Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00790 and CCNA_03939 are separated by 318 nucleotides CCNA_03939 and CCNA_00792 are separated by 340 nucleotides CCNA_00792 and CCNA_00793 are separated by 88 nucleotides
CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076
_00790
CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685
_03939
CCNA_00792: CCNA_00792 - glycosyltransferase, at 855,026 to 856,210
_00792
CCNA_00793: CCNA_00793 - phosphatidylglycerol glycosyltransferase, at 856,299 to 857,666
_00793
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 854.038 kb on - strand, within CCNA_00790 at 854.078 kb on - strand at 854.078 kb on - strand at 854.245 kb on - strand at 854.270 kb on - strand at 854.270 kb on - strand at 854.305 kb on - strand at 854.314 kb on + strand at 854.326 kb on + strand at 854.326 kb on + strand at 854.331 kb on + strand at 854.331 kb on + strand at 854.333 kb on + strand at 854.334 kb on - strand at 854.334 kb on - strand at 854.334 kb on - strand at 854.344 kb on + strand at 854.344 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.357 kb on - strand at 854.362 kb on - strand at 854.383 kb on - strand at 854.389 kb on - strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.429 kb on + strand, within CCNA_03939 at 854.429 kb on + strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.439 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.504 kb on + strand, within CCNA_03939 at 854.504 kb on + strand, within CCNA_03939 at 854.511 kb on + strand, within CCNA_03939 at 854.517 kb on - strand, within CCNA_03939 at 854.519 kb on - strand, within CCNA_03939 at 854.536 kb on + strand, within CCNA_03939 at 854.538 kb on - strand, within CCNA_03939 at 854.686 kb on + strand at 854.706 kb on + strand at 854.747 kb on + strand at 854.768 kb on + strand at 854.776 kb on - strand at 854.796 kb on + strand at 854.818 kb on - strand at 854.820 kb on - strand at 854.823 kb on - strand at 854.844 kb on - strand at 854.867 kb on + strand at 854.875 kb on - strand at 854.892 kb on + strand at 854.948 kb on + strand at 854.977 kb on + strand at 855.012 kb on - strand at 855.023 kb on + strand at 855.033 kb on - strand at 855.067 kb on - strand at 855.067 kb on - strand at 855.144 kb on + strand at 855.154 kb on + strand, within CCNA_00792 at 855.162 kb on - strand, within CCNA_00792 at 855.162 kb on - strand, within CCNA_00792 at 855.162 kb on - strand, within CCNA_00792 at 855.178 kb on + strand, within CCNA_00792 at 855.250 kb on - strand, within CCNA_00792 at 855.250 kb on - strand, within CCNA_00792 at 855.275 kb on + strand, within CCNA_00792 at 855.276 kb on + strand, within CCNA_00792 at 855.278 kb on - strand, within CCNA_00792 at 855.278 kb on - strand, within CCNA_00792 at 855.278 kb on - strand, within CCNA_00792 at 855.293 kb on + strand, within CCNA_00792 at 855.293 kb on + strand, within CCNA_00792 at 855.301 kb on - strand, within CCNA_00792 at 855.324 kb on - strand, within CCNA_00792 at 855.347 kb on + strand, within CCNA_00792 at 855.360 kb on - strand, within