Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00921 and CCNA_00922 are separated by 98 nucleotides CCNA_00922 and CCNA_00923 are separated by 219 nucleotides CCNA_00923 and CCNA_00924 are separated by 9 nucleotides CCNA_00924 and CCNA_00925 are separated by 0 nucleotides
CCNA_00921: CCNA_00921 - zinc metalloprotease, at 997,744 to 998,499
_00921
CCNA_00922: CCNA_00922 - ClpB protein, at 998,598 to 1,001,177
_00922
CCNA_00923: CCNA_00923 - hypothetical protein, at 1,001,397 to 1,001,729
_00923
CCNA_00924: CCNA_00924 - MarR/EmrR family transcriptional regulator, at 1,001,739 to 1,002,017
_00924
CCNA_00925: CCNA_00925 - hypothetical protein, at 1,002,018 to 1,002,560
_00925
Position (kb) 998
999
1000
1001
1002 Strain fitness (log2 ratio) -2
-1
0
1
2 at 997.659 kb on - strand at 997.701 kb on + strand at 997.740 kb on + strand at 997.740 kb on + strand at 997.748 kb on - strand at 997.748 kb on - strand at 997.749 kb on - strand at 997.764 kb on + strand at 997.785 kb on + strand at 997.795 kb on + strand at 997.795 kb on - strand at 997.808 kb on + strand at 997.821 kb on + strand, within CCNA_00921 at 997.834 kb on - strand, within CCNA_00921 at 997.844 kb on - strand, within CCNA_00921 at 997.844 kb on - strand, within CCNA_00921 at 997.845 kb on - strand, within CCNA_00921 at 997.876 kb on + strand, within CCNA_00921 at 997.881 kb on + strand, within CCNA_00921 at 997.881 kb on + strand, within CCNA_00921 at 997.889 kb on - strand, within CCNA_00921 at 997.890 kb on - strand, within CCNA_00921 at 997.895 kb on - strand, within CCNA_00921 at 997.926 kb on + strand, within CCNA_00921 at 997.941 kb on + strand, within CCNA_00921 at 997.955 kb on - strand, within CCNA_00921 at 998.060 kb on + strand, within CCNA_00921 at 998.064 kb on - strand, within CCNA_00921 at 998.137 kb on + strand, within CCNA_00921 at 998.140 kb on - strand, within CCNA_00921 at 998.140 kb on - strand, within CCNA_00921 at 998.188 kb on + strand, within CCNA_00921 at 998.305 kb on + strand, within CCNA_00921 at 998.396 kb on + strand, within CCNA_00921 at 998.437 kb on - strand at 998.442 kb on + strand at 998.442 kb on - strand at 998.450 kb on - strand at 998.495 kb on + strand at 998.545 kb on - strand at 998.556 kb on + strand at 998.556 kb on + strand at 998.564 kb on - strand at 998.564 kb on - strand at 998.612 kb on + strand at 998.612 kb on + strand at 998.614 kb on + strand at 998.646 kb on + strand at 998.646 kb on + strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.654 kb on - strand at 998.665 kb on + strand at 998.681 kb on - strand at 998.714 kb on - strand at 998.782 kb on - strand at 998.796 kb on + strand at 998.801 kb on + strand at 998.801 kb on + strand at 998.801 kb on + strand at 998.809 kb on - strand at 998.809 kb on - strand at 998.837 kb on + strand at 998.857 kb on - strand, within CCNA_00922 at 998.859 kb on + strand, within CCNA_00922 at 998.870 kb on + strand, within CCNA_00922 at 999.002 kb on - strand, within CCNA_00922 at 999.074 kb on - strand, within CCNA_00922 at 999.168 kb on + strand, within