Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01270

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01268 and CCNA_01269 are separated by 280 nucleotidesCCNA_01269 and CCNA_01270 are separated by 56 nucleotidesCCNA_01270 and CCNA_01271 are separated by 148 nucleotidesCCNA_01271 and CCNA_01272 are separated by 7 nucleotides CCNA_01268: CCNA_01268 - cytochrome c, at 1,396,765 to 1,397,271 _01268 CCNA_01269: CCNA_01269 - GcrA superfamily protein, at 1,397,552 to 1,398,055 _01269 CCNA_01270: CCNA_01270 - hypothetical protein, at 1,398,112 to 1,398,321 _01270 CCNA_01271: CCNA_01271 - MarR-family transcriptional regulator, at 1,398,470 to 1,399,003 _01271 CCNA_01272: CCNA_01272 - peptidyl-tRNA hydrolase family protein, at 1,399,011 to 1,399,442 _01272 Position (kb) 1398 1399Strain fitness (log2 ratio) -2 -1 0 1 2at 1397.141 kb on - strand, within CCNA_01268at 1397.208 kb on + strand, within CCNA_01268at 1397.208 kb on + strand, within CCNA_01268at 1397.208 kb on + strand, within CCNA_01268at 1397.216 kb on - strand, within CCNA_01268at 1397.276 kb on - strandat 1397.330 kb on - strandat 1397.347 kb on - strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.398 kb on - strandat 1397.479 kb on - strandat 1397.530 kb on + strandat 1397.533 kb on - strandat 1397.535 kb on + strandat 1397.538 kb on - strandat 1397.557 kb on - strandat 1397.557 kb on - strandat 1397.557 kb on - strandat 1397.589 kb on - strandat 1397.635 kb on - strand, within CCNA_01269at 1397.782 kb on - strand, within CCNA_01269at 1397.841 kb on + strand, within CCNA_01269at 1397.841 kb on + strand, within CCNA_01269at 1397.841 kb on + strand, within CCNA_01269at 1397.849 kb on - strand, within CCNA_01269at 1397.849 kb on - strand, within CCNA_01269at 1397.849 kb on - strand, within CCNA_01269at 1397.849 kb on - strand, within CCNA_01269at 1397.946 kb on - strand, within CCNA_01269at 1397.946 kb on - strand, within CCNA_01269at 1397.993 kb on - strand, within CCNA_01269at 1398.002 kb on + strand, within CCNA_01269at 1398.008 kb on + strandat 1398.016 kb on - strandat 1398.018 kb on - strandat 1398.060 kb on + strandat 1398.068 kb on - strandat 1398.117 kb on - strandat 1398.121 kb on + strandat 1398.124 kb on - strandat 1398.240 kb on + strand, within CCNA_01270at 1398.293 kb on - strand, within CCNA_01270at 1398.301 kb on - strandat 1398.336 kb on - strandat 1398.359 kb on - strandat 1398.369 kb on - strandat 1398.369 kb on - strandat 1398.384 kb on - strandat 1398.394 kb on + strandat 1398.424 kb on + strandat 1398.463 kb on + strandat 1398.506 kb on + strandat 1398.506 kb on + strandat 1398.523 kb on + strandat 1398.559 kb on + strand, within CCNA_01271at 1398.561 kb on - strand, within CCNA_01271at 1398.571 kb on - strand, within CCNA_01271at 1398.672 kb on - strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.707 kb on + strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.715 kb on - strand, within CCNA_01271at 1398.761 kb on + strand, within CCNA_01271at 1398.874 kb on + strand, within CCNA_01271at 1398.874 kb on + strand, within CCNA_01271at 1398.880 kb on - strand, within CCNA_01271at 1398.896 kb on + strand, within CCNA_01271at 1398.904 kb on + strand, within CCNA_01271at 1398.942 kb on + strand, within CCNA_01271at 1399.005 kb on - strandat 1399.005 kb on - strandat 1399.039 kb on - strandat 1399.050 kb on - strandat 1399.069 kb on + strand, within CCNA_01272at 1399.086 kb on - strand, within CCNA_01272at 1399.100 kb on - strand, within CCNA_01272at 1399.128 kb on - strand, within CCNA_01272at 1399.171 kb on - strand, within CCNA_01272at 1399.218 kb on + strand, within CCNA_01272at 1399.230 kb on + strand, within CCNA_01272at 1399.238 kb on - strand, within CCNA_01272at 1399.238 kb on - strand, within CCNA_01272at 1399.238 kb on - strand, within CCNA_01272at 1399.238 kb on - strand, within CCNA_01272at 1399.238 kb on - strand, within CCNA_01272at 1399.238 kb on - strand, within CCNA_01272at 1399.243 kb on - strand, within CCNA_01272at 1399.254 kb on - strand, within CCNA_01272at 1399.279 kb on + strand, within CCNA_01272at 1399.279 kb on + strand, within CCNA_01272at 1399.315 kb on - strand, within CCNA_01272at 1399.319 kb on + strand, within CCNA_01272

