Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01274 and CCNA_01275 are separated by 108 nucleotides CCNA_01275 and CCNA_01276 overlap by 1 nucleotides CCNA_01276 and CCNA_01277 are separated by 16 nucleotides
CCNA_01274: CCNA_01274 - piperideine-6-carboxylate dehydrogenase, at 1,400,085 to 1,401,608
_01274
CCNA_01275: CCNA_01275 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 1,401,717 to 1,402,610
_01275
CCNA_01276: CCNA_01276 - cytochrome c5, at 1,402,610 to 1,402,969
_01276
CCNA_01277: CCNA_01277 - FAD-linked oxidoreductase, at 1,402,986 to 1,404,392
_01277
Position (kb)
1401
1402
1403 Strain fitness (log2 ratio)
-2
-1
0
1 at 1400.720 kb on - strand, within CCNA_01274 at 1400.722 kb on + strand, within CCNA_01274 at 1400.822 kb on - strand, within CCNA_01274 at 1400.856 kb on + strand, within CCNA_01274 at 1400.899 kb on + strand, within CCNA_01274 at 1400.899 kb on + strand, within CCNA_01274 at 1400.960 kb on + strand, within CCNA_01274 at 1400.965 kb on + strand, within CCNA_01274 at 1400.965 kb on + strand, within CCNA_01274 at 1400.984 kb on - strand, within CCNA_01274 at 1401.012 kb on + strand, within CCNA_01274 at 1401.012 kb on + strand, within CCNA_01274 at 1401.012 kb on + strand, within CCNA_01274 at 1401.020 kb on - strand, within CCNA_01274 at 1401.020 kb on - strand, within CCNA_01274 at 1401.020 kb on - strand, within CCNA_01274 at 1401.020 kb on - strand, within CCNA_01274 at 1401.062 kb on + strand, within CCNA_01274 at 1401.070 kb on - strand, within CCNA_01274 at 1401.070 kb on - strand, within CCNA_01274 at 1401.082 kb on + strand, within CCNA_01274 at 1401.090 kb on - strand, within CCNA_01274 at 1401.090 kb on - strand, within CCNA_01274 at 1401.106 kb on + strand, within CCNA_01274 at 1401.140 kb on - strand, within CCNA_01274 at 1401.175 kb on + strand, within CCNA_01274 at 1401.183 kb on - strand, within CCNA_01274 at 1401.200 kb on + strand, within CCNA_01274 at 1401.213 kb on + strand, within CCNA_01274 at 1401.237 kb on - strand, within CCNA_01274 at 1401.278 kb on - strand, within CCNA_01274 at 1401.290 kb on + strand, within CCNA_01274 at 1401.319 kb on - strand, within CCNA_01274 at 1401.351 kb on + strand, within CCNA_01274 at 1401.351 kb on + strand, within CCNA_01274 at 1401.442 kb on + strand, within CCNA_01274 at 1401.491 kb on - strand at 1401.491 kb on - strand at 1401.491 kb on - strand at 1401.597 kb on + strand at 1401.644 kb on + strand at 1401.686 kb on + strand at 1401.725 kb on + strand at 1402.084 kb on + strand, within CCNA_01275 at 1402.164 kb on - strand, within CCNA_01275 at 1402.372 kb on - strand, within CCNA_01275 at 1402.372 kb on - strand, within CCNA_01275 at 1402.372 kb on - strand, within CCNA_01275 at 1402.657 kb on - strand, within CCNA_01276 at 1402.686 kb on + strand, within CCNA_01276 at 1402.686 kb on + strand, within CCNA_01276 at 1402.703 kb on + strand, within CCNA_01276 at 1402.809 kb on + strand, within CCNA_01276 at 1402.867 kb on - strand, within CCNA_01276 at 1403.012 kb on - strand