Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00947 and CCNA_00948 are separated by 168 nucleotides CCNA_00948 and CCNA_00949 are separated by 20 nucleotides CCNA_00949 and CCNA_00950 are separated by 18 nucleotides CCNA_00950 and CCNA_00951 overlap by 1 nucleotides
CCNA_00947: CCNA_00947 - flagellar hook protein FlgE, at 1,024,495 to 1,026,270
_00947
CCNA_00948: CCNA_00948 - CtrA inhibitory protein SciP, at 1,026,439 to 1,026,720
_00948
CCNA_00949: CCNA_00949 - hypothetical protein, at 1,026,741 to 1,026,965
_00949
CCNA_00950: CCNA_00950 - flagellar M-ring protein FliF, at 1,026,984 to 1,028,648
_00950
CCNA_00951: CCNA_00951 - flagellar motor switch protein FliG, at 1,028,648 to 1,029,670
_00951
Position (kb)
1026
1027
1028
1029 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1026.012 kb on - strand, within CCNA_00947 at 1026.028 kb on + strand, within CCNA_00947 at 1026.028 kb on + strand, within CCNA_00947 at 1026.028 kb on + strand, within CCNA_00947 at 1026.028 kb on + strand, within CCNA_00947 at 1026.028 kb on + strand, within CCNA_00947 at 1026.036 kb on - strand, within CCNA_00947 at 1026.036 kb on - strand, within CCNA_00947 at 1026.037 kb on + strand, within CCNA_00947 at 1026.053 kb on - strand, within CCNA_00947 at 1026.095 kb on - strand at 1026.100 kb on + strand at 1026.103 kb on - strand at 1026.127 kb on + strand at 1026.142 kb on + strand at 1026.156 kb on - strand at 1026.180 kb on + strand at 1026.180 kb on + strand at 1026.188 kb on - strand at 1026.195 kb on + strand at 1026.429 kb on + strand at 1026.437 kb on - strand at 1026.721 kb on + strand at 1026.864 kb on - strand, within CCNA_00949 at 1026.871 kb on + strand, within CCNA_00949 at 1026.894 kb on + strand, within CCNA_00949 at 1026.972 kb on + strand at 1026.980 kb on - strand at 1026.991 kb on + strand at 1027.011 kb on - strand at 1027.082 kb on + strand at 1027.115 kb on + strand at 1027.149 kb on + strand at 1027.213 kb on + strand, within CCNA_00950 at 1027.328 kb on + strand, within CCNA_00950 at 1027.374 kb on + strand, within CCNA_00950 at 1027.436 kb on + strand, within CCNA_00950 at 1027.441 kb on + strand, within CCNA_00950 at 1027.451 kb on + strand, within CCNA_00950 at 1027.467 kb on + strand, within CCNA_00950 at 1027.480 kb on - strand, within CCNA_00950 at 1027.536 kb on + strand, within CCNA_00950 at 1027.536 kb on + strand, within CCNA_00950 at 1027.568 kb on + strand, within CCNA_00950 at 1027.568 kb on + strand, within CCNA_00950 at 1027.764 kb on + strand, within CCNA_00950 at 1027.764 kb on + strand, within CCNA_00950 at 1027.772 kb on - strand, within CCNA_00950 at 1027.783 kb on + strand, within CCNA_00950 at 1027.829 kb on + strand, within CCNA_00950 at 1027.899 kb on + strand, within CCNA_00950 at 1027.950 kb on + strand, within CCNA_00950 at 1027.950 kb on + strand, within CCNA_00950 at 1027.950 kb on + strand, within CCNA_00950 at 1027.950 kb on + strand, within CCNA_00950 at 1028.141 kb on + strand, within CCNA_00950 at 1028.182 kb on + strand, within CCNA_00950 at 1028.183 kb on + strand, within CCNA_00950 at 1028.183 kb on + strand, within CCNA_00950 at 1028.215 kb on + strand, within CCNA_00950 at 1028.225 kb on + strand, within CCNA_00950 at 1028.244 kb on - strand, within CCNA_00950 at 1028.281 kb on + strand, within CCNA_00950 at 1028.373 kb on + strand, within CCNA_00950 at 1028.375 kb on + strand, within CCNA_00950 at 1028.381 kb on - strand, within CCNA_00950 at 1028.402 kb on - strand, within CCNA_00950 at 1028.402 kb on - strand, within CCNA_00950 at 1028.557 kb on - strand at 1028.721 kb on + strand at 1028.743 kb on + strand at 1028.743 kb on + strand at 1028.743 kb on + strand at 1028.751 kb on - strand, within CCNA_00951 at 1028.761 kb on - strand, within