Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00892

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00891 and CCNA_00892 are separated by 486 nucleotidesCCNA_00892 and CCNA_00893 are separated by 159 nucleotides CCNA_00891: CCNA_00891 - transporter, drug/metabolite exporter family, at 968,889 to 969,827 _00891 CCNA_00892: CCNA_00892 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 970,314 to 972,578 _00892 CCNA_00893: CCNA_00893 - helix-turn-helix DNA-binding protein, at 972,738 to 973,802 _00893 Position (kb) 970 971 972 973Strain fitness (log2 ratio) -2 -1 0 1 2at 969.353 kb on + strand, within CCNA_00891at 969.361 kb on - strand, within CCNA_00891at 969.382 kb on - strand, within CCNA_00891at 969.425 kb on - strand, within CCNA_00891at 969.427 kb on + strand, within CCNA_00891at 969.452 kb on + strand, within CCNA_00891at 969.490 kb on + strand, within CCNA_00891at 969.503 kb on - strand, within CCNA_00891at 969.517 kb on - strand, within CCNA_00891at 969.517 kb on - strand, within CCNA_00891at 969.527 kb on - strand, within CCNA_00891at 969.562 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.575 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.612 kb on + strand, within CCNA_00891at 969.632 kb on - strand, within CCNA_00891at 969.637 kb on - strand, within CCNA_00891at 969.677 kb on - strand, within CCNA_00891at 969.704 kb on + strand, within CCNA_00891at 969.704 kb on + strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.713 kb on - strand, within CCNA_00891at 969.713 kb on - strand, within CCNA_00891at 969.717 kb on - strand, within CCNA_00891at 969.742 kb on + strandat 969.749 kb on - strandat 969.749 kb on - strandat 969.767 kb on + strandat 969.770 kb on - strandat 969.773 kb on + strandat 969.773 kb on + strandat 969.782 kb on + strandat 969.790 kb on - strandat 969.800 kb on + strandat 969.872 kb on - strandat 969.977 kb on - strandat 969.988 kb on + strandat 969.994 kb on + strandat 969.994 kb on + strandat 969.995 kb on + strandat 969.995 kb on + strandat 970.002 kb on - strandat 970.003 kb on - strandat 970.021 kb on - strandat 970.035 kb on - strandat 970.045 kb on + strandat 970.092 kb on + strandat 970.099 kb on + strandat 970.100 kb on + strandat 970.112 kb on + strandat 970.112 kb on + strandat 970.125 kb on - strandat 970.166 kb on + strandat 970.168 kb on + strandat 970.174 kb on - strandat 970.183 kb on + strandat 970.191 kb on - strandat 970.236 kb on + strandat 970.247 kb on + strandat 970.253 kb on + strandat 970.255 kb on - strandat 970.255 kb on - strandat 970.255 kb on - strandat 970.255 kb on - strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.279 kb on - strandat 970.279 kb on - strandat 970.281 kb on - strandat 970.291 kb on - strandat 970.400 kb on + strandat 970.486 kb on + strandat 970.619 kb on + strand, within CCNA_00892at 970.693 kb on - strand, within CCNA_00892at 970.774 kb on - strand, within CCNA_00892at 970.849 kb on - strand, within CCNA_00892at 970.856 kb on + strand, within CCNA_00892at 970.856 kb on + strand, within CCNA_00892at 970.864 kb on - strand, within CCNA_00892at 970.871 kb on + strand, within CCNA_00892at 970.879 kb on - strand, within CCNA_00892at 970.879 kb on - strand, within CCNA_00892at 970.879 kb on - strand, within CCNA_00892at 970.879 kb on - strand, within CCNA_00892at 970.978 kb on - strand, within CCNA_00892at 970.978 kb on - strand, within CCNA_00892at 971.647 kb on + strand, within CCNA_00892at 971.744 kb on + strand, within CCNA_00892at 971.945 kb on - strand, within CCNA_00892at 972.224 kb on + strand, within CCNA_00892at 972.232 kb on - strand, within CCNA_00892at 972.539 kb on + strandat 972.548 kb on - strandat 972.560 kb on + strandat 972.568 kb on - strandat 972.667 kb on + strandat 972.678 kb on + strandat 972.678 kb on + strandat 972.678 kb on + strandat 972.686 kb on - strandat 972.686 kb on - strandat 972.686 kb on - strandat 972.755 kb on - strandat 972.766 kb on - strandat 973.393 kb on + strand, within CCNA_00893at 973.481 kb on + strand, within CCNA_00893at 973.523 kb on + strand, within CCNA_00893at 973.523 kb on + strand, within CCNA_00893