at 1403.115 kb on + strand at 1403.120 kb on + strand at 1403.120 kb on + strand at 1403.193 kb on - strand, within CCNA_01277 at 1403.201 kb on + strand, within CCNA_01277 at 1403.268 kb on + strand, within CCNA_01277 at 1403.374 kb on + strand, within CCNA_01277 at 1403.382 kb on - strand, within CCNA_01277 at 1403.382 kb on - strand, within CCNA_01277 at 1403.441 kb on + strand, within CCNA_01277 at 1403.446 kb on - strand, within CCNA_01277 at 1403.454 kb on - strand, within CCNA_01277 at 1403.469 kb on - strand, within CCNA_01277 at 1403.517 kb on - strand, within CCNA_01277 at 1403.587 kb on - strand, within CCNA_01277 at 1403.587 kb on - strand, within CCNA_01277 at 1403.587 kb on - strand, within CCNA_01277
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,400,720 - CCNA_01274 0.42 -0.4 1,400,722 + CCNA_01274 0.42 -0.4 1,400,822 - CCNA_01274 0.48 +0.8 1,400,856 + CCNA_01274 0.51 -0.5 1,400,899 + CCNA_01274 0.53 -0.5 1,400,899 + CCNA_01274 0.53 +0.1 1,400,960 + CCNA_01274 0.57 -0.3 1,400,965 + CCNA_01274 0.58 -0.0 1,400,965 + CCNA_01274 0.58 +0.9 1,400,984 - CCNA_01274 0.59 +0.9 1,401,012 + CCNA_01274 0.61 +0.8 1,401,012 + CCNA_01274 0.61 -0.5 1,401,012 + CCNA_01274 0.61 +0.4 1,401,020 - CCNA_01274 0.61 +0.1 1,401,020 - CCNA_01274 0.61 -0.6 1,401,020 - CCNA_01274 0.61 +0.3 1,401,020 - CCNA_01274 0.61 -0.4 1,401,062 + CCNA_01274 0.64 -1.1 1,401,070 - CCNA_01274 0.65 +0.4 1,401,070 - CCNA_01274 0.65 -0.2 1,401,082 + CCNA_01274 0.65 -1.0 1,401,090 - CCNA_01274 0.66 -0.1 1,401,090 - CCNA_01274 0.66 -0.7 1,401,106 + CCNA_01274 0.67 -0.1 1,401,140 - CCNA_01274 0.69 -0.9 1,401,175 + CCNA_01274 0.72 -0.7 1,401,183 - CCNA_01274 0.72 -0.9 1,401,200 + CCNA_01274 0.73 -0.4 1,401,213 + CCNA_01274 0.74 +0.1 1,401,237 - CCNA_01274 0.76 -0.4 1,401,278 - CCNA_01274 0.78 -0.4 1,401,290 + CCNA_01274 0.79 +1.2 1,401,319 - CCNA_01274 0.81 +0.2 1,401,351 + CCNA_01274 0.83 -0.3 1,401,351 + CCNA_01274 0.83 -0.2 1,401,442 + CCNA_01274 0.89 -0.0 1,401,491 - -0.5 1,401,491 - +0.7 1,401,491 - +1.4 1,401,597 + -0.6 1,401,644 + +0.5 1,401,686 + -0.1 1,401,725 + +0.1 1,402,084 + CCNA_01275 0.41 -2.0 1,402,164 - CCNA_01275 0.50 +0.7 1,402,372 - CCNA_01275 0.73 -1.0 1,402,372 - CCNA_01275 0.73 +0.7 1,402,372 - CCNA_01275 0.73 -0.3 1,402,657 - CCNA_01276 0.13 +1.2 1,402,686 + CCNA_01276 0.21 -0.3 1,402,686 + CCNA_01276 0.21 +1.3 1,402,703 + CCNA_01276 0.26 +0.5 1,402,809 + CCNA_01276 0.55 +1.3 1,402,867 - CCNA_01276 0.71 +0.0 1,403,012 - +0.2 1,403,115 + +0.5 1,403,120 + +0.7 1,403,120 + +0.4 1,403,193 - CCNA_01277 0.15 -0.8 1,403,201 + CCNA_01277 0.15 +0.6 1,403,268 + CCNA_01277 0.20 +0.1 1,403,374 + CCNA_01277 0.28 -0.2 1,403,382 - CCNA_01277 0.28 -0.2 1,403,382 - CCNA_01277 0.28 +0.5 1,403,441 + CCNA_01277 0.32 +1.4 1,403,446 - CCNA_01277 0.33 -0.1 1,403,454 - CCNA_01277 0.33 +0.3 1,403,469 - CCNA_01277 0.34 -1.0 1,403,517 - CCNA_01277 0.38 +0.4 1,403,587 - CCNA_01277 0.43 -1.0 1,403,587 - CCNA_01277 0.43 -0.4 1,403,587 - CCNA_01277 0.43 +0.0
Or see this region's nucleotide sequence