Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00848

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00846 and CCNA_03943 are separated by 84 nucleotidesCCNA_03943 and CCNA_00847 are separated by 199 nucleotidesCCNA_00847 and CCNA_00848 are separated by 26 nucleotidesCCNA_00848 and CCNA_00849 are separated by 236 nucleotides CCNA_00846: CCNA_00846 - proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, at 917,301 to 920,390 _00846 CCNA_03943: CCNA_03943 - hypothetical protein, at 920,475 to 920,636 _03943 CCNA_00847: CCNA_00847 - leucine-responsive regulatory protein, at 920,836 to 921,303 _00847 CCNA_00848: CCNA_00848 - leucine-responsive regulatory protein, at 921,330 to 921,494 _00848 CCNA_00849: CCNA_00849 - outer membrane efflux protein, at 921,731 to 923,134 _00849 Position (kb) 921 922Strain fitness (log2 ratio) -2 -1 0 1 2at 920.366 kb on + strandat 920.384 kb on - strandat 920.625 kb on + strandat 920.626 kb on + strandat 920.680 kb on - strandat 920.685 kb on - strandat 920.685 kb on - strandat 920.766 kb on + strandat 920.853 kb on + strandat 920.874 kb on + strandat 920.951 kb on + strand, within CCNA_00847at 920.961 kb on + strand, within CCNA_00847at 920.961 kb on + strand, within CCNA_00847at 920.970 kb on - strand, within CCNA_00847at 921.009 kb on + strand, within CCNA_00847at 921.018 kb on + strand, within CCNA_00847at 921.026 kb on - strand, within CCNA_00847at 921.026 kb on - strand, within CCNA_00847at 921.037 kb on + strand, within CCNA_00847at 921.066 kb on - strand, within CCNA_00847at 921.083 kb on + strand, within CCNA_00847at 921.101 kb on - strand, within CCNA_00847at 921.132 kb on - strand, within CCNA_00847at 921.165 kb on + strand, within CCNA_00847at 921.230 kb on + strand, within CCNA_00847at 921.252 kb on + strand, within CCNA_00847at 921.273 kb on + strandat 921.281 kb on - strandat 921.281 kb on - strandat 921.281 kb on - strandat 921.281 kb on - strandat 921.281 kb on - strandat 921.286 kb on + strandat 921.294 kb on - strandat 921.327 kb on + strandat 921.402 kb on - strand, within CCNA_00848at 921.434 kb on - strand, within CCNA_00848at 921.434 kb on - strand, within CCNA_00848at 921.520 kb on - strandat 921.708 kb on - strandat 921.722 kb on + strandat 921.727 kb on + strandat 921.728 kb on + strandat 921.759 kb on + strandat 921.759 kb on + strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.767 kb on - strandat 921.791 kb on + strandat 921.806 kb on + strandat 921.806 kb on + strandat 921.806 kb on + strandat 921.806 kb on + strandat 921.814 kb on - strandat 921.814 kb on - strandat 921.814 kb on - strandat 921.814 kb on - strandat 921.814 kb on - strandat 921.825 kb on + strandat 921.831 kb on + strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.833 kb on - strandat 921.844 kb on - strandat 921.853 kb on - strandat 921.861 kb on - strandat 921.866 kb on + strandat 921.874 kb on - strand, within CCNA_00849at 921.874 kb on - strand, within CCNA_00849at 921.874 kb on - strand, within CCNA_00849at 921.884 kb on - strand, within CCNA_00849at 921.906 kb on - strand, within CCNA_00849at 921.932 kb on + strand, within CCNA_00849at 921.962 kb on + strand, within CCNA_00849at 921.980 kb on + strand, within CCNA_00849at 922.001 kb on + strand, within CCNA_00849at 922.025 kb on + strand, within CCNA_00849at 922.047 kb on + strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.055 kb on - strand, within CCNA_00849at 922.065 kb on - strand, within CCNA_00849at 922.072 kb on + strand, within CCNA_00849at 922.085 kb on + strand, within CCNA_00849at 922.103 kb on + strand, within CCNA_00849at 922.103 kb on + strand, within CCNA_00849at 922.103 kb on + strand, within CCNA_00849at 922.111 kb on - strand, within CCNA_00849at 922.111 kb on - strand, within CCNA_00849at 922.137 kb on + strand, within CCNA_00849at 922.137 kb on + strand, within CCNA_00849at 922.159 kb on - strand, within CCNA_00849at 922.161 kb on + strand, within CCNA_00849at 922.170 kb on - strand, within CCNA_00849at 922.189 kb on + strand, within CCNA_00849at 922.291 kb on + strand, within CCNA_00849at 922.301 kb on - strand, within CCNA_00849at 922.306 kb on - strand, within CCNA_00849at 922.327 kb on - strand, within CCNA_00849at 922.343 kb on - strand, within CCNA_00849at 922.390 kb on + strand, within CCNA_00849at 922.391 kb on + strand, within CCNA_00849at 922.399 kb on - strand, within CCNA_00849at 922.399 kb on - strand, within CCNA_00849at 922.414 kb on - strand, within CCNA_00849at 922.428 kb on - strand, within CCNA_00849at 922.452 kb on + strand, within CCNA_00849at 922.458 kb on + strand, within CCNA_00849at 922.470 kb on + strand, within CCNA_00849at 922.470 kb on + strand, within CCNA_00849at 922.470 kb on + strand, within CCNA_00849at 922.471 kb on - strand, within CCNA_00849at 922.471 kb on - strand, within CCNA_00849at 922.478 kb on - strand, within CCNA_00849

