Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01059 and CCNA_01060 are separated by 242 nucleotides CCNA_01060 and CCNA_01061 are separated by 67 nucleotides
CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773
_01059
CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752
_01060
CCNA_01061: CCNA_01061 - type I secretion adaptor protein RsaE, at 1,164,820 to 1,166,130
_01061
Position (kb)
1163
1164
1165 Strain fitness (log2 ratio)
-1
0
1 at 1162.151 kb on + strand, within CCNA_01059 at 1162.316 kb on + strand, within CCNA_01059 at 1162.437 kb on + strand, within CCNA_01059 at 1162.718 kb on + strand at 1162.756 kb on + strand at 1162.875 kb on + strand at 1162.878 kb on - strand at 1162.888 kb on - strand at 1162.901 kb on - strand at 1163.040 kb on - strand at 1163.074 kb on + strand at 1163.243 kb on + strand, within CCNA_01060 at 1163.325 kb on + strand, within CCNA_01060 at 1163.333 kb on - strand, within CCNA_01060 at 1163.385 kb on - strand, within CCNA_01060 at 1163.733 kb on + strand, within CCNA_01060 at 1163.909 kb on - strand, within CCNA_01060 at 1164.386 kb on - strand, within CCNA_01060 at 1164.548 kb on + strand, within CCNA_01060 at 1164.749 kb on + strand at 1164.777 kb on + strand at 1164.855 kb on + strand at 1164.863 kb on - strand at 1164.934 kb on + strand at 1164.984 kb on + strand, within CCNA_01061 at 1165.035 kb on + strand, within CCNA_01061 at 1165.058 kb on - strand, within CCNA_01061 at 1165.140 kb on + strand, within CCNA_01061 at 1165.293 kb on - strand, within CCNA_01061 at 1165.326 kb on + strand, within CCNA_01061 at 1165.518 kb on + strand, within CCNA_01061 at 1165.518 kb on + strand, within CCNA_01061 at 1165.518 kb on + strand, within CCNA_01061 at 1165.557 kb on - strand, within CCNA_01061 at 1165.655 kb on + strand, within CCNA_01061
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,162,151 + CCNA_01059 0.80 +0.9 1,162,316 + CCNA_01059 0.85 -0.3 1,162,437 + CCNA_01059 0.89 +0.2 1,162,718 + +0.3 1,162,756 + -0.4 1,162,875 + +0.2 1,162,878 - -0.4 1,162,888 - +0.4 1,162,901 - +0.0 1,163,040 - -0.5 1,163,074 + +0.7 1,163,243 + CCNA_01060 0.13 -1.6 1,163,325 + CCNA_01060 0.18 -1.1 1,163,333 - CCNA_01060 0.18 -0.4 1,163,385 - CCNA_01060 0.21 -1.0 1,163,733 + CCNA_01060 0.41 +0.4 1,163,909 - CCNA_01060 0.51 -0.4 1,164,386 - CCNA_01060 0.79 +1.7 1,164,548 + CCNA_01060 0.88 -0.1 1,164,749 + +0.4 1,164,777 + -0.3 1,164,855 + -0.4 1,164,863 - -0.4 1,164,934 + -0.5 1,164,984 + CCNA_01061 0.13 -0.8 1,165,035 + CCNA_01061 0.16 -1.3 1,165,058 - CCNA_01061 0.18 -0.1 1,165,140 + CCNA_01061 0.24 +1.7 1,165,293 - CCNA_01061 0.36 -1.7 1,165,326 + CCNA_01061 0.39 -1.6 1,165,518 + CCNA_01061 0.53 -0.2 1,165,518 + CCNA_01061 0.53 -1.2 1,165,518 + CCNA_01061 0.53 +0.6 1,165,557 - CCNA_01061 0.56 -0.1 1,165,655 + CCNA_01061 0.64 -0.8
Or see this region's nucleotide sequence