Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00951 and CCNA_00952 are separated by 10 nucleotides CCNA_00952 and CCNA_00953 are separated by 15 nucleotides CCNA_00953 and CCNA_00954 are separated by 33 nucleotides
CCNA_00951: CCNA_00951 - flagellar motor switch protein FliG, at 1,028,648 to 1,029,670
_00951
CCNA_00952: CCNA_00952 - flagellar assembly protein FlbE/FliH, at 1,029,681 to 1,030,319
_00952
CCNA_00953: CCNA_00953 - flagellar motor switch protein FliN, at 1,030,335 to 1,030,667
_00953
CCNA_00954: CCNA_00954 - AAA-family response regulator flbD, at 1,030,701 to 1,032,068
_00954
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1028.721 kb on + strand at 1028.743 kb on + strand at 1028.743 kb on + strand at 1028.743 kb on + strand at 1028.751 kb on - strand, within CCNA_00951 at 1028.761 kb on - strand, within CCNA_00951 at 1028.796 kb on - strand, within CCNA_00951 at 1028.798 kb on + strand, within CCNA_00951 at 1028.798 kb on + strand, within CCNA_00951 at 1028.886 kb on + strand, within CCNA_00951 at 1028.886 kb on + strand, within CCNA_00951 at 1028.936 kb on + strand, within CCNA_00951 at 1029.043 kb on + strand, within CCNA_00951 at 1029.067 kb on + strand, within CCNA_00951 at 1029.074 kb on + strand, within CCNA_00951 at 1029.149 kb on + strand, within CCNA_00951 at 1029.200 kb on - strand, within CCNA_00951 at 1029.404 kb on + strand, within CCNA_00951 at 1029.412 kb on - strand, within CCNA_00951 at 1029.448 kb on + strand, within CCNA_00951 at 1029.530 kb on + strand, within CCNA_00951 at 1029.538 kb on + strand, within CCNA_00951 at 1029.556 kb on + strand, within CCNA_00951 at 1029.575 kb on + strand at 1029.590 kb on + strand at 1029.596 kb on - strand at 1029.619 kb on + strand at 1029.623 kb on + strand at 1029.642 kb on - strand at 1029.666 kb on + strand at 1029.669 kb on - strand at 1029.672 kb on - strand at 1029.696 kb on - strand at 1029.743 kb on + strand at 1029.743 kb on + strand at 1029.743 kb on + strand at 1029.751 kb on - strand, within CCNA_00952 at 1029.832 kb on + strand, within CCNA_00952 at 1029.834 kb on + strand, within CCNA_00952 at 1029.834 kb on + strand, within CCNA_00952 at 1029.839 kb on + strand, within CCNA_00952 at 1029.847 kb on - strand, within CCNA_00952 at 1029.857 kb on - strand, within CCNA_00952 at 1029.889 kb on - strand, within CCNA_00952 at 1029.917 kb on - strand, within CCNA_00952 at 1029.990 kb on + strand, within CCNA_00952 at 1030.028 kb on + strand, within CCNA_00952 at 1030.029 kb on - strand, within CCNA_00952 at 1030.035 kb on + strand, within CCNA_00952 at 1030.036 kb on - strand, within CCNA_00952 at 1030.098 kb on - strand, within CCNA_00952 at 1030.250 kb on + strand, within CCNA_00952 at 1030.250 kb on + strand, within CCNA_00952 at 