CCNA_00951 at 1028.796 kb on - strand, within CCNA_00951 at 1028.798 kb on + strand, within CCNA_00951 at 1028.798 kb on + strand, within CCNA_00951 at 1028.886 kb on + strand, within CCNA_00951 at 1028.886 kb on + strand, within CCNA_00951 at 1028.936 kb on + strand, within CCNA_00951 at 1029.043 kb on + strand, within CCNA_00951 at 1029.067 kb on + strand, within CCNA_00951 at 1029.074 kb on + strand, within CCNA_00951 at 1029.149 kb on + strand, within CCNA_00951 at 1029.200 kb on - strand, within CCNA_00951 at 1029.404 kb on + strand, within CCNA_00951 at 1029.412 kb on - strand, within CCNA_00951 at 1029.448 kb on + strand, within CCNA_00951 at 1029.530 kb on + strand, within CCNA_00951 at 1029.538 kb on + strand, within CCNA_00951 at 1029.556 kb on + strand, within CCNA_00951 at 1029.575 kb on + strand at 1029.590 kb on + strand at 1029.596 kb on - strand at 1029.619 kb on + strand at 1029.623 kb on + strand at 1029.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,026,012 - CCNA_00947 0.85 -1.1 1,026,028 + CCNA_00947 0.86 +0.9 1,026,028 + CCNA_00947 0.86 +0.7 1,026,028 + CCNA_00947 0.86 +0.5 1,026,028 + CCNA_00947 0.86 -0.3 1,026,028 + CCNA_00947 0.86 +0.5 1,026,036 - CCNA_00947 0.87 -2.0 1,026,036 - CCNA_00947 0.87 -2.0 1,026,037 + CCNA_00947 0.87 +0.4 1,026,053 - CCNA_00947 0.88 -1.9 1,026,095 - +0.2 1,026,100 + +0.7 1,026,103 - +0.1 1,026,127 + +0.5 1,026,142 + +0.2 1,026,156 - -0.3 1,026,180 + +0.7 1,026,180 + -0.0 1,026,188 - +0.4 1,026,195 + +0.3 1,026,429 + -2.6 1,026,437 - -1.1 1,026,721 + -1.0 1,026,864 - CCNA_00949 0.55 +0.4 1,026,871 + CCNA_00949 0.58 -0.1 1,026,894 + CCNA_00949 0.68 -1.2 1,026,972 + -0.3 1,026,980 - -0.2 1,026,991 + -2.0 1,027,011 - -1.3 1,027,082 + +0.7 1,027,115 + -0.4 1,027,149 + -1.3 1,027,213 + CCNA_00950 0.14 -1.3 1,027,328 + CCNA_00950 0.21 -0.6 1,027,374 + CCNA_00950 0.23 -1.9 1,027,436 + CCNA_00950 0.27 +0.4 1,027,441 + CCNA_00950 0.27 -0.4 1,027,451 + CCNA_00950 0.28 -1.3 1,027,467 + CCNA_00950 0.29 +0.7 1,027,480 - CCNA_00950 0.30 +0.2 1,027,536 + CCNA_00950 0.33 -1.3 1,027,536 + CCNA_00950 0.33 -2.1 1,027,568 + CCNA_00950 0.35 -1.0 1,027,568 + CCNA_00950 0.35 -0.2 1,027,764 + CCNA_00950 0.47 -0.8 1,027,764 + CCNA_00950 0.47 +0.4 1,027,772 - CCNA_00950 0.47 +0.7 1,027,783 + CCNA_00950 0.48 +0.7 1,027,829 + CCNA_00950 0.51 +0.0 1,027,899 + CCNA_00950 0.55 +0.2 1,027,950 + CCNA_00950 0.58 -0.8 1,027,950 + CCNA_00950 0.58 -2.4 1,027,950 + CCNA_00950 0.58 -0.1 1,027,950 + CCNA_00950 0.58 -0.7 1,028,141 + CCNA_00950 0.69 -2.8 1,028,182 + CCNA_00950 0.72 -1.0 1,028,183 + CCNA_00950 0.72 -1.1 1,028,183 + CCNA_00950 0.72 -2.3 1,028,215 + CCNA_00950 0.74 +0.7 1,028,225 + CCNA_00950 0.75 -1.7 1,028,244 - CCNA_00950 0.76 +0.7 1,028,281 + CCNA_00950 0.78 -1.6 1,028,373 + CCNA_00950 0.83 -0.7 1,028,375 + CCNA_00950 0.84 -0.6 1,028,381 - CCNA_00950 0.84 +0.2 1,028,402 - CCNA_00950 0.85 +0.2 1,028,402 - CCNA_00950 0.85 -0.8 1,028,557 - +0.4 1,028,721 + +0.8 1,028,743 + +0.2 1,028,743 + -2.1 1,028,743 + -2.1 1,028,751 - CCNA_00951 0.10 -1.0 1,028,761 - CCNA_00951 0.11 +1.0 1,028,796 - CCNA_00951 0.14 -0.1 1,028,798 + CCNA_00951 0.15 +0.6 1,028,798 + CCNA_00951 0.15 -1.0 1,028,886 + CCNA_00951 0.23 +0.7 1,028,886 + CCNA_00951 0.23 -0.5 1,028,936 + CCNA_00951 0.28 -0.3 1,029,043 + CCNA_00951 0.39 -3.1 1,029,067 + CCNA_00951 0.41 -0.8 1,029,074 + CCNA_00951 0.42 +0.2 1,029,149 + CCNA_00951 0.49 +0.4 1,029,200 - CCNA_00951 0.54 +0.2 1,029,404 + CCNA_00951 0.74 -0.3 1,029,412 - CCNA_00951 0.75 -0.6 1,029,448 + CCNA_00951 0.78 -0.3 1,029,530 + CCNA_00951 0.86 -0.3 1,029,538 + CCNA_00951 0.87 -0.1 1,029,556 + CCNA_00951 0.89 +0.7 1,029,575 + -1.8 1,029,590 + +1.4 1,029,596 - -0.3 1,029,619 + -0.7 1,029,623 + +0.6 1,029,642 - -0.1
Or see this region's nucleotide sequence