Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00788 and CCNA_00789 are separated by 2 nucleotides CCNA_00789 and CCNA_00790 are separated by 175 nucleotides CCNA_00790 and CCNA_03939 are separated by 318 nucleotides
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523
_00789
CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076
_00790
CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685
_03939
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 851.873 kb on - strand, within CCNA_00788 at 851.893 kb on + strand, within CCNA_00788 at 851.896 kb on - strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.917 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.961 kb on - strand, within CCNA_00788 at 851.989 kb on - strand, within CCNA_00788 at 852.000 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.033 kb on + strand, within CCNA_00788 at 852.052 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.093 kb on - strand, within CCNA_00788 at 852.108 kb on - strand, within CCNA_00788 at 852.152 kb on - strand, within CCNA_00788 at 852.245 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.289 kb on - strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.312 kb on + strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.321 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.367 kb on + strand, within CCNA_00788 at 852.368 kb on - strand, within CCNA_00788 at 852.382 kb on + strand, within CCNA_00788 at 852.387 kb on + strand, within CCNA_00788 at 852.433 kb on - strand, within CCNA_00788 at 852.438 kb on - strand, within CCNA_00788 at 852.457 kb on - strand, within CCNA_00788 at 852.466 kb on + strand, within CCNA_00788 at 852.498 kb on + strand, within CCNA_00788 at 852.506 kb on - strand, within CCNA_00788 at 852.506 kb on - strand, within CCNA_00788 at 852.506 kb on - strand, within CCNA_00788 at 852.555 kb on - strand, within CCNA_00788 at 852.568 kb on + strand, within CCNA_00788 at 852.570 kb on - strand, within CCNA_00788 at 852.574 kb on + strand, within CCNA_00788 at 852.576 kb on - strand, within CCNA_00788 at 852.621 kb on + strand, within CCNA_00788 at 852.633 kb on + strand, within CCNA_00788 at 852.636 kb on - strand, within CCNA_00788 at 852.710 kb on - strand, within CCNA_00788 at 852.714 kb on + strand, within CCNA_00788 at 852.714 kb on + strand, within CCNA_00788 at 852.765 kb on + strand at 852.800 kb on - strand at 852.838 kb on + strand at 852.846 kb on - strand at 852.866 kb on - strand at 852.939 kb on + strand, within CCNA_00789 at 852.963 kb on + strand, within CCNA_00789 at 852.995 kb on + strand, within CCNA_00789 at 853.024 kb on - strand, within CCNA_00789 at 853.095 kb on + strand, within CCNA_00789 at 853.098 kb on - strand, within CCNA_00789 at 853.098 kb on - strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.143 kb on + strand, within CCNA_00789 at 853.164 kb on + strand, within CCNA_00789 at 853.189 kb on - strand, within CCNA_00789 at 853.209 kb on + strand, within CCNA_00789 at 853.286 kb on + strand, within CCNA_00789 at 853.300 kb on - strand, within CCNA_00789 at 853.402 kb on + strand, within CCNA_00789 at 853.419 kb on + strand, within CCNA_00789 at 853.459 kb on - strand at 853.459 kb on - strand at 853.461 kb on + strand at 853.461 kb on + strand at 853.461 kb on + strand at 853.471 kb on + strand at 853.474 kb on - strand at 853.482 kb on + strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.598 kb on - strand at 853.598 kb on - strand at 853.600 kb on - strand at 853.607 kb on + strand at 853.607 kb on + strand at 853.658 kb on + strand at 853.677 kb on + strand at 853.709 kb on + strand at 853.725 kb on + strand at 853.764 kb on + strand, within CCNA_00790 at 853.766 kb on + strand, within CCNA_00790 at 853.766 kb on - strand, within CCNA_00790 at 853.771 kb on + strand, within CCNA_00790 at 853.779 kb on - strand, within CCNA_00790 at 853.779 kb on - strand, within CCNA_00790 at 853.809 kb on + strand, within CCNA_00790 at 853.819 kb on - strand, within CCNA_00790 at 853.819 kb on - strand, within CCNA_00790 at 853.850 kb on - strand, within CCNA_00790 at 853.850 kb on - strand, within CCNA_00790 at 853.856 kb on + strand, within CCNA_00790 at 853.912 kb on + strand, within CCNA_00790 at 853.912 kb on - strand, within CCNA_00790 at 853.922 kb on - strand, within CCNA_00790 at 853.964 kb on - strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 853.996 kb on - strand, within CCNA_00790 at 854.006 kb on - strand, within CCNA_00790 at 854.021 kb on - strand, within CCNA_00790 at 854.038 kb on - strand, within CCNA_00790 at 854.078 kb on - strand at 854.078 kb on - strand at 854.245 kb on - strand at 854.270 kb on - strand at 854.270 kb on - strand at 854.305 kb on - strand at 854.314 kb on + strand at 854.326 kb on + strand at 854.326 kb on + strand at 854.331 kb on + strand at 854.331 kb on + strand at 854.333 kb on + strand at 854.334 kb on - strand at 854.334 kb on - strand at 854.334 kb on - strand at 854.344 kb on + strand at 854.344 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.357 kb on - strand at 854.362 kb on - strand at 854.383 kb on - strand at 854.389 kb on - strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.429 kb on + strand, within CCNA_03939 at 854.429 kb on + strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.439 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.504 kb on + strand, within CCNA_03939 at 854.504 kb on + strand, within CCNA_03939 at 854.511 kb on + strand, within CCNA_03939 at 854.517 kb on - strand, within CCNA_03939 at 854.519 kb on - strand, within CCNA_03939
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 851,873 - CCNA_00788 0.24 +0.8 851,893 + CCNA_00788 0.26 -0.2 851,896 - CCNA_00788 0.26 -2.2 851,898 + CCNA_00788 0.26 +0.9 851,898 + CCNA_00788 0.26 -0.3 851,917 + CCNA_00788 0.28 +0.3 851,919 + CCNA_00788 0.28 +1.7 851,927 - CCNA_00788 0.28 -0.5 851,953 + CCNA_00788 0.30 +0.9 851,961 - CCNA_00788 0.31 -0.1 851,961 - CCNA_00788 0.31 -2.2 851,961 - CCNA_00788 0.31 -0.7 851,989 - CCNA_00788 0.33 +1.0 852,000 + CCNA_00788 0.34 -0.1 852,023 + CCNA_00788 0.36 +0.3 852,023 + CCNA_00788 0.36 +0.2 852,023 + CCNA_00788 0.36 -2.7 852,031 - CCNA_00788 0.36 -0.4 852,031 - CCNA_00788 0.36 +0.2 852,031 - CCNA_00788 0.36 +0.8 852,031 - CCNA_00788 0.36 -0.7 852,031 - CCNA_00788 0.36 -2.2 852,033 + CCNA_00788 0.36 +2.3 852,052 + CCNA_00788 0.38 -0.1 852,080 + CCNA_00788 0.40 +0.5 852,080 + CCNA_00788 0.40 +0.2 852,093 - CCNA_00788 0.41 -0.7 852,108 - CCNA_00788 0.42 -1.0 852,152 - CCNA_00788 0.45 -0.5 852,245 + CCNA_00788 0.52 -0.5 852,258 + CCNA_00788 0.53 +0.3 852,258 + CCNA_00788 0.53 -0.1 852,258 + CCNA_00788 0.53 +0.3 852,289 - CCNA_00788 0.56 -1.8 852,307 + CCNA_00788 0.57 -0.7 852,312 + CCNA_00788 0.58 +0.3 852,315 - CCNA_00788 0.58 +0.2 852,321 - CCNA_00788 0.58 +0.6 852,327 - CCNA_00788 0.59 -0.7 852,327 - CCNA_00788 0.59 +0.7 852,327 - CCNA_00788 0.59 +0.5 852,367 + CCNA_00788 0.62 +1.0 852,368 - CCNA_00788 0.62 -0.2 852,382 + CCNA_00788 0.63 -0.0 852,387 + CCNA_00788 0.63 +0.3 852,433 - CCNA_00788 0.67 -0.6 852,438 - CCNA_00788 0.67 -0.5 852,457 - CCNA_00788 0.69 -0.4 852,466 + CCNA_00788 0.69 +0.4 852,498 + CCNA_00788 0.72 -0.3 852,506 - CCNA_00788 0.72 +0.4 852,506 - CCNA_00788 0.72 -0.3 852,506 - CCNA_00788 0.72 +0.7 852,555 - CCNA_00788 0.76 +0.4 852,568 + CCNA_00788 0.77 +0.3 852,570 - CCNA_00788 0.77 -0.2 852,574 + CCNA_00788 0.77 +0.3 852,576 - CCNA_00788 0.78 -0.4 852,621 + CCNA_00788 0.81 -0.7 852,633 + CCNA_00788 0.82 +0.5 852,636 - CCNA_00788 0.82 -0.2 852,710 - CCNA_00788 0.88 -0.6 852,714 + CCNA_00788 0.88 -0.3 852,714 + CCNA_00788 0.88 +1.6 852,765 + -0.3 852,800 - -0.4 852,838 + +0.0 852,846 - +0.4 852,866 - +1.5 852,939 + CCNA_00789 0.10 +0.7 852,963 + CCNA_00789 0.14 +1.1 852,995 + CCNA_00789 0.19 +0.1 853,024 - CCNA_00789 0.23 -0.5 853,095 + CCNA_00789 0.34 -1.4 853,098 - CCNA_00789 0.35 -0.1 853,098 - CCNA_00789 0.35 +1.7 853,103 - CCNA_00789 0.35 -0.1 853,103 - CCNA_00789 0.35 -0.9 853,103 - CCNA_00789 0.35 -2.1 853,143 + CCNA_00789 0.41 +1.7 853,164 + CCNA_00789 0.45 -1.3 853,189 - CCNA_00789 0.49 -1.4 853,209 + CCNA_00789 0.52 -0.6 853,286 + CCNA_00789 0.63 +0.8 853,300 - CCNA_00789 0.66 +0.2 853,402 + CCNA_00789 0.81 -0.3 853,419 + CCNA_00789 0.84 -1.1 853,459 - -0.1 853,459 - -2.3 853,461 + +0.8 853,461 + +0.8 853,461 + +0.5 853,471 + -0.1 853,474 - +0.3 853,482 + -0.7 853,590 + +0.3 853,590 + +1.2 853,590 + -0.1 853,590 + -0.3 853,590 + -1.3 853,598 - -1.3 853,598 - -1.0 853,600 - -0.9 853,607 + +0.1 853,607 + +0.5 853,658 + -0.2 853,677 + +0.1 853,709 + +0.1 853,725 + -0.2 853,764 + CCNA_00790 0.17 +0.2 853,766 + CCNA_00790 0.18 +0.5 853,766 - CCNA_00790 0.18 -0.7 853,771 + CCNA_00790 0.19 +0.2 853,779 - CCNA_00790 0.21 +1.5 853,779 - CCNA_00790 0.21 -0.7 853,809 + CCNA_00790 0.29 -0.8 853,819 - CCNA_00790 0.32 -1.2 853,819 - CCNA_00790 0.32 -0.6 853,850 - CCNA_00790 0.40 +0.5 853,850 - CCNA_00790 0.40 +0.6 853,856 + CCNA_00790 0.42 +0.4 853,912 + CCNA_00790 0.56 +1.5 853,912 - CCNA_00790 0.56 -0.3 853,922 - CCNA_00790 0.59 -0.5 853,964 - CCNA_00790 0.70 -1.5 853,988 + CCNA_00790 0.76 -0.7 853,996 - CCNA_00790 0.79 +0.0 854,006 - CCNA_00790 0.81 -1.5 854,021 - CCNA_00790 0.85 -1.2 854,038 - CCNA_00790 0.90 -1.0 854,078 - +1.0 854,078 - +0.0 854,245 - -0.3 854,270 - +0.3 854,270 - -0.1 854,305 - +0.5 854,314 + -0.1 854,326 + -2.1 854,326 + +0.6 854,331 + -0.9 854,331 + +1.4 854,333 + +0.4 854,334 - +0.7 854,334 - -0.3 854,334 - +0.2 854,344 + -0.7 854,344 + -0.4 854,349 + +0.2 854,349 + +0.4 854,349 + -0.2 854,349 + -0.3 854,349 + -0.8 854,357 - +0.3 854,362 - -0.1 854,383 - -0.5 854,389 - -0.4 854,405 + -0.8 854,405 + +0.5 854,405 + -0.5 854,405 + +0.6 854,405 + -0.1 854,405 + -0.7 854,405 + -0.1 854,413 - +0.7 854,413 - -3.1 854,413 - -0.3 854,413 - +0.9 854,429 + CCNA_03939 0.12 -0.4 854,429 + CCNA_03939 0.12 +0.0 854,437 - CCNA_03939 0.14 -2.9 854,439 + CCNA_03939 0.15 -0.8 854,499 + CCNA_03939 0.36 -1.7 854,499 + CCNA_03939 0.36 -1.7 854,499 + CCNA_03939 0.36 -0.4 854,504 + CCNA_03939 0.37 -0.8 854,504 + CCNA_03939 0.37 -0.5 854,511 + CCNA_03939 0.40 -0.6 854,517 - CCNA_03939 0.42 +0.3 854,519 - CCNA_03939 0.43 -0.5
Or see this region's nucleotide sequence