1030.292 kb on + strand at 1030.457 kb on + strand, within CCNA_00953 at 1030.467 kb on + strand, within CCNA_00953 at 1030.475 kb on - strand, within CCNA_00953 at 1030.656 kb on + strand at 1030.661 kb on + strand at 1030.664 kb on - strand at 1030.669 kb on - strand at 1030.700 kb on - strand at 1030.855 kb on + strand, within CCNA_00954 at 1030.941 kb on + strand, within CCNA_00954 at 1030.963 kb on + strand, within CCNA_00954 at 1030.993 kb on - strand, within CCNA_00954 at 1031.075 kb on + strand, within CCNA_00954 at 1031.125 kb on - strand, within CCNA_00954 at 1031.130 kb on + strand, within CCNA_00954 at 1031.133 kb on - strand, within CCNA_00954 at 1031.216 kb on + strand, within CCNA_00954
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,028,721 + +0.8 1,028,743 + +0.2 1,028,743 + -2.1 1,028,743 + -2.1 1,028,751 - CCNA_00951 0.10 -1.0 1,028,761 - CCNA_00951 0.11 +1.0 1,028,796 - CCNA_00951 0.14 -0.1 1,028,798 + CCNA_00951 0.15 +0.6 1,028,798 + CCNA_00951 0.15 -1.0 1,028,886 + CCNA_00951 0.23 +0.7 1,028,886 + CCNA_00951 0.23 -0.5 1,028,936 + CCNA_00951 0.28 -0.3 1,029,043 + CCNA_00951 0.39 -3.1 1,029,067 + CCNA_00951 0.41 -0.8 1,029,074 + CCNA_00951 0.42 +0.2 1,029,149 + CCNA_00951 0.49 +0.4 1,029,200 - CCNA_00951 0.54 +0.2 1,029,404 + CCNA_00951 0.74 -0.3 1,029,412 - CCNA_00951 0.75 -0.6 1,029,448 + CCNA_00951 0.78 -0.3 1,029,530 + CCNA_00951 0.86 -0.3 1,029,538 + CCNA_00951 0.87 -0.1 1,029,556 + CCNA_00951 0.89 +0.7 1,029,575 + -1.8 1,029,590 + +1.4 1,029,596 - -0.3 1,029,619 + -0.7 1,029,623 + +0.6 1,029,642 - -0.1 1,029,666 + +0.3 1,029,669 - -0.9 1,029,672 - -1.5 1,029,696 - +0.4 1,029,743 + -0.3 1,029,743 + -1.5 1,029,743 + -2.7 1,029,751 - CCNA_00952 0.11 -0.7 1,029,832 + CCNA_00952 0.24 -1.4 1,029,834 + CCNA_00952 0.24 -1.3 1,029,834 + CCNA_00952 0.24 +0.7 1,029,839 + CCNA_00952 0.25 -1.9 1,029,847 - CCNA_00952 0.26 -0.7 1,029,857 - CCNA_00952 0.28 -0.3 1,029,889 - CCNA_00952 0.33 -0.1 1,029,917 - CCNA_00952 0.37 -1.1 1,029,990 + CCNA_00952 0.48 +0.8 1,030,028 + CCNA_00952 0.54 -0.8 1,030,029 - CCNA_00952 0.54 -2.1 1,030,035 + CCNA_00952 0.55 -0.2 1,030,036 - CCNA_00952 0.56 -1.0 1,030,098 - CCNA_00952 0.65 +1.2 1,030,250 + CCNA_00952 0.89 -1.3 1,030,250 + CCNA_00952 0.89 +0.0 1,030,292 + +0.1 1,030,457 + CCNA_00953 0.37 -3.9 1,030,467 + CCNA_00953 0.40 -0.4 1,030,475 - CCNA_00953 0.42 +0.2 1,030,656 + -1.1 1,030,661 + +0.3 1,030,664 - -1.7 1,030,669 - -2.0 1,030,700 - -1.6 1,030,855 + CCNA_00954 0.11 +0.3 1,030,941 + CCNA_00954 0.18 -1.4 1,030,963 + CCNA_00954 0.19 +0.6 1,030,993 - CCNA_00954 0.21 -1.0 1,031,075 + CCNA_00954 0.27 -0.4 1,031,125 - CCNA_00954 0.31 +0.7 1,031,130 + CCNA_00954 0.31 -1.1 1,031,133 - CCNA_00954 0.32 +0.7 1,031,216 + CCNA_00954 0.38 +0.7
Or see this region's nucleotide sequence