CCNA_00922 at 999.194 kb on + strand, within CCNA_00922 at 999.202 kb on - strand, within CCNA_00922 at 999.255 kb on + strand, within CCNA_00922 at 999.304 kb on - strand, within CCNA_00922 at 999.318 kb on + strand, within CCNA_00922 at 999.366 kb on - strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.371 kb on + strand, within CCNA_00922 at 999.419 kb on + strand, within CCNA_00922 at 999.442 kb on + strand, within CCNA_00922 at 999.454 kb on - strand, within CCNA_00922 at 999.481 kb on + strand, within CCNA_00922 at 999.481 kb on + strand, within CCNA_00922 at 999.489 kb on - strand, within CCNA_00922 at 999.491 kb on + strand, within CCNA_00922 at 999.499 kb on - strand, within CCNA_00922 at 999.516 kb on + strand, within CCNA_00922 at 999.526 kb on + strand, within CCNA_00922 at 999.535 kb on + strand, within CCNA_00922 at 999.579 kb on + strand, within CCNA_00922 at 999.603 kb on + strand, within CCNA_00922 at 999.632 kb on - strand, within CCNA_00922 at 999.645 kb on - strand, within CCNA_00922 at 999.652 kb on + strand, within CCNA_00922 at 999.652 kb on + strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.660 kb on - strand, within CCNA_00922 at 999.673 kb on - strand, within CCNA_00922 at 999.676 kb on + strand, within CCNA_00922 at 999.684 kb on - strand, within CCNA_00922 at 999.720 kb on + strand, within CCNA_00922 at 999.788 kb on + strand, within CCNA_00922 at 999.828 kb on + strand, within CCNA_00922 at 999.860 kb on + strand, within CCNA_00922 at 999.860 kb on + strand, within CCNA_00922 at 999.868 kb on - strand, within CCNA_00922 at 999.903 kb on + strand, within CCNA_00922 at 999.904 kb on + strand, within CCNA_00922 at 999.925 kb on + strand, within CCNA_00922 at 999.926 kb on + strand, within CCNA_00922 at 999.934 kb on - strand, within CCNA_00922 at 999.948 kb on + strand, within CCNA_00922 at 999.963 kb on + strand, within CCNA_00922 at 999.969 kb on - strand, within CCNA_00922 at 1000.022 kb on - strand, within CCNA_00922 at 1000.063 kb on - strand, within CCNA_00922 at 1000.119 kb on + strand, within CCNA_00922 at 1000.172 kb on - strand, within CCNA_00922 at 1000.196 kb on + strand, within CCNA_00922 at 1000.268 kb on + strand, within CCNA_00922 at 1000.268 kb on + strand, within CCNA_00922 at 1000.274 kb on - strand, within CCNA_00922 at 1000.276 kb on - strand, within CCNA_00922 at 1000.294 kb on + strand, within CCNA_00922 at 1000.314 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.367 kb on - strand, within CCNA_00922 at 1000.380 kb on - strand, within CCNA_00922 at 1000.418 kb on + strand, within CCNA_00922 at 1000.418 kb on + strand, within CCNA_00922 at 1000.426 kb on - strand, within CCNA_00922 at 1000.431 kb on - strand, within CCNA_00922 at 1000.511 kb on + strand, within CCNA_00922 at 1000.539 kb on + strand, within CCNA_00922 at 1000.547 kb on - strand, within CCNA_00922 at 1000.547 kb on - strand, within CCNA_00922 at 1000.547 kb on - strand, within CCNA_00922 at 1000.555 kb on + strand, within CCNA_00922 at 1000.572 kb on + strand, within CCNA_00922 