Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01379 and CCNA_01380 are separated by 128 nucleotides CCNA_01380 and CCNA_01381 are separated by 126 nucleotides CCNA_01381 and CCNA_01382 are separated by 294 nucleotides
CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683
_01379
CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345
_01380
CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192
_01381
CCNA_01382: CCNA_01382 - long-chain-fatty-acid--CoA ligase, at 1,498,487 to 1,500,238
_01382
Position (kb)
1495
1496
1497
1498
1499 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1494.528 kb on - strand, within CCNA_01379 at 1494.699 kb on + strand at 1494.717 kb on - strand at 1494.765 kb on + strand at 1495.348 kb on + strand at 1495.410 kb on - strand at 1498.253 kb on - strand at 1498.291 kb on - strand at 1498.361 kb on - strand at 1498.363 kb on + strand at 1498.371 kb on - strand at 1498.431 kb on - strand at 1498.527 kb on + strand at 1498.542 kb on + strand at 1498.547 kb on + strand at 1498.550 kb on - strand at 1498.561 kb on + strand at 1498.561 kb on + strand at 1498.569 kb on - strand at 1498.569 kb on - strand at 1498.569 kb on - strand at 1498.578 kb on + strand at 1498.578 kb on + strand at 1498.609 kb on + strand at 1498.642 kb on + strand at 1498.642 kb on + strand at 1498.708 kb on + strand, within CCNA_01382 at 1498.708 kb on + strand, within CCNA_01382 at 1498.731 kb on - strand, within CCNA_01382 at 1498.744 kb on - strand, within CCNA_01382 at 1498.772 kb on + strand, within CCNA_01382 at 1498.819 kb on - strand, within CCNA_01382 at 1498.852 kb on - strand, within CCNA_01382 at 1498.862 kb on - strand, within CCNA_01382 at 1498.960 kb on + strand, within CCNA_01382 at 1498.976 kb on + strand, within CCNA_01382 at 1498.993 kb on + strand, within CCNA_01382 at 1498.994 kb on - strand, within CCNA_01382 at 1499.080 kb on + strand, within CCNA_01382 at 1499.088 kb on - strand, within CCNA_01382 at 1499.157 kb on - strand, within CCNA_01382 at 1499.157 kb on - strand, within CCNA_01382
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,494,528 - CCNA_01379 0.89 -0.8 1,494,699 + +0.5 1,494,717 - -0.6 1,494,765 + +0.6 1,495,348 + +1.1 1,495,410 - +0.3 1,498,253 - +0.6 1,498,291 - +0.9 1,498,361 - +0.0 1,498,363 + +0.4 1,498,371 - -0.1 1,498,431 - -0.2 1,498,527 + +0.4 1,498,542 + +0.7 1,498,547 + +0.1 1,498,550 - +0.4 1,498,561 + +0.4 1,498,561 + +0.5 1,498,569 - -0.1 1,498,569 - -0.4 1,498,569 - -0.9 1,498,578 + +0.2 1,498,578 + -0.2 1,498,609 + -0.1 1,498,642 + +0.4 1,498,642 + +0.5 1,498,708 + CCNA_01382 0.13 +0.6 1,498,708 + CCNA_01382 0.13 +0.3 1,498,731 - CCNA_01382 0.14 -0.6 1,498,744 - CCNA_01382 0.15 +0.1 1,498,772 + CCNA_01382 0.16 +0.7 1,498,819 - CCNA_01382 0.19 -0.6 1,498,852 - CCNA_01382 0.21 -1.3 1,498,862 - CCNA_01382 0.21 +0.6 1,498,960 + CCNA_01382 0.27 +1.5 1,498,976 + CCNA_01382 0.28 +0.8 1,498,993 + CCNA_01382 0.29 -0.0 1,498,994 - CCNA_01382 0.29 +0.6 1,499,080 + CCNA_01382 0.34 +2.8 1,499,088 - CCNA_01382 0.34 -0.3 1,499,157 - CCNA_01382 0.38 -0.7 1,499,157 - CCNA_01382 0.38 +0.3
Or see this region's nucleotide sequence