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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969,353 + CCNA_00891 0.49 -0.8
969,361 - CCNA_00891 0.50 -0.0
969,382 - CCNA_00891 0.53 -0.4
969,425 - CCNA_00891 0.57 -0.4
969,427 + CCNA_00891 0.57 +0.3
969,452 + CCNA_00891 0.60 -0.9
969,490 + CCNA_00891 0.64 -1.1
969,503 - CCNA_00891 0.65 +0.3
969,517 - CCNA_00891 0.67 -0.6
969,517 - CCNA_00891 0.67 +0.3
969,527 - CCNA_00891 0.68 -0.5
969,562 + CCNA_00891 0.72 -1.5
969,572 + CCNA_00891 0.73 +0.3
969,572 + CCNA_00891 0.73 +0.6
969,575 - CCNA_00891 0.73 -0.3
969,580 - CCNA_00891 0.74 -0.4
969,580 - CCNA_00891 0.74 -0.4
969,580 - CCNA_00891 0.74 +0.1
969,580 - CCNA_00891 0.74 -0.4
969,580 - CCNA_00891 0.74 -1.0
969,612 + CCNA_00891 0.77 +0.1
969,632 - CCNA_00891 0.79 +0.9
969,637 - CCNA_00891 0.80 -1.1
969,677 - CCNA_00891 0.84 -0.1
969,704 + CCNA_00891 0.87 -0.1
969,704 + CCNA_00891 0.87 -0.1
969,712 - CCNA_00891 0.88 -1.0
969,712 - CCNA_00891 0.88 +0.2
969,712 - CCNA_00891 0.88 -0.1
969,713 - CCNA_00891 0.88 +0.1
969,713 - CCNA_00891 0.88 -0.4
969,717 - CCNA_00891 0.88 -0.1
969,742 + +0.9
969,749 - +0.3
969,749 - -0.9
969,767 + -1.4
969,770 - -0.6
969,773 + +0.2
969,773 + -0.1
969,782 + -0.6
969,790 - -0.5
969,800 + -0.9
969,872 - -1.2
969,977 - +0.1
969,988 + +0.2
969,994 + +0.0
969,994 + +1.0
969,995 + -0.5
969,995 + +0.9
970,002 - +1.3
970,003 - +0.2
970,021 - -0.6
970,035 - +0.3
970,045 + +0.1
970,092 + +0.9
970,099 + +0.4
970,100 + +0.7
970,112 + -1.1
970,112 + -0.2
970,125 - -0.3
970,166 + +0.0
970,168 + -1.2
970,174 - -0.1
970,183 + -0.2
970,191 - -1.4
970,236 + +0.2
970,247 + -0.7
970,253 + +0.3
970,255 - -0.4
970,255 - -2.2
970,255 - -0.6
970,255 - -1.5
970,271 + +0.3
970,271 + +0.1
970,271 + -0.5
970,271 + +0.9
970,279 - +2.7
970,279 - +0.0
970,281 - -0.7
970,291 - +0.1
970,400 + -1.5
970,486 + -0.1
970,619 + CCNA_00892 0.13 -1.4
970,693 - CCNA_00892 0.17 -0.7
970,774 - CCNA_00892 0.20 -0.3
970,849 - CCNA_00892 0.24 +2.4
970,856 + CCNA_00892 0.24 +0.0
970,856 + CCNA_00892 0.24 +1.1
970,864 - CCNA_00892 0.24 -0.9
970,871 + CCNA_00892 0.25 -2.1
970,879 - CCNA_00892 0.25 -1.4
970,879 - CCNA_00892 0.25 -0.3
970,879 - CCNA_00892 0.25 -0.7
970,879 - CCNA_00892 0.25 -0.3
970,978 - CCNA_00892 0.29 -0.6
970,978 - CCNA_00892 0.29 +0.7
971,647 + CCNA_00892 0.59 -1.3
971,744 + CCNA_00892 0.63 +0.7
971,945 - CCNA_00892 0.72 +0.6
972,224 + CCNA_00892 0.84 +0.3
972,232 - CCNA_00892 0.85 +0.5
972,539 + -0.4
972,548 - +0.7
972,560 + +0.2
972,568 - +0.2
972,667 + -0.1
972,678 + +0.5
972,678 + +0.4
972,678 + +0.2
972,686 - -0.7
972,686 - -0.5
972,686 - -0.9
972,755 - +1.1
972,766 - -0.5
973,393 + CCNA_00893 0.62 -0.4
973,481 + CCNA_00893 0.70 -1.2
973,523 + CCNA_00893 0.74 -1.6
973,523 + CCNA_00893 0.74 -1.4

Or see this region's nucleotide sequence