at 1000.580 kb on - strand, within CCNA_00922 at 1000.591 kb on + strand, within CCNA_00922 at 1000.624 kb on - strand, within CCNA_00922 at 1000.633 kb on - strand, within CCNA_00922 at 1000.639 kb on + strand, within CCNA_00922 at 1000.695 kb on + strand, within CCNA_00922 at 1000.703 kb on - strand, within CCNA_00922 at 1000.790 kb on + strand, within CCNA_00922 at 1000.798 kb on - strand, within CCNA_00922 at 1000.814 kb on + strand, within CCNA_00922 at 1000.820 kb on - strand, within CCNA_00922 at 1000.858 kb on - strand, within CCNA_00922 at 1000.877 kb on + strand, within CCNA_00922 at 1000.877 kb on + strand, within CCNA_00922 at 1000.885 kb on - strand, within CCNA_00922 at 1000.914 kb on + strand, within CCNA_00922 at 1000.965 kb on + strand at 1000.965 kb on + strand at 1000.986 kb on + strand at 1000.986 kb on + strand at 1000.994 kb on - strand at 1001.029 kb on - strand at 1001.037 kb on + strand at 1001.045 kb on - strand at 1001.055 kb on - strand at 1001.060 kb on + strand at 1001.069 kb on - strand at 1001.085 kb on + strand at 1001.088 kb on - strand at 1001.151 kb on - strand at 1001.183 kb on - strand at 1001.190 kb on - strand at 1001.203 kb on + strand at 1001.216 kb on - strand at 1001.243 kb on + strand at 1001.243 kb on + strand at 1001.243 kb on - strand at 1001.251 kb on - strand at 1001.251 kb on - strand at 1001.270 kb on + strand at 1001.298 kb on - strand at 1001.305 kb on + strand at 1001.306 kb on + strand at 1001.372 kb on + strand at 1001.395 kb on - strand at 1001.399 kb on + strand at 1001.400 kb on + strand at 1001.400 kb on + strand at 1001.408 kb on - strand at 1001.463 kb on + strand, within CCNA_00923 at 1001.488 kb on + strand, within CCNA_00923 at 1001.488 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.531 kb on + strand, within CCNA_00923 at 1001.539 kb on - strand, within CCNA_00923 at 1001.539 kb on - strand, within CCNA_00923 at 1001.544 kb on - strand, within CCNA_00923 at 1001.548 kb on + strand, within CCNA_00923 at 1001.561 kb on - strand, within CCNA_00923 at 1001.588 kb on + strand, within CCNA_00923 at 1001.726 kb on + strand at 1001.745 kb on - strand at 1001.745 kb on - strand at 1001.756 kb on - strand at 1001.764 kb on - strand at 1001.837 kb on - strand, within CCNA_00924 at 1001.849 kb on - strand, within CCNA_00924 at 1001.885 kb on - strand, within CCNA_00924 at 1001.885 kb on - strand, within CCNA_00924 at 1001.977 kb on - strand, within CCNA_00924 at 1001.982 kb on - strand, within CCNA_00924 at 1002.051 kb on - strand at 1002.085 kb on - strand, within CCNA_00925 at 1002.085 kb on - strand, within CCNA_00925 at 1002.085 kb on - strand, within CCNA_00925 at 1002.090 kb on - strand, within CCNA_00925 at 1002.092 kb on - strand, within CCNA_00925 at 1002.092 kb on - strand, within CCNA_00925 at 1002.124 kb on + strand, within CCNA_00925 at 1002.140 kb on + strand, within CCNA_00925 at 1002.148 kb on - strand, within CCNA_00925 at 1002.148 kb on - strand, within CCNA_00925