CCNA_00792 at 855.362 kb on + strand, within CCNA_00792 at 855.365 kb on - strand, within CCNA_00792 at 855.370 kb on - strand, within CCNA_00792 at 855.407 kb on - strand, within CCNA_00792 at 855.475 kb on + strand, within CCNA_00792 at 855.475 kb on + strand, within CCNA_00792 at 855.483 kb on - strand, within CCNA_00792 at 855.495 kb on + strand, within CCNA_00792 at 855.495 kb on + strand, within CCNA_00792 at 855.495 kb on + strand, within CCNA_00792 at 855.505 kb on + strand, within CCNA_00792 at 855.513 kb on - strand, within CCNA_00792 at 855.572 kb on - strand, within CCNA_00792 at 855.603 kb on + strand, within CCNA_00792 at 855.630 kb on - strand, within CCNA_00792 at 855.658 kb on + strand, within CCNA_00792 at 855.665 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.695 kb on - strand, within CCNA_00792 at 855.697 kb on - strand, within CCNA_00792 at 855.697 kb on - strand, within CCNA_00792 at 855.697 kb on - strand, within CCNA_00792 at 855.703 kb on + strand, within CCNA_00792 at 855.721 kb on + strand, within CCNA_00792 at 855.774 kb on - strand, within CCNA_00792 at 855.777 kb on + strand, within CCNA_00792 at 855.790 kb on - strand, within CCNA_00792 at 855.813 kb on + strand, within CCNA_00792 at 855.816 kb on - strand, within CCNA_00792 at 855.828 kb on - strand, within CCNA_00792 at 855.839 kb on - strand, within CCNA_00792 at 855.877 kb on - strand, within CCNA_00792 at 855.914 kb on - strand, within CCNA_00792 at 855.939 kb on + strand, within CCNA_00792 at 855.939 kb on + strand, within CCNA_00792 at 855.982 kb on - strand, within CCNA_00792 at 856.002 kb on + strand, within CCNA_00792 at 856.106 kb on - strand at 856.114 kb on - strand at 856.157 kb on - strand at 856.183 kb on - strand at 856.187 kb on - strand at 856.221 kb on + strand at 856.265 kb on - strand at 856.277 kb on - strand at 856.305 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.313 kb on - strand at 856.313 kb on - strand at 856.313 kb on - strand at 856.313 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.354 kb on + strand at 856.354 kb on + strand at 856.359 kb on + strand at 856.359 kb on + strand at 856.362 kb on - strand at 856.362 kb on - strand at 856.367 kb on - strand at 856.407 kb on + strand at 856.453 kb on - strand, within CCNA_00793 at 856.453 kb on - strand, within CCNA_00793 at 856.488 kb on + strand, within CCNA_00793 at 856.506 kb on - strand, within CCNA_00793 at 856.535 kb on + strand, within CCNA_00793 at 856.536 kb on + strand, within CCNA_00793 at 856.556 kb on - strand, within CCNA_00793 at 856.559 kb on + strand, within CCNA_00793 at 856.636 kb on - strand, within CCNA_00793 at 856.641 kb on + strand, within CCNA_00793 at 856.649 kb on - strand, within CCNA_00793 at 856.674 kb on + strand, within CCNA_00793 at 856.704 kb on - strand, within CCNA_00793 at 856.810 kb on + strand, within CCNA_00793 at 856.810 kb on + strand, within CCNA_00793 at 856.818 kb on - strand, within CCNA_00793 at 856.823 kb on - strand, within CCNA_00793 at 856.849 kb on + strand, within CCNA_00793 at 