 - CCNA_01399 0.82 +0.3 1,519,837 - CCNA_01399 0.84 +0.6 1,519,851 - CCNA_01399 0.84 -1.4 1,519,858 - CCNA_01399 0.85 +1.6 1,520,034 + -1.8 1,520,112 + -0.0 1,520,120 - +0.8 1,520,228 - CCNA_01400 0.33 +0.5 1,520,253 + CCNA_01400 0.41 -1.3 1,520,344 + CCNA_01400 0.68 -1.7 1,520,425 + +1.7 1,520,425 - -0.4 1,520,445 - -0.2 1,520,461 + +0.4 1,520,482 + -0.0 1,520,482 + +0.0 1,520,490 - -0.4 1,520,554 - -0.5 1,520,735 + -0.7 1,520,743 - -1.0 1,520,794 + -0.8 1,520,919 + +0.1
Or see this region's nucleotide sequence