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 997,659 - -1.6 997,701 + +0.1 997,740 + +0.6 997,740 + +0.2 997,748 - +0.2 997,748 - -1.3 997,749 - -1.1 997,764 + +0.6 997,785 + -0.0 997,795 + -0.9 997,795 - -1.3 997,808 + +1.2 997,821 + CCNA_00921 0.10 +0.5 997,834 - CCNA_00921 0.12 -0.5 997,844 - CCNA_00921 0.13 -0.1 997,844 - CCNA_00921 0.13 +0.2 997,845 - CCNA_00921 0.13 +0.8 997,876 + CCNA_00921 0.17 +0.3 997,881 + CCNA_00921 0.18 +1.5 997,881 + CCNA_00921 0.18 +0.7 997,889 - CCNA_00921 0.19 -0.5 997,890 - CCNA_00921 0.19 -0.2 997,895 - CCNA_00921 0.20 +0.4 997,926 + CCNA_00921 0.24 +1.2 997,941 + CCNA_00921 0.26 +0.5 997,955 - CCNA_00921 0.28 -0.6 998,060 + CCNA_00921 0.42 +0.4 998,064 - CCNA_00921 0.42 -0.2 998,137 + CCNA_00921 0.52 -0.1 998,140 - CCNA_00921 0.52 -1.2 998,140 - CCNA_00921 0.52 -0.1 998,188 + CCNA_00921 0.59 +0.5 998,305 + CCNA_00921 0.74 +0.6 998,396 + CCNA_00921 0.86 +0.1 998,437 - -1.3 998,442 + +1.1 998,442 - -0.4 998,450 - -0.1 998,495 + +0.2 998,545 - +0.4 998,556 + +0.2 998,556 + +0.3 998,564 - -0.7 998,564 - -1.1 998,612 + +0.4 998,612 + -0.3 998,614 + +0.1 998,646 + +1.0 998,646 + +0.1 998,654 - -1.7 998,654 - +0.6 998,654 - -0.5 998,654 - -0.3 998,654 - +0.9 998,654 - -1.0 998,654 - -0.1 998,654 - +0.1 998,654 - -0.4 998,654 - +0.2 998,665 + +0.3 998,681 - -0.5 998,714 - -0.8 998,782 - +0.6 998,796 + +0.5 998,801 + +0.4 998,801 + +0.3 998,801 + +0.5 998,809 - -1.7 998,809 - -0.1 998,837 + -0.2 998,857 - CCNA_00922 0.10 -0.2 998,859 + CCNA_00922 0.10 +0.7 998,870 + CCNA_00922 0.11 +0.0 999,002 - CCNA_00922 0.16 +0.2 999,074 - CCNA_00922 0.18 -0.9 999,168 + CCNA_00922 0.22 -0.2 999,194 + CCNA_00922 0.23 -0.5 999,202 - CCNA_00922 0.23 -0.9 999,255 + CCNA_00922 0.25 +0.7 999,304 - CCNA_00922 0.27 +0.7 999,318 + CCNA_00922 0.28 +0.1 999,366 - CCNA_00922 0.30 +0.7 999,371 + CCNA_00922 0.30 +0.5 999,371 + CCNA_00922 0.30 +1.0 999,371 + CCNA_00922 0.30 +0.3 999,371 + CCNA_00922 0.30 +1.5 999,419 + CCNA_00922 0.32 +0.4 999,442 + CCNA_00922 0.33 +0.1 999,454 - CCNA_00922 0.33 -0.1 999,481 + CCNA_00922 0.34 +0.5 999,481 + CCNA_00922 0.34 +0.4 999,489 - CCNA_00922 0.35 +0.7 999,491 + CCNA_00922 0.35 -0.4 999,499 - CCNA_00922 0.35 -0.6 999,516 + CCNA_00922 0.36 +0.5 999,526 + CCNA_00922 0.36 +0.1 999,535 + CCNA_00922 0.36 -0.1 999,579 + CCNA_00922 0.38 -0.1 999,603 + CCNA_00922 0.39 +0.6 999,632 - CCNA_00922 0.40 +0.2 999,645 - CCNA_00922 0.41 -0.2 999,652 + CCNA_00922 0.41 +1.1 999,652 + CCNA_00922 0.41 +0.4 999,660 - CCNA_00922 0.41 +0.4 999,660 - CCNA_00922 0.41 -0.1 999,660 - CCNA_00922 0.41 -0.6 999,660 - CCNA_00922 0.41 +1.3 999,673 - CCNA_00922 0.42 +0.6 999,676 + CCNA_00922 0.42 -0.9 999,684 - CCNA_00922 0.42 +0.7 999,720 + CCNA_00922 0.43 -0.0 999,788 + CCNA_00922 0.46 +0.5 999,828 + CCNA_00922 0.48 -0.1 999,860 + CCNA_00922 0.49 +0.2 999,860 + CCNA_00922 0.49 -1.3 999,868 - CCNA_00922 0.49 +0.8 999,903 + CCNA_00922 0.51 +0.1 999,904 + CCNA_00922 0.51 +0.2 999,925 + CCNA_00922 0.51 +0.8 999,926 + CCNA_00922 0.51 -0.3 999,934 - CCNA_00922 0.52 +0.5 999,948 + CCNA_00922 0.52 -0.3 999,963 + CCNA_00922 0.53 +0.4 999,969 - CCNA_00922 0.53 +0.2 1,000,022 - CCNA_00922 0.55 -1.6 1,000,063 - CCNA_00922 0.57 -0.2 1,000,119 + CCNA_00922 0.59 -0.1 1,000,172 - CCNA_00922 0.61 -0.0 1,000,196 + CCNA_00922 0.62 +0.2 1,000,268 + CCNA_00922 0.65 +0.1 1,000,268 + CCNA_00922 0.65 +0.5 1,000,274 - CCNA_00922 0.65 -0.2 1,000,276 - CCNA_00922 0.65 -1.2 1,000,294 + CCNA_00922 0.66 +0.5 1,000,314 - CCNA_00922 0.67 -0.5 1,000,367 - CCNA_00922 0.69 +0.5 1,000,367 - CCNA_00922 0.69 +0.6 1,000,367 - CCNA_00922 0.69 -1.0 1,000,367 - CCNA_00922 0.69 -0.1 1,000,380 - CCNA_00922 0.69 -0.6 1,000,418 + CCNA_00922 0.71 -0.5 1,000,418 + CCNA_00922 0.71 +0.7 1,000,426 - CCNA_00922 0.71 -2.6 1,000,431 - CCNA_00922 0.71 -0.1 1,000,511 + CCNA_00922 0.74 +0.9 1,000,539 + CCNA_00922 0.75 +0.3 1,000,547 - CCNA_00922 0.76 +0.1 1,000,547 - CCNA_00922 0.76 -0.4 1,000,547 - CCNA_00922 0.76 -0.1 1,000,555 + CCNA_00922 0.76 +1.2 1,000,572 + CCNA_00922 0.77 -0.7 1,000,580 - CCNA_00922 0.77 -1.1 1,000,591 + CCNA_00922 0.77 +0.4 1,000,624 - CCNA_00922 0.79 +0.3 1,000,633 - CCNA_00922 0.79 -0.3 1,000,639 + CCNA_00922 0.79 +0.0 1,000,695 + CCNA_00922 0.81 -0.3 1,000,703 - CCNA_00922 0.82 -0.4 1,000,790 + CCNA_00922 0.85 +0.2 1,000,798 - CCNA_00922 0.85 -0.3 1,000,814 + CCNA_00922 0.86 +0.2 1,000,820 - CCNA_00922 0.86 -0.5 1,000,858 - CCNA_00922 0.88 -0.3 1,000,877 + CCNA_00922 0.88 +0.0 1,000,877 + CCNA_00922 0.88 +0.1 1,000,885 - CCNA_00922 0.89 -0.1 1,000,914 + CCNA_00922 0.90 +0.3 1,000,965 + +0.6 1,000,965 + +1.2 1,000,986 + +0.5 1,000,986 + +0.5 1,000,994 - -0.3 1,001,029 - -0.7 1,001,037 + +0.2 1,001,045 - +0.1 1,001,055 - -0.2 1,001,060 + -0.3 1,001,069 - -0.7 1,001,085 + +0.7 1,001,088 - -0.4 1,001,151 - -1.0 1,001,183 - -0.1 1,001,190 - -0.5 1,001,203 + +0.1 1,001,216 - -0.2 1,001,243 + +0.4 1,001,243 + +0.3 1,001,243 - +0.0 1,001,251 - +0.3 1,001,251 - +0.2 1,001,270 + +2.0 1,001,298 - +0.1 1,001,305 + +0.7 1,001,306 + -1.1 1,001,372 + +0.0 1,001,395 - -1.4 1,001,399 + +0.3 1,001,400 + -0.9 1,001,400 + +0.3 1,001,408 - +0.3 1,001,463 + CCNA_00923 0.20 +0.7 1,001,488 + CCNA_00923 0.27 -0.2 1,001,488 + CCNA_00923 0.27 -0.1 1,001,531 + CCNA_00923 0.40 +0.4 1,001,531 + CCNA_00923 0.40 -0.1 1,001,531 + CCNA_00923 0.40 +0.7 1,001,531 + CCNA_00923 0.40 +0.1 1,001,539 - CCNA_00923 0.43 +0.5 1,001,539 - CCNA_00923 0.43 +0.2 1,001,544 - CCNA_00923 0.44 +1.2 1,001,548 + CCNA_00923 0.45 +0.6 1,001,561 - CCNA_00923 0.49 +0.6 1,001,588 + CCNA_00923 0.57 +0.1 1,001,726 + -1.0 1,001,745 - +0.1 1,001,745 - +1.3 1,001,756 - -0.2 1,001,764 - +0.4 1,001,837 - CCNA_00924 0.35 -0.8 1,001,849 - CCNA_00924 0.39 +0.2 1,001,885 - CCNA_00924 0.52 -0.5 1,001,885 - CCNA_00924 0.52 +0.3 1,001,977 - CCNA_00924 0.85 +0.2 1,001,982 - CCNA_00924 0.87 -0.2 1,002,051 - -0.0 1,002,085 - CCNA_00925 0.12 +0.7 1,002,085 - CCNA_00925 0.12 -0.2 1,002,085 - CCNA_00925 0.12 +0.5 1,002,090 - CCNA_00925 0.13 +0.7 1,002,092 - CCNA_00925 0.14 -0.2 1,002,092 - CCNA_00925 0.14 +2.0 1,002,124 + CCNA_00925 0.20 -0.7 1,002,140 + CCNA_00925 0.22 +0.3 1,002,148 - CCNA_00925 0.24 +0.8 1,002,148 - CCNA_00925 0.24 +0.4
Or see this region's nucleotide sequence