856.870 kb on + strand, within CCNA_00793 at 856.887 kb on + strand, within CCNA_00793 at 856.906 kb on + strand, within CCNA_00793 at 856.906 kb on + strand, within CCNA_00793 at 856.914 kb on - strand, within CCNA_00793 at 856.921 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.941 kb on + strand, within CCNA_00793 at 856.941 kb on + strand, within CCNA_00793 at 856.948 kb on - strand, within CCNA_00793 at 856.948 kb on - strand, within CCNA_00793 at 856.949 kb on - strand, within CCNA_00793 at 856.949 kb on - strand, within CCNA_00793 at 856.971 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.984 kb on - strand, within CCNA_00793 at 856.984 kb on - strand, within CCNA_00793 at 856.984 kb on - strand, within CCNA_00793 at 856.996 kb on + strand, within CCNA_00793 at 857.013 kb on + strand, within CCNA_00793 at 857.021 kb on - strand, within CCNA_00793 at 857.059 kb on - strand, within CCNA_00793
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 854,038 - CCNA_00790 0.90 -1.0 854,078 - +1.0 854,078 - +0.0 854,245 - -0.3 854,270 - +0.3 854,270 - -0.1 854,305 - +0.5 854,314 + -0.1 854,326 + -2.1 854,326 + +0.6 854,331 + -0.9 854,331 + +1.4 854,333 + +0.4 854,334 - +0.7 854,334 - -0.3 854,334 - +0.2 854,344 + -0.7 854,344 + -0.4 854,349 + +0.2 854,349 + +0.4 854,349 + -0.2 854,349 + -0.3 854,349 + -0.8 854,357 - +0.3 854,362 - -0.1 854,383 - -0.5 854,389 - -0.4 854,405 + -0.8 854,405 + +0.5 854,405 + -0.5 854,405 + +0.6 854,405 + -0.1 854,405 + -0.7 854,405 + -0.1 854,413 - +0.7 854,413 - -3.1 854,413 - -0.3 854,413 - +0.9 854,429 + CCNA_03939 0.12 -0.4 854,429 + CCNA_03939 0.12 +0.0 854,437 - CCNA_03939 0.14 -2.9 854,439 + CCNA_03939 0.15 -0.8 854,499 + CCNA_03939 0.36 -1.7 854,499 + CCNA_03939 0.36 -1.7 854,499 + CCNA_03939 0.36 -0.4 854,504 + CCNA_03939 0.37 -0.8 854,504 + CCNA_03939 0.37 -0.5 854,511 + CCNA_03939 0.40 -0.6 854,517 - CCNA_03939 0.42 +0.3 854,519 - CCNA_03939 0.43 -0.5 854,536 + CCNA_03939 0.48 +0.1 854,538 - CCNA_03939 0.49 -0.2 854,686 + -1.0 854,706 + -2.0 854,747 + -0.0 854,768 + -0.9 854,776 - +0.3 854,796 + -0.3 854,818 - -0.8 854,820 - -2.8 854,823 - +0.2 854,844 - +0.2 854,867 + -0.8 854,875 - +0.9 854,892 + -0.5 854,948 + +0.2 854,977 + +0.2 855,012 - -0.5 855,023 + +0.2 855,033 - +1.0 855,067 - -1.3 855,067 - -0.2 855,144 + +1.4 855,154 + CCNA_00792 0.11 +1.3 855,162 - CCNA_00792 0.11 +0.4 855,162 - CCNA_00792 0.11 -0.5 855,162 - CCNA_00792 0.11 -1.7 855,178 + CCNA_00792 0.13 +1.3 855,250 - CCNA_00792 0.19 +1.0 855,250 - CCNA_00792 0.19 -0.0 855,275 + CCNA_00792 0.21 -1.3 855,276 + CCNA_00792 0.21 -0.6 855,278 - CCNA_00792 0.21 -0.2 855,278 - CCNA_00792 0.21 -0.7 855,278 - CCNA_00792 0.21 -0.6 855,293 + CCNA_00792 0.23 -1.6 855,293 + CCNA_00792 0.23 -0.8 855,301 - CCNA_00792 0.23 +1.3 855,324 - CCNA_00792 0.25 +0.4 855,347 + CCNA_00792 0.27 -0.7 855,360 - CCNA_00792 0.28 -0.3 855,362 + CCNA_00792 0.28 -0.8 855,365 - CCNA_00792 0.29 -0.5 855,370 - CCNA_00792 0.29 +0.1 855,407 - CCNA_00792 0.32 +0.6 855,475 + CCNA_00792 0.38 +0.5 855,475 + CCNA_00792 0.38 +0.7 855,483 - CCNA_00792 