Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00974 and CCNA_00976 are separated by 446 nucleotides CCNA_00976 and CCNA_R0021 are separated by 173 nucleotides CCNA_R0021 and CCNA_R0022 are separated by 164 nucleotides CCNA_R0022 and CCNA_00977 are separated by 94 nucleotides
CCNA_00974: CCNA_00974 - OAR protein precursor, at 1,051,388 to 1,054,555
_00974
CCNA_00976: CCNA_00976 - signal peptide peptidase A, at 1,055,002 to 1,056,786
_00976
CCNA_R0021: CCNA_R0021 - tRNA-Pro, at 1,056,960 to 1,057,036
_R0021
CCNA_R0022: CCNA_R0022 - tRNA-Gln, at 1,057,201 to 1,057,274
_R0022
CCNA_00977: CCNA_00977 - transposase, IS4/5 family, at 1,057,369 to 1,057,779
_00977
Position (kb)
1055
1056
1057 Strain fitness (log2 ratio)
-1
0
1
2 at 1054.046 kb on - strand, within CCNA_00974 at 1054.081 kb on + strand, within CCNA_00974 at 1054.094 kb on - strand, within CCNA_00974 at 1054.115 kb on - strand, within CCNA_00974 at 1054.187 kb on - strand, within CCNA_00974 at 1054.208 kb on - strand, within CCNA_00974 at 1054.210 kb on + strand, within CCNA_00974 at 1054.218 kb on - strand, within CCNA_00974 at 1054.218 kb on - strand, within CCNA_00974 at 1054.218 kb on - strand, within CCNA_00974 at 1054.262 kb on + strand at 1054.276 kb on - strand at 1054.314 kb on - strand at 1054.329 kb on + strand at 1054.337 kb on - strand at 1054.368 kb on + strand at 1054.472 kb on + strand at 1054.514 kb on + strand at 1054.535 kb on + strand at 1054.543 kb on - strand at 1054.556 kb on + strand at 1054.564 kb on - strand at 1054.589 kb on + strand at 1054.600 kb on - strand at 1054.632 kb on + strand at 1054.632 kb on + strand at 1054.634 kb on - strand at 1054.725 kb on - strand at 1054.731 kb on + strand at 1054.832 kb on + strand at 1054.853 kb on + strand at 1054.861 kb on + strand at 1054.866 kb on + strand at 1054.894 kb on - strand at 1054.911 kb on + strand at 1054.934 kb on + strand at 1055.391 kb on - strand, within CCNA_00976 at 1055.446 kb on - strand, within CCNA_00976 at 1055.526 kb on - strand, within CCNA_00976 at 1055.577 kb on - strand, within CCNA_00976 at 1055.765 kb on + strand, within CCNA_00976 at 1056.077 kb on + strand, within CCNA_00976 at 1056.132 kb on - strand, within CCNA_00976 at 1056.350 kb on - strand, within CCNA_00976 at 1056.400 kb on - strand, within CCNA_00976 at 1056.785 kb on - strand at 1056.849 kb on - strand at 1056.849 kb on - strand at 1057.315 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,054,046 - CCNA_00974 0.84 +0.5 1,054,081 + CCNA_00974 0.85 +0.2 1,054,094 - CCNA_00974 0.85 -0.1 1,054,115 - CCNA_00974 0.86 -0.8 1,054,187 - CCNA_00974 0.88 +0.3 1,054,208 - CCNA_00974 0.89 -0.4 1,054,210 + CCNA_00974 0.89 +0.3 1,054,218 - CCNA_00974 0.89 -0.6 1,054,218 - CCNA_00974 0.89 -0.9 1,054,218 - CCNA_00974 0.89 -0.3 1,054,262 + +0.1 1,054,276 - -0.1 1,054,314 - +1.1 1,054,329 + +2.7 1,054,337 - -0.1 1,054,368 + +0.5 1,054,472 + -1.1 1,054,514 + -0.4 1,054,535 + +0.2 1,054,543 - +0.0 1,054,556 + +0.5 1,054,564 - +1.3 1,054,589 + +0.1 1,054,600 - -0.5 1,054,632 + +0.8 1,054,632 + +0.1 1,054,634 - +0.4 1,054,725 - +0.6 1,054,731 + -0.6 1,054,832 + +0.4 1,054,853 + +0.7 1,054,861 + +0.3 1,054,866 + +0.9 1,054,894 - -0.1 1,054,911 + -0.6 1,054,934 + +0.4 1,055,391 - CCNA_00976 0.22 -0.4 1,055,446 - CCNA_00976 0.25 -1.3 1,055,526 - CCNA_00976 0.29 +0.7 1,055,577 - CCNA_00976 0.32 +1.1 1,055,765 + CCNA_00976 0.43 -0.7 1,056,077 + CCNA_00976 0.60 +0.7 1,056,132 - CCNA_00976 0.63 +2.3 1,056,350 - CCNA_00976 0.76 +0.1 1,056,400 - CCNA_00976 0.78 +0.3 1,056,785 - -1.2 1,056,849 - -0.6 1,056,849 - -1.2 1,057,315 + -0.4
Or see this region's nucleotide sequence