Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01171

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01170 and CCNA_R0028 are separated by 237 nucleotidesCCNA_R0028 and CCNA_01171 are separated by 84 nucleotidesCCNA_01171 and CCNA_01172 are separated by 110 nucleotides CCNA_01170: CCNA_01170 - TonB-dependent receptor, at 1,288,710 to 1,291,355 _01170 CCNA_R0028: CCNA_R0028 - tRNA-Lys, at 1,291,593 to 1,291,668 _R0028 CCNA_01171: CCNA_01171 - histidine phosphotransferase ShpA, at 1,291,753 to 1,292,091 _01171 CCNA_01172: CCNA_01172 - AIM24 family protein, at 1,292,202 to 1,293,044 _01172 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -2 -1 0 1 2at 1290.875 kb on + strand, within CCNA_01170at 1290.897 kb on - strand, within CCNA_01170at 1290.930 kb on - strand, within CCNA_01170at 1290.939 kb on - strand, within CCNA_01170at 1290.975 kb on + strand, within CCNA_01170at 1290.975 kb on + strand, within CCNA_01170at 1290.975 kb on + strand, within CCNA_01170at 1290.975 kb on + strand, within CCNA_01170at 1290.975 kb on + strand, within CCNA_01170at 1290.983 kb on - strand, within CCNA_01170at 1290.983 kb on - strand, within CCNA_01170at 1290.983 kb on - strand, within CCNA_01170at 1290.983 kb on - strand, within CCNA_01170at 1290.983 kb on - strand, within CCNA_01170at 1290.983 kb on - strand, within CCNA_01170at 1291.069 kb on - strand, within CCNA_01170at 1291.115 kb on + strandat 1291.125 kb on + strandat 1291.158 kb on + strandat 1291.158 kb on + strandat 1291.188 kb on - strandat 1291.201 kb on - strandat 1291.214 kb on + strandat 1291.261 kb on + strandat 1291.269 kb on - strandat 1291.274 kb on - strandat 1291.279 kb on - strandat 1291.279 kb on - strandat 1291.279 kb on - strandat 1291.297 kb on + strandat 1291.303 kb on + strandat 1291.303 kb on + strandat 1291.311 kb on - strandat 1291.311 kb on - strandat 1291.358 kb on - strandat 1291.403 kb on + strandat 1291.488 kb on + strandat 1291.488 kb on + strandat 1291.489 kb on + strandat 1291.496 kb on - strandat 1291.496 kb on - strandat 1291.496 kb on - strandat 1291.598 kb on - strandat 1291.794 kb on + strand, within CCNA_01171at 1291.803 kb on + strand, within CCNA_01171at 1291.850 kb on + strand, within CCNA_01171at 1291.895 kb on + strand, within CCNA_01171at 1291.922 kb on - strand, within CCNA_01171at 1291.960 kb on - strand, within CCNA_01171at 1291.990 kb on + strand, within CCNA_01171at 1291.990 kb on + strand, within CCNA_01171at 1291.998 kb on - strand, within CCNA_01171at 1291.998 kb on - strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.020 kb on + strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.028 kb on - strand, within CCNA_01171at 1292.035 kb on + strand, within CCNA_01171at 1292.087 kb on + strandat 1292.142 kb on + strandat 1292.150 kb on - strandat 1292.150 kb on - strandat 1292.181 kb on + strandat 1292.181 kb on + strandat 1292.199 kb on + strandat 1292.199 kb on + strandat 1292.202 kb on - strandat 1292.207 kb on - strandat 1292.212 kb on + strandat 1292.212 kb on + strandat 1292.212 kb on + strandat 1292.212 kb on + strandat 1292.212 kb on + strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.352 kb on + strand, within CCNA_01172at 1292.399 kb on - strand, within CCNA_01172at 1292.399 kb on - strand, within CCNA_01172at 1292.465 kb on - strand, within CCNA_01172at 1292.490 kb on - strand, within CCNA_01172at 1292.574 kb on - strand, within CCNA_01172at 1292.574 kb on - strand, within CCNA_01172at 1292.683 kb on - strand, within CCNA_01172at 1292.713 kb on - strand, within CCNA_01172at 1292.738 kb on - strand, within CCNA_01172at 1292.750 kb on + strand, within CCNA_01172at 1292.781 kb on - strand, within CCNA_01172at 1292.809 kb on + strand, within CCNA_01172at 1292.809 kb on + strand, within CCNA_01172at 1292.827 kb on + strand, within CCNA_01172at 1292.852 kb on + strand, within CCNA_01172at 1292.852 kb on + strand, within CCNA_01172at 1292.858 kb on - strand, within CCNA_01172at 1292.870 kb on - strand, within CCNA_01172at 