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,397,141 - CCNA_01268 0.74 -0.5
1,397,208 + CCNA_01268 0.87 +1.4
1,397,208 + CCNA_01268 0.87 -0.4
1,397,208 + CCNA_01268 0.87 -0.8
1,397,216 - CCNA_01268 0.89 -0.9
1,397,276 - +0.2
1,397,330 - +0.9
1,397,347 - -0.2
1,397,398 - +1.2
1,397,398 - -0.2
1,397,398 - +0.9
1,397,479 - +0.4
1,397,530 + -0.2
1,397,533 - -0.1
1,397,535 + -0.3
1,397,538 - +0.1
1,397,557 - -1.1
1,397,557 - +0.9
1,397,557 - -0.8
1,397,589 - -1.8
1,397,635 - CCNA_01269 0.16 +0.7
1,397,782 - CCNA_01269 0.46 +1.0
1,397,841 + CCNA_01269 0.57 -0.6
1,397,841 + CCNA_01269 0.57 +0.0
1,397,841 + CCNA_01269 0.57 +1.2
1,397,849 - CCNA_01269 0.59 -1.0
1,397,849 - CCNA_01269 0.59 +1.1
1,397,849 - CCNA_01269 0.59 -0.2
1,397,849 - CCNA_01269 0.59 -0.7
1,397,946 - CCNA_01269 0.78 +0.3
1,397,946 - CCNA_01269 0.78 -0.0
1,397,993 - CCNA_01269 0.88 -0.4
1,398,002 + CCNA_01269 0.89 -0.1
1,398,008 + -1.8
1,398,016 - +0.7
1,398,018 - +0.2
1,398,060 + +0.9
1,398,068 - +0.2
1,398,117 - -1.7
1,398,121 + +0.7
1,398,124 - -0.0
1,398,240 + CCNA_01270 0.61 +0.1
1,398,293 - CCNA_01270 0.86 -0.6
1,398,301 - +0.6
1,398,336 - -2.0
1,398,359 - -0.9
1,398,369 - -1.3
1,398,369 - -0.4
1,398,384 - +0.2
1,398,394 + +0.4
1,398,424 + -0.2
1,398,463 + -0.1
1,398,506 + +0.6
1,398,506 + +0.4
1,398,523 + +0.0
1,398,559 + CCNA_01271 0.17 -0.2
1,398,561 - CCNA_01271 0.17 -0.1
1,398,571 - CCNA_01271 0.19 -1.2
1,398,672 - CCNA_01271 0.38 -0.2
1,398,707 + CCNA_01271 0.44 +0.3
1,398,707 + CCNA_01271 0.44 +1.3
1,398,707 + CCNA_01271 0.44 -0.7
1,398,707 + CCNA_01271 0.44 -1.1
1,398,707 + CCNA_01271 0.44 +0.4
1,398,707 + CCNA_01271 0.44 +1.2
1,398,707 + CCNA_01271 0.44 +0.2
1,398,707 + CCNA_01271 0.44 +1.0
1,398,707 + CCNA_01271 0.44 +0.7
1,398,707 + CCNA_01271 0.44 -0.3
1,398,715 - CCNA_01271 0.46 -0.9
1,398,715 - CCNA_01271 0.46 -0.3
1,398,715 - CCNA_01271 0.46 -0.7
1,398,715 - CCNA_01271 0.46 -1.1
1,398,715 - CCNA_01271 0.46 +2.7
1,398,715 - CCNA_01271 0.46 -0.5
1,398,715 - CCNA_01271 0.46 +0.6
1,398,715 - CCNA_01271 0.46 +0.6
1,398,715 - CCNA_01271 0.46 -0.8
1,398,715 - CCNA_01271 0.46 -1.2
1,398,715 - CCNA_01271 0.46 -0.2
1,398,761 + CCNA_01271 0.54 +0.5
1,398,874 + CCNA_01271 0.76 +1.3
1,398,874 + CCNA_01271 0.76 +0.2
1,398,880 - CCNA_01271 0.77 -0.6
1,398,896 + CCNA_01271 0.80 +1.0
1,398,904 + CCNA_01271 0.81 +0.0
1,398,942 + CCNA_01271 0.88 +1.2
1,399,005 - -0.6
1,399,005 - -0.7
1,399,039 - -0.8
1,399,050 - +0.3
1,399,069 + CCNA_01272 0.13 +0.5
1,399,086 - CCNA_01272 0.17 +0.1
1,399,100 - CCNA_01272 0.21 -0.7
1,399,128 - CCNA_01272 0.27 -0.0
1,399,171 - CCNA_01272 0.37 +0.4
1,399,218 + CCNA_01272 0.48 -0.5
1,399,230 + CCNA_01272 0.51 +0.0
1,399,238 - CCNA_01272 0.53 +0.7
1,399,238 - CCNA_01272 0.53 -0.4
1,399,238 - CCNA_01272 0.53 +1.2
1,399,238 - CCNA_01272 0.53 +0.2
1,399,238 - CCNA_01272 0.53 -0.8
1,399,238 - CCNA_01272 0.53 -0.1
1,399,243 - CCNA_01272 0.54 +0.4
1,399,254 - CCNA_01272 0.56 +0.1
1,399,279 + CCNA_01272 0.62 +0.0
1,399,279 + CCNA_01272 0.62 +0.7
1,399,315 - CCNA_01272 0.70 +0.3
1,399,319 + CCNA_01272 0.71 +0.7

Or see this region's nucleotide sequence