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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920,366 + +0.6
920,384 - +0.3
920,625 + -0.3
920,626 + -0.5
920,680 - +0.4
920,685 - -0.0
920,685 - +1.1
920,766 + +2.2
920,853 + +0.5
920,874 + +0.3
920,951 + CCNA_00847 0.25 -0.3
920,961 + CCNA_00847 0.27 +1.1
920,961 + CCNA_00847 0.27 -0.1
920,970 - CCNA_00847 0.29 -0.7
921,009 + CCNA_00847 0.37 +0.2
921,018 + CCNA_00847 0.39 -0.5
921,026 - CCNA_00847 0.41 -0.6
921,026 - CCNA_00847 0.41 +0.2
921,037 + CCNA_00847 0.43 -0.2
921,066 - CCNA_00847 0.49 -0.1
921,083 + CCNA_00847 0.53 +0.0
921,101 - CCNA_00847 0.57 -2.1
921,132 - CCNA_00847 0.63 +0.4
921,165 + CCNA_00847 0.70 -0.8
921,230 + CCNA_00847 0.84 +0.9
921,252 + CCNA_00847 0.89 +0.7
921,273 + -0.0
921,281 - -0.2
921,281 - +0.1
921,281 - +1.5
921,281 - +0.5
921,281 - -1.4
921,286 + +0.1
921,294 - -0.2
921,327 + -1.0
921,402 - CCNA_00848 0.44 -1.0
921,434 - CCNA_00848 0.63 -0.1
921,434 - CCNA_00848 0.63 -1.1
921,520 - +0.5
921,708 - -0.1
921,722 + -1.4
921,727 + +0.2
921,728 + -1.1
921,759 + -0.2
921,759 + +0.8
921,767 - +0.3
921,767 - +1.0
921,767 - -0.3
921,767 - +0.9
921,767 - -0.0
921,791 + +0.3
921,806 + -0.6
921,806 + -2.2
921,806 + +0.0
921,806 + +0.5
921,814 - -0.1
921,814 - +0.5
921,814 - +0.3
921,814 - +1.2
921,814 - -0.4
921,825 + -0.5
921,831 + -1.7
921,833 - -0.8
921,833 - -0.0
921,833 - +0.4
921,833 - -0.2
921,833 - -0.1
921,844 - +0.1
921,853 - -0.0
921,861 - +0.2
921,866 + -0.7
921,874 - CCNA_00849 0.10 +1.0
921,874 - CCNA_00849 0.10 -0.0
921,874 - CCNA_00849 0.10 +0.7
921,884 - CCNA_00849 0.11 -0.2
921,906 - CCNA_00849 0.12 +0.2
921,932 + CCNA_00849 0.14 -0.4
921,962 + CCNA_00849 0.16 -0.1
921,980 + CCNA_00849 0.18 +1.3
922,001 + CCNA_00849 0.19 +0.1
922,025 + CCNA_00849 0.21 +0.1
922,047 + CCNA_00849 0.23 +0.5
922,055 - CCNA_00849 0.23 +0.2
922,055 - CCNA_00849 0.23 -0.3
922,055 - CCNA_00849 0.23 -0.4
922,055 - CCNA_00849 0.23 -1.9
922,055 - CCNA_00849 0.23 +0.3
922,065 - CCNA_00849 0.24 +0.1
922,072 + CCNA_00849 0.24 -0.3
922,085 + CCNA_00849 0.25 -0.4
922,103 + CCNA_00849 0.26 -0.7
922,103 + CCNA_00849 0.26 -0.3
922,103 + CCNA_00849 0.26 +0.3
922,111 - CCNA_00849 0.27 +0.0
922,111 - CCNA_00849 0.27 -0.2
922,137 + CCNA_00849 0.29 -0.9
922,137 + CCNA_00849 0.29 -0.9
922,159 - CCNA_00849 0.30 +0.1
922,161 + CCNA_00849 0.31 -0.2
922,170 - CCNA_00849 0.31 +0.8
922,189 + CCNA_00849 0.33 +0.4
922,291 + CCNA_00849 0.40 +0.1
922,301 - CCNA_00849 0.41 +2.0
922,306 - CCNA_00849 0.41 -0.9
922,327 - CCNA_00849 0.42 +0.1
922,343 - CCNA_00849 0.44 -0.1
922,390 + CCNA_00849 0.47 -1.4
922,391 + CCNA_00849 0.47 -0.2
922,399 - CCNA_00849 0.48 +1.6
922,399 - CCNA_00849 0.48 +0.0
922,414 - CCNA_00849 0.49 +1.4
922,428 - CCNA_00849 0.50 -0.0
922,452 + CCNA_00849 0.51 +0.9
922,458 + CCNA_00849 0.52 +1.4
922,470 + CCNA_00849 0.53 +0.3
922,470 + CCNA_00849 0.53 -0.1
922,470 + CCNA_00849 0.53 +0.0
922,471 - CCNA_00849 0.53 -0.4
922,471 - CCNA_00849 0.53 -0.2
922,478 - CCNA_00849 0.53 -0.3

Or see this region's nucleotide sequence