0.39 -1.0 855,495 + CCNA_00792 0.40 +0.8 855,495 + CCNA_00792 0.40 +0.1 855,495 + CCNA_00792 0.40 -1.5 855,505 + CCNA_00792 0.40 -0.1 855,513 - CCNA_00792 0.41 -0.4 855,572 - CCNA_00792 0.46 +0.7 855,603 + CCNA_00792 0.49 -0.5 855,630 - CCNA_00792 0.51 +0.2 855,658 + CCNA_00792 0.53 -0.1 855,665 + CCNA_00792 0.54 +0.4 855,689 + CCNA_00792 0.56 +0.7 855,689 + CCNA_00792 0.56 -0.4 855,689 + CCNA_00792 0.56 -0.5 855,689 + CCNA_00792 0.56 -0.5 855,695 - CCNA_00792 0.56 +0.1 855,697 - CCNA_00792 0.57 -0.6 855,697 - CCNA_00792 0.57 -0.3 855,697 - CCNA_00792 0.57 -0.9 855,703 + CCNA_00792 0.57 -0.1 855,721 + CCNA_00792 0.59 -0.1 855,774 - CCNA_00792 0.63 -0.4 855,777 + CCNA_00792 0.63 +0.1 855,790 - CCNA_00792 0.64 -0.5 855,813 + CCNA_00792 0.66 -0.7 855,816 - CCNA_00792 0.67 +1.0 855,828 - CCNA_00792 0.68 -1.5 855,839 - CCNA_00792 0.69 -1.6 855,877 - CCNA_00792 0.72 -0.8 855,914 - CCNA_00792 0.75 -0.5 855,939 + CCNA_00792 0.77 -0.1 855,939 + CCNA_00792 0.77 -1.1 855,982 - CCNA_00792 0.81 -0.1 856,002 + CCNA_00792 0.82 -0.5 856,106 - -0.6 856,114 - +0.1 856,157 - +0.4 856,183 - +0.2 856,187 - -1.1 856,221 + -0.4 856,265 - -0.4 856,277 - +0.7 856,305 + +1.4 856,312 + -0.2 856,312 + -0.0 856,312 + -0.4 856,312 + -1.8 856,312 + +0.3 856,312 + +0.2 856,312 + +1.4 856,313 - -1.3 856,313 - -0.1 856,313 - +0.0 856,313 - -0.1 856,320 - +0.1 856,320 - +0.0 856,320 - -0.2 856,320 - -1.9 856,320 - +0.5 856,320 - +0.4 856,354 + +1.7 856,354 + -0.5 856,359 + -0.8 856,359 + +0.9 856,362 - +0.3 856,362 - +1.7 856,367 - +0.3 856,407 + -0.8 856,453 - CCNA_00793 0.11 -0.4 856,453 - CCNA_00793 0.11 +0.0 856,488 + CCNA_00793 0.14 +1.3 856,506 - CCNA_00793 0.15 -0.4 856,535 + CCNA_00793 0.17 -1.1 856,536 + CCNA_00793 0.17 -2.1 856,556 - CCNA_00793 0.19 -0.8 856,559 + CCNA_00793 0.19 -0.2 856,636 - CCNA_00793 0.25 +1.5 856,641 + CCNA_00793 0.25 -1.6 856,649 - CCNA_00793 0.26 -1.5 856,674 + CCNA_00793 0.27 +0.0 856,704 - CCNA_00793 0.30 +0.1 856,810 + CCNA_00793 0.37 +0.3 856,810 + CCNA_00793 0.37 +0.2 856,818 - CCNA_00793 0.38 -0.4 856,823 - CCNA_00793 0.38 +0.1 856,849 + CCNA_00793 0.40 +0.9 856,870 + CCNA_00793 0.42 +0.4 856,887 + CCNA_00793 0.43 -1.3 856,906 + CCNA_00793 0.44 -0.2 856,906 + CCNA_00793 0.44 +0.1 856,914 - CCNA_00793 0.45 -0.1 856,921 + CCNA_00793 0.45 -0.1 856,940 + CCNA_00793 0.47 +0.7 856,940 + CCNA_00793 0.47 -0.3 856,940 + CCNA_00793 0.47 +1.0 856,940 + CCNA_00793 0.47 +0.5 856,940 + CCNA_00793 0.47 -0.1 856,940 + CCNA_00793 0.47 -0.5 856,941 + CCNA_00793 0.47 -1.2 856,941 + CCNA_00793 0.47 -1.5 856,948 - CCNA_00793 0.47 +0.1 856,948 - CCNA_00793 0.47 -0.3 856,949 - CCNA_00793 0.48 -0.0 856,949 - CCNA_00793 0.48 -1.8 856,971 + CCNA_00793 0.49 -0.1 856,976 + CCNA_00793 0.49 -0.5 856,976 + CCNA_00793 0.49 -0.3 856,976 + CCNA_00793 0.49 -0.5 856,976 + CCNA_00793 0.49 -0.4 856,984 - CCNA_00793 0.50 -0.0 856,984 - CCNA_00793 0.50 +0.0 856,984 - CCNA_00793 0.50 -0.5 856,996 + CCNA_00793 0.51 -0.5 857,013 + CCNA_00793 0.52 -0.1 857,021 - CCNA_00793 0.53 -0.5 857,059 - CCNA_00793 0.56 -0.5
Or see this region's nucleotide sequence