1292.875 kb on + strand, within CCNA_01172at 1292.880 kb on + strand, within CCNA_01172at 1292.885 kb on + strand, within CCNA_01172at 1292.888 kb on - strand, within CCNA_01172at 1292.905 kb on + strand, within CCNA_01172at 1292.905 kb on + strand, within CCNA_01172at 1292.905 kb on + strand, within CCNA_01172at 1292.913 kb on - strand, within CCNA_01172at 1292.913 kb on - strand, within CCNA_01172at 1292.975 kb on + strandat 1292.983 kb on - strandat 1293.047 kb on + strandat 1293.061 kb on + strandat 1293.076 kb on + strandat 1293.081 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,290,875 + CCNA_01170 0.82 +0.3
1,290,897 - CCNA_01170 0.83 +0.5
1,290,930 - CCNA_01170 0.84 +0.2
1,290,939 - CCNA_01170 0.84 +0.4
1,290,975 + CCNA_01170 0.86 -0.5
1,290,975 + CCNA_01170 0.86 -1.3
1,290,975 + CCNA_01170 0.86 -0.4
1,290,975 + CCNA_01170 0.86 -0.6
1,290,975 + CCNA_01170 0.86 -0.6
1,290,983 - CCNA_01170 0.86 +0.7
1,290,983 - CCNA_01170 0.86 -0.3
1,290,983 - CCNA_01170 0.86 -1.5
1,290,983 - CCNA_01170 0.86 +0.5
1,290,983 - CCNA_01170 0.86 +0.5
1,290,983 - CCNA_01170 0.86 -0.1
1,291,069 - CCNA_01170 0.89 +0.1
1,291,115 + -1.9
1,291,125 + -0.5
1,291,158 + -0.4
1,291,158 + -1.5
1,291,188 - -1.1
1,291,201 - -0.1
1,291,214 + +0.4
1,291,261 + +0.2
1,291,269 - +0.2
1,291,274 - +0.4
1,291,279 - +0.9
1,291,279 - -0.1
1,291,279 - +0.9
1,291,297 + +0.4
1,291,303 + -0.8
1,291,303 + -2.5
1,291,311 - +0.9
1,291,311 - +0.3
1,291,358 - +1.7
1,291,403 + +0.5
1,291,488 + -1.3
1,291,488 + -0.7
1,291,489 + -1.0
1,291,496 - -0.1
1,291,496 - +0.1
1,291,496 - -0.1
1,291,598 - -0.4
1,291,794 + CCNA_01171 0.12 +0.3
1,291,803 + CCNA_01171 0.15 -1.7
1,291,850 + CCNA_01171 0.29 -0.8
1,291,895 + CCNA_01171 0.42 -1.9
1,291,922 - CCNA_01171 0.50 -1.2
1,291,960 - CCNA_01171 0.61 -1.9
1,291,990 + CCNA_01171 0.70 -0.0
1,291,990 + CCNA_01171 0.70 -0.7
1,291,998 - CCNA_01171 0.72 -1.3
1,291,998 - CCNA_01171 0.72 -0.7
1,292,020 + CCNA_01171 0.79 -0.0
1,292,020 + CCNA_01171 0.79 +0.6
1,292,020 + CCNA_01171 0.79 -0.0
1,292,020 + CCNA_01171 0.79 +0.1
1,292,020 + CCNA_01171 0.79 -1.0
1,292,020 + CCNA_01171 0.79 -0.1
1,292,020 + CCNA_01171 0.79 -0.1
1,292,020 + CCNA_01171 0.79 -0.2
1,292,020 + CCNA_01171 0.79 -0.1
1,292,020 + CCNA_01171 0.79 -1.2
1,292,020 + CCNA_01171 0.79 -1.2
1,292,028 - CCNA_01171 0.81 -0.6
1,292,028 - CCNA_01171 0.81 -0.6
1,292,028 - CCNA_01171 0.81 +0.3
1,292,028 - CCNA_01171 0.81 +0.4
1,292,028 - CCNA_01171 0.81 +0.6
1,292,028 - CCNA_01171 0.81 -1.0
1,292,028 - CCNA_01171 0.81 -0.7
1,292,028 - CCNA_01171 0.81 +0.4
1,292,028 - CCNA_01171 0.81 -0.3
1,292,035 + CCNA_01171 0.83 -0.9
1,292,087 + -0.6
1,292,142 + -0.7
1,292,150 - -0.4
1,292,150 - -0.0
1,292,181 + -0.5
1,292,181 + +0.4
1,292,199 + +0.5
1,292,199 + -0.4
1,292,202 - -0.3
1,292,207 - +1.5
1,292,212 + -0.6
1,292,212 + +0.9
1,292,212 + -0.5
1,292,212 + -0.2
1,292,212 + +0.5
1,292,220 - +0.7
1,292,220 - -1.0
1,292,220 - +0.5
1,292,220 - -0.1
1,292,220 - +0.2
1,292,352 + CCNA_01172 0.18 +0.8
1,292,399 - CCNA_01172 0.23 -0.3
1,292,399 - CCNA_01172 0.23 +0.5
1,292,465 - CCNA_01172 0.31 -0.1
1,292,490 - CCNA_01172 0.34 -1.5
1,292,574 - CCNA_01172 0.44 +0.1
1,292,574 - CCNA_01172 0.44 -1.2
1,292,683 - CCNA_01172 0.57 -2.4
1,292,713 - CCNA_01172 0.61 +0.0
1,292,738 - CCNA_01172 0.64 -1.3
1,292,750 + CCNA_01172 0.65 +0.0
1,292,781 - CCNA_01172 0.69 -0.5
1,292,809 + CCNA_01172 0.72 +0.0
1,292,809 + CCNA_01172 0.72 +0.1
1,292,827 + CCNA_01172 0.74 +0.0
1,292,852 + CCNA_01172 0.77 +0.9
1,292,852 + CCNA_01172 0.77 +1.2
1,292,858 - CCNA_01172 0.78 -0.5
1,292,870 - CCNA_01172 0.79 -1.3
1,292,875 + CCNA_01172 0.80 +0.7
1,292,880 + CCNA_01172 0.80 +0.2
1,292,885 + CCNA_01172 0.81 +2.4
1,292,888 - CCNA_01172 0.81 -0.8
1,292,905 + CCNA_01172 0.83 -0.4
1,292,905 + CCNA_01172 0.83 +0.5
1,292,905 + CCNA_01172 0.83 +0.1
1,292,913 - CCNA_01172 0.84 -0.6
1,292,913 - CCNA_01172 0.84 +0.3
1,292,975 + +0.1
1,292,983 - +0.4
1,293,047 + +1.1
1,293,061 + +0.3
1,293,076 + +0.4
1,293,081 + +0.4

Or see this region's nucleotide sequence